Wall clock time and date at job start Mon Mar 30 2020 02:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31583 * 1 3 3 Si 1.86799 * 120.00238 * 2 1 4 4 H 1.48494 * 109.47100 * 270.00208 * 3 2 1 5 5 H 1.48501 * 109.46968 * 30.00112 * 3 2 1 6 6 H 1.48497 * 109.46841 * 149.99828 * 3 2 1 7 7 C 1.38638 * 119.99527 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99285 * 179.97438 * 7 2 1 9 9 O 1.34922 * 120.00537 * 359.97438 * 7 2 1 10 10 C 1.42895 * 117.00492 * 179.97438 * 9 7 2 11 11 H 1.08997 * 110.87290 * 333.85188 * 10 9 7 12 12 C 1.55402 * 111.05533 * 97.58479 * 10 9 7 13 13 C 1.54321 * 102.89883 * 153.65374 * 12 10 9 14 14 N 1.47437 * 107.36781 * 337.89400 * 13 12 10 15 15 C 1.46904 * 111.00067 * 236.66122 * 14 13 12 16 16 C 1.53004 * 117.49813 * 257.92481 * 15 14 13 17 17 C 1.52998 * 59.99933 * 252.50986 * 16 15 14 18 18 C 1.47843 * 108.56916 * 358.93128 * 14 13 12 19 19 H 0.97010 * 119.99823 * 359.97438 * 1 2 3 20 20 H 1.09001 * 110.67817 * 35.34608 * 12 10 9 21 21 H 1.08998 * 110.84812 * 272.03357 * 12 10 9 22 22 H 1.09004 * 109.88609 * 218.40904 * 13 12 10 23 23 H 1.08993 * 109.88720 * 97.38375 * 13 12 10 24 24 H 1.09001 * 115.55061 * 43.63021 * 15 14 13 25 25 H 1.08997 * 117.49853 * 0.02562 * 16 15 14 26 26 H 1.08998 * 117.49444 * 145.01667 * 16 15 14 27 27 H 1.08999 * 117.49498 * 252.51552 * 17 16 15 28 28 H 1.08994 * 117.51938 * 107.48345 * 17 16 15 29 29 H 1.09004 * 110.37497 * 142.92727 * 18 14 13 30 30 H 1.09003 * 110.37176 * 265.15009 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2499 1.6177 0.0000 4 1 2.4974 2.0464 -1.4000 5 1 1.4474 2.6526 0.7001 6 1 3.5474 1.4400 0.7001 7 6 2.0089 -1.2007 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3343 -2.3692 -0.0005 10 6 2.1125 -3.5676 -0.0017 11 1 3.0904 -3.3953 -0.4512 12 6 2.2571 -4.1408 1.4355 13 6 2.4724 -5.6483 1.1852 14 7 1.9277 -5.9548 -0.1501 15 6 0.9089 -7.0104 -0.0735 16 6 1.3227 -8.4232 -0.4901 17 6 0.4010 -7.5990 -1.3912 18 6 1.3638 -4.7148 -0.7246 19 1 -0.4850 0.8401 0.0004 20 1 1.3468 -3.9717 2.0107 21 1 3.1198 -3.7070 1.9411 22 1 1.9458 -6.2288 1.9427 23 1 3.5369 -5.8805 1.2138 24 1 0.1941 -6.9154 0.7439 25 1 2.3510 -8.5696 -0.8206 26 1 0.8803 -9.2580 0.0534 27 1 -0.6478 -7.8917 -1.4405 28 1 0.8225 -7.2029 -2.3150 29 1 1.5519 -4.6738 -1.7975 30 1 0.2937 -4.6567 -0.5253 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260156258.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:36 Heat of formation + Delta-G solvation = -24.221929 kcal Electronic energy + Delta-G solvation = -12511.498323 eV Core-core repulsion = 10307.265491 eV Total energy + Delta-G solvation = -2204.232832 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.32817 -38.16439 -36.21205 -33.79721 -30.50458 -29.53348 -26.59570 -23.27677 -23.25708 -21.75269 -21.23990 -19.78585 -17.82033 -17.31269 -16.41673 -15.80054 -15.55288 -14.79348 -14.65793 -14.54759 -13.92039 -13.55141 -13.40646 -12.78661 -12.65984 -12.51004 -12.31388 -12.12244 -11.90971 -11.35684 -11.29278 -11.21347 -10.92587 -10.15697 -9.40625 -8.19733 -5.89297 1.38974 1.45797 1.54879 2.29795 2.73555 2.93682 3.13369 3.64533 3.73918 3.94548 4.02757 4.15599 4.23267 4.30260 4.37109 4.58654 4.71243 4.81083 4.85726 4.89455 4.93748 5.08833 5.16829 5.17626 5.27312 5.33512 5.82170 6.15890 6.19663 7.23273 8.02903 9.05178 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.076702 B = 0.007545 C = 0.007203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 364.960218 B = 3710.189501 C = 3886.352967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.043 4.043 3 Si 1.007 2.993 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.258 1.258 7 C -0.375 4.375 8 H 0.073 0.927 9 O -0.323 6.323 10 C 0.075 3.925 11 H 0.053 0.947 12 C -0.157 4.157 13 C 0.057 3.943 14 N -0.499 5.499 15 C -0.028 4.028 16 C -0.140 4.140 17 C -0.171 4.171 18 C 0.061 3.939 19 H 0.261 0.739 20 H 0.051 0.949 21 H 0.075 0.925 22 H 0.069 0.931 23 H 0.092 0.908 24 H 0.084 0.916 25 H 0.099 0.901 26 H 0.115 0.885 27 H 0.108 0.892 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.333 -13.140 0.498 13.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.236 4.236 3 Si 0.828 3.172 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.182 1.182 7 C -0.454 4.454 8 H 0.091 0.909 9 O -0.237 6.237 10 C 0.016 3.984 11 H 0.071 0.929 12 C -0.196 4.196 13 C -0.071 4.071 14 N -0.225 5.225 15 C -0.137 4.137 16 C -0.177 4.177 17 C -0.208 4.208 18 C -0.067 4.067 19 H 0.070 0.930 20 H 0.070 0.930 21 H 0.093 0.907 22 H 0.088 0.912 23 H 0.110 0.890 24 H 0.102 0.898 25 H 0.118 0.882 26 H 0.134 0.866 27 H 0.126 0.874 28 H 0.109 0.891 29 H 0.096 0.904 30 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 4.408 -13.242 0.186 13.957 hybrid contribution -0.378 1.272 0.537 1.432 sum 4.030 -11.969 0.724 12.650 Atomic orbital electron populations 1.70203 1.07636 1.27264 1.53522 1.26246 0.96761 1.02050 0.98541 0.84741 0.77618 0.76105 0.78688 1.19488 1.20381 1.18246 1.21394 0.90788 0.83383 1.49844 0.90929 1.85583 1.33657 1.11701 1.92796 1.23203 0.94045 0.86282 0.94884 0.92894 1.23227 1.01615 0.96738 0.98024 1.22709 1.01527 0.93365 0.89472 1.63421 1.31326 1.06134 1.21586 1.22733 0.97566 0.93610 0.99834 1.23080 1.00666 0.92051 1.01906 1.23060 1.00414 1.03494 0.93835 1.22729 0.96971 0.87905 0.99086 0.93048 0.93043 0.90655 0.91226 0.88953 0.89833 0.88221 0.86631 0.87371 0.89103 0.90392 0.94563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.93 13.68 21.61 0.30 -60.64 16 2 C -0.04 -2.58 5.49 84.83 0.47 -2.12 16 3 Si 1.01 45.60 29.55 68.60 2.03 47.63 16 4 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 5 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 6 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 7 C -0.38 -22.56 9.83 67.92 0.67 -21.90 16 8 H 0.07 4.07 7.63 -2.91 -0.02 4.04 16 9 O -0.32 -19.25 9.59 -81.91 -0.79 -20.03 16 10 C 0.08 3.46 3.58 32.07 0.11 3.58 16 11 H 0.05 2.41 7.81 -2.39 -0.02 2.39 16 12 C -0.16 -6.10 6.71 31.87 0.21 -5.88 16 13 C 0.06 1.72 6.89 86.65 0.60 2.32 16 14 N -0.50 -16.11 5.31 -860.38 -4.57 -20.68 16 15 C -0.03 -0.77 4.63 44.92 0.21 -0.56 16 16 C -0.14 -2.83 10.46 30.60 0.32 -2.51 16 17 C -0.17 -3.93 10.20 30.59 0.31 -3.62 16 18 C 0.06 2.42 6.25 86.77 0.54 2.96 16 19 H 0.26 15.67 8.31 -92.70 -0.77 14.90 16 20 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 21 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 22 H 0.07 1.88 7.50 -2.38 -0.02 1.86 16 23 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 24 H 0.08 2.29 8.01 -2.39 -0.02 2.27 16 25 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 28 H 0.09 2.24 8.14 -2.39 -0.02 2.23 16 29 H 0.08 3.03 8.14 -2.38 -0.02 3.01 16 30 H 0.04 1.56 7.81 -2.39 -0.02 1.54 16 Total: -1.00 -70.16 255.68 1.51 -68.65 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: 1.10 Total: 12.80 kcal Atomic # 6 Polarization: -31.16 SS G_CDS: 3.44 Total: -27.72 kcal Atomic # 7 Polarization: -77.05 SS G_CDS: -4.27 Total: -81.32 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: -0.79 Total: -20.03 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -70.16 1.51 -68.65 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260156258.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.427 kcal (2) G-P(sol) polarization free energy of solvation -70.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds