Wall clock time and date at job start Mon Mar 30 2020 02:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.29024 * 126.43648 * 2 1 4 4 N 1.28734 * 108.80878 * 180.02562 * 3 2 1 5 5 N 1.28844 * 109.39650 * 359.97438 * 4 3 2 6 6 C 1.31065 * 107.99138 * 359.97438 * 5 4 3 7 7 C 1.50696 * 126.66131 * 179.97438 * 6 5 4 8 8 H 1.09000 * 109.47249 * 165.02699 * 7 6 5 9 9 N 1.46906 * 109.46989 * 45.02965 * 7 6 5 10 10 C 1.52998 * 109.47525 * 285.03234 * 7 6 5 11 11 C 1.50700 * 109.47538 * 184.99553 * 10 7 6 12 12 H 1.08007 * 119.99826 * 0.02562 * 11 10 7 13 13 C 1.37876 * 120.00477 * 179.97438 * 11 10 7 14 14 N 1.31508 * 120.00228 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 119.99667 * 0.02562 * 13 11 10 16 16 H 1.48504 * 109.47301 * 89.99660 * 15 13 11 17 17 H 1.48503 * 109.47108 * 209.99532 * 15 13 11 18 18 H 1.48500 * 109.47032 * 329.99538 * 15 13 11 19 19 H 1.08996 * 109.46799 * 90.02894 * 1 2 3 20 20 H 1.08994 * 109.46872 * 210.02499 * 1 2 3 21 21 H 1.08998 * 109.47195 * 330.02802 * 1 2 3 22 22 H 1.00898 * 111.00286 * 176.04360 * 9 7 6 23 23 H 1.00893 * 111.00072 * 300.00379 * 9 7 6 24 24 H 1.08996 * 109.47132 * 304.99802 * 10 7 6 25 25 H 1.09004 * 109.47026 * 64.99796 * 10 7 6 26 26 H 0.96994 * 120.00034 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2314 1.0380 0.0000 4 7 3.4583 0.6482 -0.0005 5 7 3.4980 -0.6397 -0.0004 6 6 2.2646 -1.0828 0.0009 7 6 1.8265 -2.5246 0.0010 8 1 0.7712 -2.5838 0.2677 9 7 2.6218 -3.2780 0.9798 10 6 2.0346 -3.1211 -1.3925 11 6 1.4840 -4.5236 -1.4260 12 1 1.0306 -4.9470 -0.5419 13 6 1.5582 -5.2658 -2.5856 14 7 1.0773 -6.4895 -2.6150 15 14 2.3419 -4.5332 -4.1148 16 1 3.7953 -4.8382 -4.1209 17 1 1.7085 -5.1178 -5.3241 18 1 2.1449 -3.0614 -4.1153 19 1 -0.3633 -0.0005 -1.0276 20 1 -0.3633 -0.8897 0.5142 21 1 -0.3633 0.8902 0.5134 22 1 2.3040 -4.2333 1.0455 23 1 3.6044 -3.2384 0.7545 24 1 1.5160 -2.5095 -2.1307 25 1 3.0998 -3.1434 -1.6227 26 1 1.1299 -7.0117 -3.4306 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260198483.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:21 Heat of formation + Delta-G solvation = 84.470277 kcal Electronic energy + Delta-G solvation = -12441.778141 eV Core-core repulsion = 10171.010965 eV Total energy + Delta-G solvation = -2270.767176 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.097 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -45.18372 -37.82733 -36.55353 -34.64660 -32.83603 -30.58537 -29.31661 -26.96540 -24.53425 -23.73489 -21.74272 -19.33974 -18.33562 -18.21468 -16.87197 -16.32712 -15.95118 -15.10987 -14.66887 -14.56719 -14.44583 -14.18830 -13.50534 -13.18284 -12.99676 -12.66871 -12.38408 -12.15939 -11.91814 -11.80172 -11.46693 -11.08905 -10.82037 -9.64109 -8.33300 -6.37290 0.21447 1.12813 1.16653 1.30542 1.35645 1.41919 2.29941 2.99799 3.03319 3.26229 3.84111 3.89314 4.26488 4.34851 4.41133 4.46358 4.62205 4.78310 4.98821 5.20890 5.21744 5.52078 6.14260 6.17468 6.56425 6.70290 7.28396 7.54851 8.81210 Molecular weight = 197.10amu Principal moments of inertia in cm(-1) A = 0.044929 B = 0.010517 C = 0.010144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.057174 B = 2661.802772 C = 2759.530824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.297 5.297 3 N -0.107 5.107 4 N -0.112 5.112 5 N -0.327 5.327 6 C 0.205 3.795 7 C 0.193 3.807 8 H 0.120 0.880 9 N -0.827 5.827 10 C -0.030 4.030 11 C -0.520 4.520 12 H 0.063 0.937 13 C 0.024 3.976 14 N -0.935 5.935 15 Si 0.930 3.070 16 H -0.275 1.275 17 H -0.283 1.283 18 H -0.260 1.260 19 H 0.114 0.886 20 H 0.126 0.874 21 H 0.131 0.869 22 H 0.361 0.639 23 H 0.344 0.656 24 H 0.020 0.980 25 H 0.014 0.986 26 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.772 9.935 3.756 11.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.100 5.100 3 N -0.094 5.094 4 N -0.106 5.106 5 N -0.177 5.177 6 C -0.074 4.074 7 C 0.078 3.922 8 H 0.138 0.862 9 N -0.359 5.359 10 C -0.070 4.070 11 C -0.558 4.558 12 H 0.081 0.919 13 C -0.175 4.175 14 N -0.575 5.575 15 Si 0.755 3.245 16 H -0.200 1.200 17 H -0.209 1.209 18 H -0.185 1.185 19 H 0.133 0.867 20 H 0.145 0.855 21 H 0.150 0.850 22 H 0.177 0.823 23 H 0.156 0.844 24 H 0.038 0.962 25 H 0.032 0.968 26 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.126 11.343 4.199 12.493 hybrid contribution -0.083 -1.208 -1.758 2.135 sum -3.208 10.135 2.441 10.907 Atomic orbital electron populations 1.22998 0.68424 1.08734 1.07604 1.48699 1.12293 1.03006 1.45984 1.78660 0.97903 1.13518 1.19324 1.78489 1.10865 1.04462 1.16787 1.74849 1.19547 1.03236 1.20061 1.26386 0.86361 0.95087 0.99559 1.19754 0.99136 0.80600 0.92743 0.86245 1.58999 1.08010 1.19817 1.49035 1.20214 0.96869 0.95874 0.94076 1.21127 1.38730 0.97416 0.98550 0.91913 1.25640 0.95384 0.94885 1.01569 1.69986 1.47479 1.10736 1.29282 0.85981 0.79067 0.79487 0.79950 1.20035 1.20851 1.18464 0.86749 0.85531 0.85047 0.82262 0.84362 0.96198 0.96755 0.92361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.96 11.21 127.77 1.43 2.39 15 2 N -0.30 -8.50 3.75 -359.66 -1.35 -9.84 15 3 N -0.11 -3.58 13.29 37.02 0.49 -3.08 15 4 N -0.11 -4.33 13.43 37.01 0.50 -3.83 15 5 N -0.33 -12.82 12.25 -50.46 -0.62 -13.44 15 6 C 0.21 7.03 6.95 138.14 0.96 7.99 15 7 C 0.19 6.56 3.14 44.17 0.14 6.70 15 8 H 0.12 3.52 6.86 -2.39 -0.02 3.50 15 9 N -0.83 -27.71 9.18 -171.80 -1.58 -29.29 15 10 C -0.03 -1.25 3.67 29.85 0.11 -1.14 15 11 C -0.52 -25.75 9.10 25.60 0.23 -25.52 15 12 H 0.06 3.26 7.39 -2.91 -0.02 3.24 15 13 C 0.02 1.30 5.47 84.66 0.46 1.76 15 14 N -0.94 -53.63 13.96 21.45 0.30 -53.33 15 15 Si 0.93 42.18 27.47 68.60 1.88 44.07 15 16 H -0.27 -12.43 7.11 99.48 0.71 -11.73 15 17 H -0.28 -12.64 7.11 99.48 0.71 -11.93 15 18 H -0.26 -11.36 6.54 99.48 0.65 -10.71 15 19 H 0.11 1.48 8.14 -2.39 -0.02 1.46 15 20 H 0.13 1.54 7.01 -2.39 -0.02 1.53 15 21 H 0.13 1.34 8.14 -2.39 -0.02 1.32 15 22 H 0.36 12.22 7.90 -89.70 -0.71 11.51 15 23 H 0.34 11.89 8.90 -89.70 -0.80 11.09 15 24 H 0.02 0.83 7.20 -2.39 -0.02 0.81 15 25 H 0.01 0.63 7.57 -2.38 -0.02 0.61 15 26 H 0.27 14.52 8.31 -92.71 -0.77 13.75 15 Total: -1.00 -64.73 231.05 2.62 -62.11 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -0.34 Total: 14.46 kcal Atomic # 6 Polarization: -11.16 SS G_CDS: 3.34 Total: -7.82 kcal Atomic # 7 Polarization: -110.56 SS G_CDS: -2.26 Total: -112.82 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 1.88 Total: 44.07 kcal Total: -64.73 2.62 -62.11 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260198483.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.578 kcal (2) G-P(sol) polarization free energy of solvation -64.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds