Wall clock time and date at job start Mon Mar 30 2020 02:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31578 * 1 3 3 Si 1.86799 * 120.00283 * 2 1 4 4 H 1.48493 * 109.47266 * 269.99795 * 3 2 1 5 5 H 1.48500 * 109.46925 * 30.00016 * 3 2 1 6 6 H 1.48501 * 109.47249 * 149.99822 * 3 2 1 7 7 C 1.38641 * 119.99868 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99670 * 0.02562 * 7 2 1 9 9 O 1.34922 * 120.00188 * 180.02562 * 7 2 1 10 10 C 1.42898 * 117.00215 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47319 * 180.02562 * 10 9 7 12 12 C 1.53935 * 113.73611 * 273.76890 * 11 10 9 13 13 N 1.48181 * 86.10469 * 221.95628 * 12 11 10 14 14 C 1.46898 * 111.07347 * 137.51624 * 13 12 11 15 15 C 1.53008 * 117.49665 * 149.18867 * 14 13 12 16 16 C 1.53004 * 60.00001 * 252.51497 * 15 14 13 17 17 C 1.47961 * 90.79696 * 24.59739 * 13 12 11 18 18 H 0.96998 * 119.99747 * 0.02562 * 1 2 3 19 19 H 1.09002 * 109.47259 * 300.00352 * 10 9 7 20 20 H 1.09001 * 109.47074 * 60.00374 * 10 9 7 21 21 H 1.09006 * 112.93811 * 45.33123 * 11 10 9 22 22 H 1.08998 * 113.75751 * 336.23999 * 12 11 10 23 23 H 1.09005 * 113.76340 * 107.59763 * 12 11 10 24 24 H 1.08996 * 115.55429 * 294.89678 * 14 13 12 25 25 H 1.09000 * 117.50013 * 359.97438 * 15 14 13 26 26 H 1.09002 * 117.49646 * 145.03065 * 15 14 13 27 27 H 1.09002 * 117.49879 * 252.51190 * 16 15 14 28 28 H 1.08998 * 117.50045 * 107.49220 * 16 15 14 29 29 H 1.09007 * 113.75937 * 221.08136 * 17 13 12 30 30 H 1.08996 * 113.85796 * 89.73718 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2499 1.6177 0.0000 4 1 2.4974 2.0463 -1.4000 5 1 1.4473 2.6526 0.7000 6 1 3.5474 1.4401 0.7001 7 6 2.0090 -1.2007 0.0005 8 1 1.4689 -2.1360 0.0005 9 8 3.3582 -1.2008 0.0011 10 6 4.0069 -2.4740 0.0022 11 6 5.5237 -2.2736 0.0033 12 6 6.1270 -2.1013 -1.4024 13 7 7.2179 -2.9872 -0.9326 14 6 7.5809 -3.9698 -1.9624 15 6 9.0345 -4.4458 -2.0035 16 6 8.5069 -3.5042 -3.0880 17 6 6.3222 -3.5873 0.0807 18 1 -0.4850 0.8400 -0.0004 19 1 3.7136 -3.0305 0.8924 20 1 3.7144 -3.0316 -0.8876 21 1 5.8519 -1.5180 0.7171 22 1 5.5201 -2.5355 -2.1970 23 1 6.4494 -1.0831 -1.6202 24 1 6.8065 -4.6941 -2.2150 25 1 9.7215 -4.0295 -1.2668 26 1 9.2165 -5.4835 -2.2832 27 1 8.3418 -3.9224 -4.0809 28 1 8.8467 -2.4688 -3.0643 29 1 6.8005 -3.7544 1.0458 30 1 5.7720 -4.4574 -0.2774 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260211041.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:19 Heat of formation + Delta-G solvation = 2.838890 kcal Electronic energy + Delta-G solvation = -12287.716847 eV Core-core repulsion = 10084.657461 eV Total energy + Delta-G solvation = -2203.059387 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.06474 -38.41869 -36.89349 -34.13737 -30.71016 -27.12708 -26.87463 -24.95064 -23.15928 -21.48348 -20.76824 -19.62093 -17.75219 -17.43459 -16.68730 -16.01367 -15.75229 -15.33064 -14.69295 -14.65170 -14.05024 -13.68637 -13.57406 -12.95433 -12.46414 -12.36853 -12.19341 -11.96168 -11.81896 -11.48297 -11.30982 -11.15305 -10.97876 -10.38666 -9.83437 -8.29027 -5.99835 1.38268 1.41669 1.60765 2.43436 2.74268 2.85500 3.03579 3.18422 3.60292 3.94868 4.01388 4.06668 4.14402 4.36088 4.43198 4.49504 4.59842 4.70106 4.77517 4.79620 4.88444 4.91841 5.04523 5.18999 5.28686 5.29645 5.56747 6.10804 6.13295 7.10005 7.79537 8.86907 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.067541 B = 0.007214 C = 0.006933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 414.460545 B = 3880.668949 C = 4037.948746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.014 4.014 3 Si 0.977 3.023 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.362 4.362 8 H 0.048 0.952 9 O -0.346 6.346 10 C 0.087 3.913 11 C -0.114 4.114 12 C 0.017 3.983 13 N -0.460 5.460 14 C -0.053 4.053 15 C -0.149 4.149 16 C -0.166 4.166 17 C 0.028 3.972 18 H 0.275 0.725 19 H 0.034 0.966 20 H 0.031 0.969 21 H 0.096 0.904 22 H 0.070 0.930 23 H 0.085 0.915 24 H 0.093 0.907 25 H 0.095 0.905 26 H 0.112 0.888 27 H 0.109 0.891 28 H 0.091 0.909 29 H 0.104 0.896 30 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.140 -7.284 -3.680 18.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.207 4.207 3 Si 0.800 3.200 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.441 4.441 8 H 0.066 0.934 9 O -0.263 6.263 10 C 0.010 3.990 11 C -0.133 4.133 12 C -0.111 4.111 13 N -0.182 5.182 14 C -0.162 4.162 15 C -0.187 4.187 16 C -0.204 4.204 17 C -0.101 4.101 18 H 0.084 0.916 19 H 0.052 0.948 20 H 0.049 0.951 21 H 0.114 0.886 22 H 0.088 0.912 23 H 0.103 0.897 24 H 0.111 0.889 25 H 0.114 0.886 26 H 0.130 0.870 27 H 0.127 0.873 28 H 0.109 0.891 29 H 0.123 0.877 30 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 17.791 -6.766 -3.499 19.353 hybrid contribution -1.203 -0.062 -0.291 1.239 sum 16.588 -6.829 -3.789 18.334 Atomic orbital electron populations 1.69796 1.06971 1.28541 1.54733 1.25227 0.95801 1.02068 0.97587 0.85100 0.78565 0.77614 0.78672 1.19724 1.20417 1.18674 1.20372 0.80085 0.94213 1.49402 0.93416 1.85161 1.18520 1.28455 1.94131 1.22332 0.91925 0.86006 0.98733 1.22969 0.91914 0.99693 0.98765 1.23893 0.91888 0.99182 0.96138 1.68371 1.28673 1.12620 1.08574 1.23211 0.95106 0.99435 0.98435 1.23034 0.94342 1.00120 1.01162 1.23025 1.02584 1.00494 0.94273 1.23894 0.92670 0.95096 0.98408 0.91615 0.94769 0.95127 0.88588 0.91203 0.89699 0.88902 0.88613 0.86971 0.87286 0.89082 0.87732 0.90204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.43 13.96 21.61 0.30 -60.12 16 2 C -0.01 -0.83 5.49 84.83 0.47 -0.36 16 3 Si 0.98 48.24 28.62 68.60 1.96 50.20 16 4 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 5 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 6 H -0.26 -12.78 7.11 99.48 0.71 -12.07 16 7 C -0.36 -22.04 10.35 67.92 0.70 -21.34 16 8 H 0.05 3.09 8.00 -2.91 -0.02 3.07 16 9 O -0.35 -18.48 8.61 -81.91 -0.71 -19.19 16 10 C 0.09 3.61 5.85 71.98 0.42 4.04 16 11 C -0.11 -3.77 4.18 -10.15 -0.04 -3.81 16 12 C 0.02 0.52 7.56 86.37 0.65 1.18 16 13 N -0.46 -12.19 6.41 -881.81 -5.65 -17.84 16 14 C -0.05 -1.17 4.85 44.92 0.22 -0.95 16 15 C -0.15 -2.65 10.46 30.60 0.32 -2.33 16 16 C -0.17 -3.17 10.46 30.60 0.32 -2.85 16 17 C 0.03 0.71 7.55 86.41 0.65 1.36 16 18 H 0.27 16.13 8.31 -92.71 -0.77 15.36 16 19 H 0.03 1.39 8.14 -2.39 -0.02 1.38 16 20 H 0.03 1.25 7.88 -2.39 -0.02 1.23 16 21 H 0.10 3.31 8.14 -2.38 -0.02 3.29 16 22 H 0.07 2.13 7.71 -2.39 -0.02 2.11 16 23 H 0.08 2.61 8.14 -2.38 -0.02 2.59 16 24 H 0.09 2.01 7.83 -2.39 -0.02 1.99 16 25 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.10 2.37 8.14 -2.38 -0.02 2.35 16 30 H 0.08 1.90 7.68 -2.39 -0.02 1.88 16 Total: -1.00 -67.29 258.22 0.72 -66.57 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: 1.10 Total: 5.44 kcal Atomic # 6 Polarization: -28.78 SS G_CDS: 3.71 Total: -25.06 kcal Atomic # 7 Polarization: -72.61 SS G_CDS: -5.35 Total: -77.96 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: -0.71 Total: -19.19 kcal Atomic # 14 Polarization: 48.24 SS G_CDS: 1.96 Total: 50.20 kcal Total: -67.29 0.72 -66.57 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260211041.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.413 kcal (2) G-P(sol) polarization free energy of solvation -67.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds