Wall clock time and date at job start Mon Mar 30 2020 02:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31574 * 1 3 3 Si 1.86803 * 120.00274 * 2 1 4 4 H 1.48496 * 109.47141 * 239.99932 * 3 2 1 5 5 H 1.48490 * 109.47071 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00209 * 3 2 1 7 7 C 1.38642 * 119.99840 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99799 * 179.97438 * 7 2 1 9 9 O 1.34925 * 119.99741 * 0.27848 * 7 2 1 10 10 C 1.42902 * 116.99891 * 179.72203 * 9 7 2 11 11 C 1.53000 * 109.47265 * 179.97438 * 10 9 7 12 12 H 1.08992 * 112.95770 * 167.14346 * 11 10 9 13 13 C 1.53936 * 113.75598 * 35.49438 * 11 10 9 14 14 C 1.53940 * 86.34145 * 221.96101 * 13 11 10 15 15 N 1.47966 * 86.18027 * 23.72253 * 14 13 11 16 16 C 1.46894 * 111.00025 * 222.41605 * 15 14 13 17 17 C 1.52999 * 117.50309 * 342.98113 * 16 15 14 18 18 C 1.52998 * 60.00061 * 252.51020 * 17 16 15 19 19 H 0.97005 * 119.99691 * 359.97438 * 1 2 3 20 20 H 1.08997 * 109.46809 * 299.99666 * 10 9 7 21 21 H 1.09005 * 109.46822 * 60.00044 * 10 9 7 22 22 H 1.09002 * 113.73880 * 336.32064 * 13 11 10 23 23 H 1.09003 * 113.73495 * 107.60527 * 13 11 10 24 24 H 1.08999 * 113.76072 * 138.03565 * 14 13 11 25 25 H 1.08995 * 113.76378 * 269.40785 * 14 13 11 26 26 H 1.09007 * 115.54863 * 128.68835 * 16 15 14 27 27 H 1.09000 * 117.49528 * 0.02562 * 17 16 15 28 28 H 1.08990 * 117.50129 * 145.01713 * 17 16 15 29 29 H 1.08994 * 117.49617 * 252.50735 * 18 17 16 30 30 H 1.08999 * 117.49967 * 107.48581 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.1036 1.6963 -1.2125 5 1 1.2849 2.7464 0.0006 6 1 3.1036 1.6963 1.2125 7 6 2.0089 -1.2007 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3342 -2.3691 -0.0067 10 6 2.1125 -3.5676 -0.0131 11 6 1.1804 -4.7809 -0.0189 12 1 1.6973 -5.7130 -0.2471 13 6 -0.1073 -4.5698 -0.8354 14 6 -0.8375 -5.2830 0.3170 15 7 0.2981 -4.8606 1.1663 16 6 0.7173 -5.9461 2.0627 17 6 -0.2602 -7.1036 2.2761 18 6 -0.0219 -6.0875 3.3948 19 1 -0.4850 0.8401 0.0004 20 1 2.7412 -3.5878 -0.9032 21 1 2.7413 -3.5972 0.8768 22 1 -0.3871 -3.5226 -0.9507 23 1 -0.1265 -5.1218 -1.7751 24 1 -1.7858 -4.8197 0.5895 25 1 -0.9118 -6.3627 0.1884 26 1 1.7816 -6.1816 2.0502 27 1 -1.2143 -7.0597 1.7508 28 1 0.1606 -8.1008 2.4037 29 1 0.5559 -6.4164 4.2586 30 1 -0.8193 -5.3750 3.6060 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260167965.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:27 Heat of formation + Delta-G solvation = 10.664246 kcal Electronic energy + Delta-G solvation = -12651.639909 eV Core-core repulsion = 10448.919855 eV Total energy + Delta-G solvation = -2202.720054 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.18299 -38.06541 -36.51790 -33.81024 -29.80285 -28.83222 -26.48618 -24.29605 -23.15187 -21.97380 -20.15671 -19.50082 -17.82576 -17.10484 -16.48233 -16.13051 -15.78153 -15.51726 -14.36344 -14.06544 -13.65264 -13.62362 -13.05026 -12.83102 -12.71565 -12.30240 -12.08982 -11.96115 -11.70587 -11.48588 -11.29221 -11.09042 -10.95095 -10.06899 -9.30991 -8.11488 -5.79434 1.39574 1.47640 1.54377 2.36202 2.71259 3.10009 3.21616 3.60336 3.82528 3.92132 3.99300 4.02085 4.14347 4.40051 4.51408 4.53028 4.72233 4.76360 4.80191 4.86409 4.99082 5.02772 5.10597 5.25708 5.26573 5.48945 5.60427 6.26001 6.35035 7.30972 8.16309 9.12903 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.056534 B = 0.008445 C = 0.008262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.154423 B = 3314.851770 C = 3388.359355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.041 4.041 3 Si 1.002 2.998 4 H -0.263 1.263 5 H -0.279 1.279 6 H -0.268 1.268 7 C -0.380 4.380 8 H 0.066 0.934 9 O -0.313 6.313 10 C 0.082 3.918 11 C 0.042 3.958 12 H 0.116 0.884 13 C -0.135 4.135 14 C 0.009 3.991 15 N -0.469 5.469 16 C -0.039 4.039 17 C -0.181 4.181 18 C -0.176 4.176 19 H 0.258 0.742 20 H 0.036 0.964 21 H 0.017 0.983 22 H 0.062 0.938 23 H 0.091 0.909 24 H 0.071 0.929 25 H 0.105 0.895 26 H 0.115 0.885 27 H 0.103 0.897 28 H 0.118 0.882 29 H 0.109 0.891 30 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.338 -13.362 1.402 13.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.234 4.234 3 Si 0.825 3.175 4 H -0.188 1.188 5 H -0.204 1.204 6 H -0.193 1.193 7 C -0.459 4.459 8 H 0.084 0.916 9 O -0.228 6.228 10 C 0.004 3.996 11 C -0.067 4.067 12 H 0.134 0.866 13 C -0.173 4.173 14 C -0.118 4.118 15 N -0.190 5.190 16 C -0.149 4.149 17 C -0.219 4.219 18 C -0.213 4.213 19 H 0.067 0.933 20 H 0.054 0.946 21 H 0.035 0.965 22 H 0.080 0.920 23 H 0.109 0.891 24 H 0.089 0.911 25 H 0.123 0.877 26 H 0.133 0.867 27 H 0.121 0.879 28 H 0.136 0.864 29 H 0.128 0.872 30 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.957 -12.710 1.848 12.879 hybrid contribution 0.679 0.292 -0.226 0.773 sum 1.636 -12.418 1.622 12.630 Atomic orbital electron populations 1.70207 1.07431 1.26899 1.53419 1.26145 0.96715 1.01768 0.98789 0.84877 0.77254 0.76294 0.79108 1.18796 1.20412 1.19309 1.21299 0.90683 0.84181 1.49770 0.91601 1.85635 1.32875 1.11087 1.93234 1.22056 0.93065 0.86959 0.97527 1.23555 0.94899 0.96856 0.91346 0.86604 1.23142 0.95155 1.01257 0.97741 1.24010 0.95527 0.99958 0.92348 1.68537 1.04824 1.35072 1.10614 1.23368 0.97733 0.94692 0.99098 1.23491 1.01146 0.94934 1.02368 1.23003 1.03327 1.02249 0.92752 0.93343 0.94640 0.96506 0.91957 0.89091 0.91053 0.87706 0.86740 0.87858 0.86427 0.87229 0.90449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -61.38 13.67 21.61 0.30 -61.08 16 2 C -0.04 -2.51 5.49 84.83 0.47 -2.04 16 3 Si 1.00 46.75 29.55 68.60 2.03 48.77 16 4 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 6 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 7 C -0.38 -23.45 9.89 67.92 0.67 -22.78 16 8 H 0.07 3.80 7.77 -2.91 -0.02 3.78 16 9 O -0.31 -18.81 8.28 -81.94 -0.68 -19.49 16 10 C 0.08 3.78 6.36 71.98 0.46 4.24 16 11 C 0.04 1.56 3.79 45.02 0.17 1.73 16 12 H 0.12 3.32 7.92 -2.39 -0.02 3.30 16 13 C -0.14 -5.03 7.69 31.24 0.24 -4.79 16 14 C 0.01 0.30 6.97 86.41 0.60 0.90 16 15 N -0.47 -17.78 6.27 -858.54 -5.38 -23.16 16 16 C -0.04 -1.16 5.82 44.92 0.26 -0.90 16 17 C -0.18 -3.97 9.24 30.59 0.28 -3.69 16 18 C -0.18 -4.67 10.46 30.59 0.32 -4.35 16 19 H 0.26 15.82 8.31 -92.70 -0.77 15.05 16 20 H 0.04 1.54 8.14 -2.39 -0.02 1.53 16 21 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 22 H 0.06 3.05 6.94 -2.39 -0.02 3.03 16 23 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 24 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 25 H 0.11 2.56 6.04 -2.39 -0.01 2.54 16 26 H 0.11 3.13 8.04 -2.38 -0.02 3.12 16 27 H 0.10 2.21 6.07 -2.39 -0.01 2.19 16 28 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 30 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 Total: -1.00 -74.26 252.89 0.84 -73.42 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: 1.11 Total: 13.22 kcal Atomic # 6 Polarization: -35.15 SS G_CDS: 3.47 Total: -31.68 kcal Atomic # 7 Polarization: -79.16 SS G_CDS: -5.09 Total: -84.25 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: -0.68 Total: -19.49 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.77 kcal Total: -74.26 0.84 -73.42 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260167965.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.080 kcal (2) G-P(sol) polarization free energy of solvation -74.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds