Wall clock time and date at job start Mon Mar 30 2020 02:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.29024 * 126.43648 * 2 1 4 4 N 1.28734 * 108.80878 * 180.02562 * 3 2 1 5 5 N 1.28844 * 109.39650 * 359.97438 * 4 3 2 6 6 C 1.31065 * 107.99138 * 359.97438 * 5 4 3 7 7 C 1.50696 * 126.66131 * 179.97438 * 6 5 4 8 8 H 1.09000 * 109.47249 * 165.02699 * 7 6 5 9 9 N 1.46906 * 109.46989 * 45.02965 * 7 6 5 10 10 C 1.52998 * 109.47525 * 285.03234 * 7 6 5 11 11 C 1.50700 * 109.47538 * 184.99553 * 10 7 6 12 12 H 1.08007 * 119.99826 * 0.02562 * 11 10 7 13 13 C 1.37876 * 120.00477 * 179.97438 * 11 10 7 14 14 N 1.31508 * 120.00228 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 119.99667 * 0.02562 * 13 11 10 16 16 H 1.48504 * 109.47301 * 89.99660 * 15 13 11 17 17 H 1.48503 * 109.47108 * 209.99532 * 15 13 11 18 18 H 1.48500 * 109.47032 * 329.99538 * 15 13 11 19 19 H 1.08996 * 109.46799 * 90.02894 * 1 2 3 20 20 H 1.08994 * 109.46872 * 210.02499 * 1 2 3 21 21 H 1.08998 * 109.47195 * 330.02802 * 1 2 3 22 22 H 1.00898 * 111.00286 * 176.04360 * 9 7 6 23 23 H 1.00893 * 111.00072 * 300.00379 * 9 7 6 24 24 H 1.08996 * 109.47132 * 304.99802 * 10 7 6 25 25 H 1.09004 * 109.47026 * 64.99796 * 10 7 6 26 26 H 0.96994 * 120.00034 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2314 1.0380 0.0000 4 7 3.4583 0.6482 -0.0005 5 7 3.4980 -0.6397 -0.0004 6 6 2.2646 -1.0828 0.0009 7 6 1.8265 -2.5246 0.0010 8 1 0.7712 -2.5838 0.2677 9 7 2.6218 -3.2780 0.9798 10 6 2.0346 -3.1211 -1.3925 11 6 1.4840 -4.5236 -1.4260 12 1 1.0306 -4.9470 -0.5419 13 6 1.5582 -5.2658 -2.5856 14 7 1.0773 -6.4895 -2.6150 15 14 2.3419 -4.5332 -4.1148 16 1 3.7953 -4.8382 -4.1209 17 1 1.7085 -5.1178 -5.3241 18 1 2.1449 -3.0614 -4.1153 19 1 -0.3633 -0.0005 -1.0276 20 1 -0.3633 -0.8897 0.5142 21 1 -0.3633 0.8902 0.5134 22 1 2.3040 -4.2333 1.0455 23 1 3.6044 -3.2384 0.7545 24 1 1.5160 -2.5095 -2.1307 25 1 3.0998 -3.1434 -1.6227 26 1 1.1299 -7.0117 -3.4306 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260198483.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:21 Heat of formation + Delta-G solvation = 108.986516 kcal Electronic energy + Delta-G solvation = -12440.715037 eV Core-core repulsion = 10171.010965 eV Total energy + Delta-G solvation = -2269.704073 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.097 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.81500 -36.29168 -35.29163 -32.70739 -31.39023 -28.83901 -28.28279 -25.37465 -23.08127 -22.20809 -20.20652 -17.65800 -16.94773 -16.84043 -15.36471 -14.52767 -14.38736 -13.65453 -13.59126 -13.33557 -12.85212 -12.36349 -12.18960 -11.87035 -11.33078 -10.93227 -10.74680 -10.59569 -10.53617 -10.08057 -9.67872 -9.50105 -8.76789 -8.16279 -6.27557 -4.29998 1.55901 2.25908 2.61474 3.17996 3.26235 3.29730 4.26092 4.35384 4.45785 4.92369 4.92477 5.06565 5.21325 5.37891 5.69682 5.93202 6.00585 6.05523 6.41758 6.77239 6.94183 7.45421 7.61180 8.00122 8.21703 8.71703 8.94724 9.33300 10.84233 Molecular weight = 197.10amu Principal moments of inertia in cm(-1) A = 0.044929 B = 0.010517 C = 0.010144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.057174 B = 2661.802772 C = 2759.530824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.313 5.313 3 N -0.113 5.113 4 N -0.084 5.084 5 N -0.304 5.304 6 C 0.216 3.784 7 C 0.182 3.818 8 H 0.097 0.903 9 N -0.833 5.833 10 C -0.035 4.035 11 C -0.532 4.532 12 H 0.079 0.921 13 C 0.077 3.923 14 N -0.892 5.892 15 Si 0.877 3.123 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.268 1.268 19 H 0.097 0.903 20 H 0.107 0.893 21 H 0.102 0.898 22 H 0.362 0.638 23 H 0.346 0.654 24 H 0.019 0.981 25 H 0.026 0.974 26 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.024 8.715 3.714 9.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.115 5.115 3 N -0.099 5.099 4 N -0.078 5.078 5 N -0.153 5.153 6 C -0.063 4.063 7 C 0.067 3.933 8 H 0.115 0.885 9 N -0.365 5.365 10 C -0.075 4.075 11 C -0.570 4.570 12 H 0.097 0.903 13 C -0.127 4.127 14 N -0.529 5.529 15 Si 0.704 3.296 16 H -0.199 1.199 17 H -0.211 1.211 18 H -0.193 1.193 19 H 0.115 0.885 20 H 0.126 0.874 21 H 0.121 0.879 22 H 0.178 0.822 23 H 0.158 0.842 24 H 0.037 0.963 25 H 0.044 0.956 26 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.360 10.101 4.148 11.172 hybrid contribution -0.228 -0.860 -1.814 2.020 sum -2.589 9.242 2.334 9.877 Atomic orbital electron populations 1.22371 0.71846 1.06263 1.05683 1.48314 1.10574 1.04329 1.48246 1.78744 0.98130 1.13005 1.20052 1.78506 1.09793 1.04454 1.15087 1.74933 1.18026 1.02854 1.19467 1.26575 0.86339 0.94751 0.98630 1.19903 0.97806 0.80651 0.94936 0.88498 1.58990 1.08114 1.19873 1.49528 1.20321 0.98042 0.97645 0.91525 1.20872 1.40415 0.96107 0.99562 0.90324 1.24928 0.94490 0.94541 0.98695 1.69877 1.45273 1.09297 1.28466 0.86826 0.80091 0.79850 0.82827 1.19921 1.21090 1.19315 0.88483 0.87409 0.87902 0.82218 0.84172 0.96301 0.95609 0.92335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.78 11.21 59.85 0.67 1.45 15 2 N -0.31 -4.92 3.75 -65.03 -0.24 -5.16 15 3 N -0.11 -2.01 13.29 60.35 0.80 -1.20 15 4 N -0.08 -1.68 13.43 60.35 0.81 -0.87 15 5 N -0.30 -6.14 12.25 32.70 0.40 -5.74 15 6 C 0.22 3.92 6.95 -155.44 -1.08 2.84 15 7 C 0.18 3.30 3.14 -68.86 -0.22 3.08 15 8 H 0.10 1.58 6.86 -51.93 -0.36 1.22 15 9 N -0.83 -14.57 9.18 -5.65 -0.05 -14.62 15 10 C -0.04 -0.77 3.67 -27.88 -0.10 -0.87 15 11 C -0.53 -13.41 9.10 -34.44 -0.31 -13.73 15 12 H 0.08 2.07 7.39 -52.48 -0.39 1.68 15 13 C 0.08 2.07 5.47 -17.82 -0.10 1.97 15 14 N -0.89 -25.49 13.96 55.43 0.77 -24.72 15 15 Si 0.88 20.77 27.47 -169.99 -4.67 16.11 15 16 H -0.27 -6.48 7.11 56.52 0.40 -6.08 15 17 H -0.29 -6.70 7.11 56.52 0.40 -6.30 15 18 H -0.27 -6.26 6.54 56.52 0.37 -5.89 15 19 H 0.10 0.82 8.14 -51.93 -0.42 0.40 15 20 H 0.11 0.88 7.01 -51.93 -0.36 0.52 15 21 H 0.10 0.74 8.14 -51.93 -0.42 0.32 15 22 H 0.36 6.32 7.90 -39.29 -0.31 6.01 15 23 H 0.35 6.15 8.90 -39.30 -0.35 5.80 15 24 H 0.02 0.42 7.20 -51.93 -0.37 0.04 15 25 H 0.03 0.59 7.57 -51.93 -0.39 0.20 15 26 H 0.27 7.20 8.31 -40.82 -0.34 6.86 15 LS Contribution 231.05 15.07 3.48 3.48 Total: -1.00 -30.79 231.05 -2.38 -33.17 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -2.55 Total: 4.80 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: -1.14 Total: -5.25 kcal Atomic # 7 Polarization: -54.80 SS G_CDS: 2.49 Total: -52.31 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.67 Total: 16.11 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -30.79 -2.38 -33.17 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260198483.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.159 kcal (2) G-P(sol) polarization free energy of solvation -30.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds