Wall clock time and date at job start Mon Mar 30 2020 02:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31588 * 1 3 3 Si 1.86800 * 119.99870 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00254 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00064 * 3 2 1 7 7 C 1.38628 * 119.99638 * 180.27817 * 2 1 3 8 8 H 1.07998 * 120.00036 * 179.72374 * 7 2 1 9 9 O 1.34924 * 120.00236 * 359.72374 * 7 2 1 10 10 C 1.42908 * 116.99919 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.46956 * 179.97438 * 10 9 7 12 12 H 1.09002 * 112.74230 * 194.66921 * 11 10 9 13 13 C 1.53516 * 113.47378 * 325.43617 * 11 10 9 14 14 C 1.53639 * 83.53194 * 140.77548 * 13 11 10 15 15 N 1.47478 * 113.47830 * 63.89503 * 11 10 9 16 16 C 1.46899 * 110.99785 * 106.52727 * 15 11 10 17 17 C 1.53001 * 117.50001 * 243.74888 * 16 15 11 18 18 C 1.53004 * 117.49700 * 175.08992 * 16 15 11 19 19 H 0.97000 * 119.99811 * 179.97438 * 1 2 3 20 20 H 1.08995 * 109.47252 * 300.00208 * 10 9 7 21 21 H 1.09000 * 109.46970 * 60.00454 * 10 9 7 22 22 H 1.08997 * 114.17133 * 254.43607 * 13 11 10 23 23 H 1.08993 * 114.17520 * 27.14811 * 13 11 10 24 24 H 1.08998 * 113.51481 * 219.24511 * 14 13 11 25 25 H 1.09003 * 113.47515 * 88.79677 * 14 13 11 26 26 H 1.09003 * 115.54959 * 29.41934 * 16 15 11 27 27 H 1.08997 * 117.49985 * 0.02562 * 17 16 15 28 28 H 1.09001 * 117.49807 * 145.01995 * 17 16 15 29 29 H 1.09006 * 117.49576 * 214.98185 * 18 16 15 30 30 H 1.08998 * 117.49852 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 1.2849 2.7465 0.0006 5 1 3.1037 1.6964 1.2126 6 1 3.1035 1.6964 -1.2125 7 6 2.0089 -1.2006 -0.0058 8 1 3.0889 -1.2006 -0.0103 9 8 1.3343 -2.3691 -0.0059 10 6 2.1126 -3.5676 -0.0115 11 6 1.1806 -4.7809 -0.0100 12 1 1.6962 -5.7080 0.2406 13 6 -0.1082 -4.5611 0.7947 14 6 -0.7548 -5.3467 -0.3565 15 7 0.3456 -4.8819 -1.2214 16 6 0.8183 -5.9617 -2.0980 17 6 1.3414 -5.5706 -3.4816 18 6 -0.0115 -6.2736 -3.3451 19 1 -0.4850 -0.8401 -0.0004 20 1 2.7381 -3.5905 -0.9038 21 1 2.7448 -3.5944 0.8761 22 1 -0.1285 -5.0771 1.7546 23 1 -0.4235 -3.5196 0.8566 24 1 -1.7310 -4.9617 -0.6513 25 1 -0.7571 -6.4252 -0.1986 26 1 1.3035 -6.7978 -1.5943 27 1 1.3352 -4.5120 -3.7413 28 1 2.1706 -6.1496 -3.8883 29 1 -0.0719 -7.3148 -3.6620 30 1 -0.9084 -5.6778 -3.5148 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260167962.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:25 Heat of formation + Delta-G solvation = 0.931218 kcal Electronic energy + Delta-G solvation = -12701.022375 eV Core-core repulsion = 10497.880265 eV Total energy + Delta-G solvation = -2203.142110 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.25187 -38.19000 -36.87970 -33.83988 -29.82896 -28.89064 -26.09498 -24.08197 -23.12936 -22.13212 -20.67928 -19.92554 -17.71065 -16.87472 -16.58510 -16.23254 -15.79489 -15.45078 -14.86520 -14.37898 -14.24917 -13.40058 -12.74876 -12.61237 -12.44015 -12.24690 -12.13814 -11.90485 -11.69586 -11.57040 -11.22285 -11.12397 -10.87040 -10.12456 -9.73407 -8.62499 -5.89753 1.51242 1.63892 1.81849 2.53179 2.76072 2.86338 3.22142 3.48086 3.71456 3.86093 3.94743 3.99113 4.04323 4.35692 4.39401 4.54114 4.61762 4.67528 4.70882 4.74257 4.88702 4.94886 4.99511 5.24340 5.34682 5.35520 5.42498 6.28959 6.51212 7.23571 7.98873 8.87119 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.047232 B = 0.009139 C = 0.008602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.672051 B = 3063.218339 C = 3254.351490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.066 4.066 3 Si 1.141 2.859 4 H -0.278 1.278 5 H -0.265 1.265 6 H -0.270 1.270 7 C -0.461 4.461 8 H 0.052 0.948 9 O -0.332 6.332 10 C 0.091 3.909 11 C 0.038 3.962 12 H 0.115 0.885 13 C -0.135 4.135 14 C 0.015 3.985 15 N -0.467 5.467 16 C -0.046 4.046 17 C -0.173 4.173 18 C -0.150 4.150 19 H 0.255 0.745 20 H 0.013 0.987 21 H 0.031 0.969 22 H 0.096 0.904 23 H 0.061 0.939 24 H 0.073 0.927 25 H 0.098 0.902 26 H 0.111 0.889 27 H 0.067 0.933 28 H 0.116 0.884 29 H 0.125 0.875 30 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.147 -13.575 -2.155 13.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.258 4.258 3 Si 0.959 3.041 4 H -0.203 1.203 5 H -0.190 1.190 6 H -0.196 1.196 7 C -0.539 4.539 8 H 0.070 0.930 9 O -0.248 6.248 10 C 0.013 3.987 11 C -0.071 4.071 12 H 0.132 0.868 13 C -0.173 4.173 14 C -0.113 4.113 15 N -0.190 5.190 16 C -0.155 4.155 17 C -0.210 4.210 18 C -0.187 4.187 19 H 0.063 0.937 20 H 0.031 0.969 21 H 0.049 0.951 22 H 0.115 0.885 23 H 0.080 0.920 24 H 0.092 0.908 25 H 0.116 0.884 26 H 0.128 0.872 27 H 0.086 0.914 28 H 0.135 0.865 29 H 0.144 0.856 30 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.701 -11.419 -2.635 11.841 hybrid contribution 0.597 -2.295 0.327 2.394 sum 2.298 -13.714 -2.308 14.095 Atomic orbital electron populations 1.70706 1.07400 1.29385 1.50579 1.27912 0.97203 1.04402 0.96284 0.82602 0.73562 0.69923 0.77973 1.20262 1.19013 1.19569 1.22116 0.91529 0.85658 1.54637 0.93034 1.85336 1.33895 1.11722 1.93878 1.21973 0.92969 0.86477 0.97244 1.23542 0.95258 0.96810 0.91485 0.86761 1.22990 0.95518 1.00761 0.98007 1.23635 0.96247 0.99424 0.91979 1.68885 1.05646 1.34218 1.10247 1.23312 1.05774 0.96274 0.90124 1.22989 0.98572 1.00679 0.98778 1.23006 0.94535 1.02149 0.99042 0.93660 0.96868 0.95114 0.88534 0.92016 0.90841 0.88447 0.87193 0.91382 0.86540 0.85650 0.89866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -63.00 13.70 21.61 0.30 -62.70 16 2 C -0.07 -4.08 5.49 84.82 0.47 -3.61 16 3 Si 1.14 52.80 29.92 68.60 2.05 54.85 16 4 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 5 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 6 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 7 C -0.46 -28.86 9.89 67.91 0.67 -28.19 16 8 H 0.05 3.09 7.77 -2.91 -0.02 3.07 16 9 O -0.33 -19.91 7.66 -81.93 -0.63 -20.54 16 10 C 0.09 4.28 6.34 71.98 0.46 4.73 16 11 C 0.04 1.39 3.62 42.19 0.15 1.54 16 12 H 0.11 3.26 7.65 -2.39 -0.02 3.24 16 13 C -0.13 -4.88 7.84 30.98 0.24 -4.64 16 14 C 0.02 0.47 7.70 83.62 0.64 1.11 16 15 N -0.47 -17.24 6.37 -876.21 -5.58 -22.82 16 16 C -0.05 -1.31 4.89 44.92 0.22 -1.09 16 17 C -0.17 -4.86 10.46 30.62 0.32 -4.54 16 18 C -0.15 -3.65 10.44 30.62 0.32 -3.33 16 19 H 0.26 17.82 7.97 -92.71 -0.74 17.08 16 20 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 21 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 22 H 0.10 2.80 8.14 -2.39 -0.02 2.78 16 23 H 0.06 2.91 6.94 -2.39 -0.02 2.89 16 24 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 25 H 0.10 2.28 7.91 -2.39 -0.02 2.26 16 26 H 0.11 2.59 7.73 -2.39 -0.02 2.57 16 27 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 28 H 0.12 2.60 8.14 -2.39 -0.02 2.58 16 29 H 0.13 2.19 8.14 -2.38 -0.02 2.17 16 30 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -75.65 256.76 0.76 -74.88 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: 1.13 Total: 14.34 kcal Atomic # 6 Polarization: -41.50 SS G_CDS: 3.49 Total: -38.01 kcal Atomic # 7 Polarization: -80.24 SS G_CDS: -5.29 Total: -85.52 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -0.63 Total: -20.54 kcal Atomic # 14 Polarization: 52.80 SS G_CDS: 2.05 Total: 54.85 kcal Total: -75.65 0.76 -74.88 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260167962.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.815 kcal (2) G-P(sol) polarization free energy of solvation -75.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds