Wall clock time and date at job start Mon Mar 30 2020 02:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31578 * 1 3 3 Si 1.86799 * 120.00283 * 2 1 4 4 H 1.48493 * 109.47266 * 269.99795 * 3 2 1 5 5 H 1.48500 * 109.46925 * 30.00016 * 3 2 1 6 6 H 1.48501 * 109.47249 * 149.99822 * 3 2 1 7 7 C 1.38641 * 119.99868 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99670 * 0.02562 * 7 2 1 9 9 O 1.34922 * 120.00188 * 180.02562 * 7 2 1 10 10 C 1.42898 * 117.00215 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47319 * 180.02562 * 10 9 7 12 12 C 1.53935 * 113.73611 * 273.76890 * 11 10 9 13 13 N 1.48181 * 86.10469 * 221.95628 * 12 11 10 14 14 C 1.46898 * 111.07347 * 137.51624 * 13 12 11 15 15 C 1.53008 * 117.49665 * 149.18867 * 14 13 12 16 16 C 1.53004 * 60.00001 * 252.51497 * 15 14 13 17 17 C 1.47961 * 90.79696 * 24.59739 * 13 12 11 18 18 H 0.96998 * 119.99747 * 0.02562 * 1 2 3 19 19 H 1.09002 * 109.47259 * 300.00352 * 10 9 7 20 20 H 1.09001 * 109.47074 * 60.00374 * 10 9 7 21 21 H 1.09006 * 112.93811 * 45.33123 * 11 10 9 22 22 H 1.08998 * 113.75751 * 336.23999 * 12 11 10 23 23 H 1.09005 * 113.76340 * 107.59763 * 12 11 10 24 24 H 1.08996 * 115.55429 * 294.89678 * 14 13 12 25 25 H 1.09000 * 117.50013 * 359.97438 * 15 14 13 26 26 H 1.09002 * 117.49646 * 145.03065 * 15 14 13 27 27 H 1.09002 * 117.49879 * 252.51190 * 16 15 14 28 28 H 1.08998 * 117.50045 * 107.49220 * 16 15 14 29 29 H 1.09007 * 113.75937 * 221.08136 * 17 13 12 30 30 H 1.08996 * 113.85796 * 89.73718 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2499 1.6177 0.0000 4 1 2.4974 2.0463 -1.4000 5 1 1.4473 2.6526 0.7000 6 1 3.5474 1.4401 0.7001 7 6 2.0090 -1.2007 0.0005 8 1 1.4689 -2.1360 0.0005 9 8 3.3582 -1.2008 0.0011 10 6 4.0069 -2.4740 0.0022 11 6 5.5237 -2.2736 0.0033 12 6 6.1270 -2.1013 -1.4024 13 7 7.2179 -2.9872 -0.9326 14 6 7.5809 -3.9698 -1.9624 15 6 9.0345 -4.4458 -2.0035 16 6 8.5069 -3.5042 -3.0880 17 6 6.3222 -3.5873 0.0807 18 1 -0.4850 0.8400 -0.0004 19 1 3.7136 -3.0305 0.8924 20 1 3.7144 -3.0316 -0.8876 21 1 5.8519 -1.5180 0.7171 22 1 5.5201 -2.5355 -2.1970 23 1 6.4494 -1.0831 -1.6202 24 1 6.8065 -4.6941 -2.2150 25 1 9.7215 -4.0295 -1.2668 26 1 9.2165 -5.4835 -2.2832 27 1 8.3418 -3.9224 -4.0809 28 1 8.8467 -2.4688 -3.0643 29 1 6.8005 -3.7544 1.0458 30 1 5.7720 -4.4574 -0.2774 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260211041.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:19 Heat of formation + Delta-G solvation = 25.471871 kcal Electronic energy + Delta-G solvation = -12286.735408 eV Core-core repulsion = 10084.657461 eV Total energy + Delta-G solvation = -2202.077947 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.88644 -36.67574 -35.67801 -31.87084 -29.22207 -25.94446 -25.03562 -23.17435 -22.35239 -20.42258 -19.37889 -17.48188 -16.41344 -15.90701 -15.13059 -14.73427 -14.24051 -13.66633 -13.24280 -13.08803 -12.44387 -12.24338 -11.80175 -11.59066 -11.21840 -10.90978 -10.61213 -10.55140 -10.19045 -10.06024 -9.91306 -9.52383 -9.26240 -8.72274 -8.14725 -5.98151 -3.65654 3.43871 3.46687 3.63982 3.66398 3.91002 4.57501 4.62566 4.82558 4.87572 4.92625 5.05319 5.35122 5.49007 5.53006 5.54708 5.63134 5.79000 5.87638 5.89885 6.02275 6.06365 6.08386 6.27615 6.41586 6.45930 6.70257 7.19851 7.93189 8.37934 9.42027 9.97793 11.14735 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.067541 B = 0.007214 C = 0.006933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 414.460545 B = 3880.668949 C = 4037.948746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.043 3.957 3 Si 0.907 3.093 4 H -0.282 1.282 5 H -0.291 1.291 6 H -0.264 1.264 7 C -0.358 4.358 8 H 0.077 0.923 9 O -0.332 6.332 10 C 0.093 3.907 11 C -0.111 4.111 12 C 0.017 3.983 13 N -0.458 5.458 14 C -0.030 4.030 15 C -0.164 4.164 16 C -0.169 4.169 17 C 0.015 3.985 18 H 0.269 0.731 19 H 0.033 0.967 20 H 0.029 0.971 21 H 0.103 0.897 22 H 0.072 0.928 23 H 0.088 0.912 24 H 0.090 0.910 25 H 0.098 0.902 26 H 0.091 0.909 27 H 0.093 0.907 28 H 0.098 0.902 29 H 0.088 0.912 30 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.195 -7.251 -3.342 17.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.154 4.154 3 Si 0.735 3.265 4 H -0.208 1.208 5 H -0.218 1.218 6 H -0.188 1.188 7 C -0.436 4.436 8 H 0.095 0.905 9 O -0.247 6.247 10 C 0.015 3.985 11 C -0.130 4.130 12 C -0.111 4.111 13 N -0.181 5.181 14 C -0.139 4.139 15 C -0.202 4.202 16 C -0.207 4.207 17 C -0.114 4.114 18 H 0.079 0.921 19 H 0.051 0.949 20 H 0.047 0.953 21 H 0.121 0.879 22 H 0.090 0.910 23 H 0.106 0.894 24 H 0.108 0.892 25 H 0.117 0.883 26 H 0.110 0.890 27 H 0.111 0.889 28 H 0.116 0.884 29 H 0.106 0.894 30 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 15.831 -6.710 -3.159 17.482 hybrid contribution -0.610 0.053 -0.386 0.724 sum 15.220 -6.657 -3.545 16.987 Atomic orbital electron populations 1.69689 1.05378 1.27196 1.53758 1.24321 0.94856 0.98273 0.97933 0.86141 0.80011 0.82172 0.78154 1.20785 1.21771 1.18850 1.20377 0.78575 0.95053 1.49568 0.90498 1.85218 1.20393 1.25128 1.94007 1.22024 0.89803 0.88020 0.98672 1.22978 0.94735 0.97555 0.97763 1.23945 0.91330 0.98755 0.97088 1.68394 1.29594 1.12089 1.08005 1.23107 0.93846 0.99127 0.97829 1.22961 0.96256 0.99089 1.01855 1.22952 1.03530 1.00535 0.93656 1.23896 0.93414 0.96583 0.97491 0.92141 0.94924 0.95329 0.87888 0.90973 0.89379 0.89245 0.88327 0.89025 0.88865 0.88364 0.89365 0.91189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.70 13.96 55.48 0.77 -27.92 16 2 C 0.04 1.30 5.49 -17.51 -0.10 1.21 16 3 Si 0.91 23.51 28.62 -169.99 -4.86 18.65 16 4 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.26 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.36 -10.70 10.35 30.88 0.32 -10.38 16 8 H 0.08 2.39 8.00 -52.48 -0.42 1.97 16 9 O -0.33 -8.83 8.61 -16.49 -0.14 -8.97 16 10 C 0.09 1.93 5.85 37.16 0.22 2.15 16 11 C -0.11 -1.89 4.18 -89.69 -0.38 -2.27 16 12 C 0.02 0.26 7.56 -2.64 -0.02 0.24 16 13 N -0.46 -6.52 6.41 -230.07 -1.47 -7.99 16 14 C -0.03 -0.36 4.85 -67.71 -0.33 -0.69 16 15 C -0.16 -1.70 10.46 -26.72 -0.28 -1.98 16 16 C -0.17 -1.82 10.46 -26.73 -0.28 -2.10 16 17 C 0.01 0.21 7.55 -2.76 -0.02 0.18 16 18 H 0.27 7.87 8.31 -40.82 -0.34 7.53 16 19 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 20 H 0.03 0.58 7.88 -51.93 -0.41 0.17 16 21 H 0.10 1.82 8.14 -51.93 -0.42 1.40 16 22 H 0.07 1.13 7.71 -51.93 -0.40 0.73 16 23 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 24 H 0.09 1.07 7.83 -51.93 -0.41 0.66 16 25 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.09 1.12 8.14 -51.92 -0.42 0.69 16 30 H 0.07 0.91 7.68 -51.93 -0.40 0.51 16 LS Contribution 258.22 15.07 3.89 3.89 Total: -1.00 -31.84 258.22 -7.23 -39.07 By element: Atomic # 1 Polarization: 1.47 SS G_CDS: -4.55 Total: -3.09 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: -0.86 Total: -13.63 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: -0.70 Total: -35.91 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: -0.14 Total: -8.97 kcal Atomic # 14 Polarization: 23.51 SS G_CDS: -4.86 Total: 18.65 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -31.84 -7.23 -39.07 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260211041.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.538 kcal (2) G-P(sol) polarization free energy of solvation -31.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds