Wall clock time and date at job start Mon Mar 30 2020 02:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31574 * 1 3 3 Si 1.86803 * 120.00274 * 2 1 4 4 H 1.48496 * 109.47141 * 239.99932 * 3 2 1 5 5 H 1.48490 * 109.47071 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00209 * 3 2 1 7 7 C 1.38642 * 119.99840 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99799 * 179.97438 * 7 2 1 9 9 O 1.34925 * 119.99741 * 0.27848 * 7 2 1 10 10 C 1.42902 * 116.99891 * 179.72203 * 9 7 2 11 11 C 1.53000 * 109.47265 * 179.97438 * 10 9 7 12 12 H 1.08992 * 112.95770 * 167.14346 * 11 10 9 13 13 C 1.53936 * 113.75598 * 35.49438 * 11 10 9 14 14 C 1.53940 * 86.34145 * 221.96101 * 13 11 10 15 15 N 1.47966 * 86.18027 * 23.72253 * 14 13 11 16 16 C 1.46894 * 111.00025 * 222.41605 * 15 14 13 17 17 C 1.52999 * 117.50309 * 342.98113 * 16 15 14 18 18 C 1.52998 * 60.00061 * 252.51020 * 17 16 15 19 19 H 0.97005 * 119.99691 * 359.97438 * 1 2 3 20 20 H 1.08997 * 109.46809 * 299.99666 * 10 9 7 21 21 H 1.09005 * 109.46822 * 60.00044 * 10 9 7 22 22 H 1.09002 * 113.73880 * 336.32064 * 13 11 10 23 23 H 1.09003 * 113.73495 * 107.60527 * 13 11 10 24 24 H 1.08999 * 113.76072 * 138.03565 * 14 13 11 25 25 H 1.08995 * 113.76378 * 269.40785 * 14 13 11 26 26 H 1.09007 * 115.54863 * 128.68835 * 16 15 14 27 27 H 1.09000 * 117.49528 * 0.02562 * 17 16 15 28 28 H 1.08990 * 117.50129 * 145.01713 * 17 16 15 29 29 H 1.08994 * 117.49617 * 252.50735 * 18 17 16 30 30 H 1.08999 * 117.49967 * 107.48581 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.1036 1.6963 -1.2125 5 1 1.2849 2.7464 0.0006 6 1 3.1036 1.6963 1.2125 7 6 2.0089 -1.2007 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3342 -2.3691 -0.0067 10 6 2.1125 -3.5676 -0.0131 11 6 1.1804 -4.7809 -0.0189 12 1 1.6973 -5.7130 -0.2471 13 6 -0.1073 -4.5698 -0.8354 14 6 -0.8375 -5.2830 0.3170 15 7 0.2981 -4.8606 1.1663 16 6 0.7173 -5.9461 2.0627 17 6 -0.2602 -7.1036 2.2761 18 6 -0.0219 -6.0875 3.3948 19 1 -0.4850 0.8401 0.0004 20 1 2.7412 -3.5878 -0.9032 21 1 2.7413 -3.5972 0.8768 22 1 -0.3871 -3.5226 -0.9507 23 1 -0.1265 -5.1218 -1.7751 24 1 -1.7858 -4.8197 0.5895 25 1 -0.9118 -6.3627 0.1884 26 1 1.7816 -6.1816 2.0502 27 1 -1.2143 -7.0597 1.7508 28 1 0.1606 -8.1008 2.4037 29 1 0.5559 -6.4164 4.2586 30 1 -0.8193 -5.3750 3.6060 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260167965.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:27 Heat of formation + Delta-G solvation = 35.257485 kcal Electronic energy + Delta-G solvation = -12650.573466 eV Core-core repulsion = 10448.919855 eV Total energy + Delta-G solvation = -2201.653611 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.81176 -36.23542 -35.06489 -31.56188 -28.07097 -27.46275 -24.27213 -22.83382 -21.95663 -20.70999 -18.61970 -17.37964 -16.50371 -15.17933 -15.09748 -14.41180 -13.96447 -13.83248 -12.89542 -12.33667 -12.24097 -11.81281 -11.44507 -11.23741 -10.99085 -10.87098 -10.65418 -10.25297 -10.09543 -10.04351 -9.85422 -9.37492 -8.95106 -8.02397 -7.82123 -5.83127 -3.45009 3.38077 3.39972 3.42941 3.89830 4.34779 4.40313 4.95130 5.09327 5.13870 5.22392 5.32896 5.48655 5.55151 5.68244 5.71737 5.86255 6.01754 6.06595 6.22769 6.30980 6.36552 6.54707 6.61357 6.70741 6.96862 7.07135 7.57437 7.67244 8.54737 9.60264 10.32638 11.37931 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.056534 B = 0.008445 C = 0.008262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.154423 B = 3314.851770 C = 3388.359355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.023 3.977 3 Si 0.922 3.078 4 H -0.280 1.280 5 H -0.284 1.284 6 H -0.280 1.280 7 C -0.358 4.358 8 H 0.058 0.942 9 O -0.278 6.278 10 C 0.091 3.909 11 C 0.035 3.965 12 H 0.076 0.924 13 C -0.133 4.133 14 C -0.005 4.005 15 N -0.424 5.424 16 C -0.015 4.015 17 C -0.212 4.212 18 C -0.167 4.167 19 H 0.256 0.744 20 H 0.026 0.974 21 H 0.023 0.977 22 H 0.118 0.882 23 H 0.059 0.941 24 H 0.084 0.916 25 H 0.067 0.933 26 H 0.107 0.893 27 H 0.100 0.900 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.432 -12.028 1.367 12.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.175 4.175 3 Si 0.749 3.251 4 H -0.206 1.206 5 H -0.210 1.210 6 H -0.206 1.206 7 C -0.438 4.438 8 H 0.076 0.924 9 O -0.193 6.193 10 C 0.013 3.987 11 C -0.073 4.073 12 H 0.094 0.906 13 C -0.170 4.170 14 C -0.134 4.134 15 N -0.145 5.145 16 C -0.124 4.124 17 C -0.251 4.251 18 C -0.204 4.204 19 H 0.066 0.934 20 H 0.043 0.957 21 H 0.041 0.959 22 H 0.136 0.864 23 H 0.077 0.923 24 H 0.103 0.897 25 H 0.085 0.915 26 H 0.125 0.875 27 H 0.118 0.882 28 H 0.107 0.893 29 H 0.109 0.891 30 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.038 -11.346 1.811 11.490 hybrid contribution 0.950 -0.036 -0.245 0.982 sum 0.989 -11.382 1.567 11.532 Atomic orbital electron populations 1.70012 1.05264 1.25667 1.52066 1.24884 0.95598 0.97482 0.99497 0.86100 0.78547 0.82173 0.78250 1.20556 1.20974 1.20551 1.20754 0.90030 0.83099 1.49895 0.92440 1.85661 1.30831 1.09784 1.93048 1.21747 0.92109 0.87340 0.97546 1.23539 0.95472 0.97349 0.90985 0.90596 1.23317 0.94464 1.03876 0.95378 1.24025 0.96853 0.98251 0.94224 1.68641 1.03960 1.32245 1.09656 1.23286 0.96631 0.93768 0.98759 1.23441 1.02137 0.94730 1.04789 1.22943 1.03732 1.01649 0.92115 0.93402 0.95654 0.95874 0.86357 0.92254 0.89742 0.91498 0.87498 0.88196 0.89293 0.89100 0.88414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -28.26 13.67 55.48 0.76 -27.50 16 2 C 0.02 0.70 5.49 -17.51 -0.10 0.61 16 3 Si 0.92 22.63 29.55 -169.99 -5.02 17.61 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.36 -10.81 9.89 30.88 0.31 -10.51 16 8 H 0.06 1.64 7.77 -52.49 -0.41 1.23 16 9 O -0.28 -8.09 8.28 -16.50 -0.14 -8.22 16 10 C 0.09 2.08 6.36 37.16 0.24 2.32 16 11 C 0.04 0.67 3.79 -66.65 -0.25 0.42 16 12 H 0.08 1.21 7.92 -51.93 -0.41 0.79 16 13 C -0.13 -2.48 7.69 -25.80 -0.20 -2.67 16 14 C -0.01 -0.09 6.97 -2.76 -0.02 -0.11 16 15 N -0.42 -8.15 6.27 -222.72 -1.40 -9.55 16 16 C -0.01 -0.23 5.82 -67.72 -0.39 -0.62 16 17 C -0.21 -2.70 9.24 -26.73 -0.25 -2.95 16 18 C -0.17 -2.35 10.46 -26.73 -0.28 -2.63 16 19 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 20 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 21 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.12 2.75 6.94 -51.93 -0.36 2.39 16 23 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 24 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 25 H 0.07 0.93 6.04 -51.93 -0.31 0.62 16 26 H 0.11 1.59 8.04 -51.92 -0.42 1.17 16 27 H 0.10 1.25 6.07 -51.93 -0.32 0.94 16 28 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.10 1.50 8.14 -51.93 -0.42 1.07 16 LS Contribution 252.89 15.07 3.81 3.81 Total: -1.00 -33.23 252.89 -7.25 -40.48 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: -4.32 Total: -0.47 kcal Atomic # 6 Polarization: -15.21 SS G_CDS: -0.95 Total: -16.15 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: -0.64 Total: -37.05 kcal Atomic # 8 Polarization: -8.09 SS G_CDS: -0.14 Total: -8.22 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -33.23 -7.25 -40.48 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260167965.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.735 kcal (2) G-P(sol) polarization free energy of solvation -33.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds