Wall clock time and date at job start Mon Mar 30 2020 01:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29942 * 126.28577 * 2 1 4 4 O 1.21299 * 110.25116 * 180.02562 * 3 2 1 5 5 C 1.33649 * 109.81002 * 0.02562 * 4 3 2 6 6 C 1.50705 * 126.54862 * 179.97438 * 5 4 3 7 7 H 1.09000 * 109.46773 * 180.02562 * 6 5 4 8 8 C 1.50701 * 109.47247 * 60.02828 * 6 5 4 9 9 H 1.08003 * 119.99371 * 275.15064 * 8 6 5 10 10 C 1.37871 * 120.00210 * 94.87311 * 8 6 5 11 11 N 1.31518 * 120.00197 * 354.93191 * 10 8 6 12 12 Si 1.86800 * 120.00082 * 174.93831 * 10 8 6 13 13 H 1.48501 * 109.47147 * 59.99982 * 12 10 8 14 14 H 1.48496 * 109.47122 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.46710 * 299.99891 * 12 10 8 16 16 C 1.52995 * 109.47182 * 300.02267 * 6 5 4 17 17 N 1.46897 * 109.47131 * 185.41880 * 16 6 5 18 18 N 1.31123 * 106.89511 * 0.22564 * 5 4 3 19 19 H 1.09002 * 109.46800 * 89.97474 * 1 2 3 20 20 H 1.08997 * 109.47014 * 209.97525 * 1 2 3 21 21 H 1.08999 * 109.47230 * 329.97256 * 1 2 3 22 22 H 0.96994 * 120.00431 * 180.02562 * 11 10 8 23 23 H 1.09001 * 109.47665 * 305.42272 * 16 6 5 24 24 H 1.09009 * 109.47048 * 65.42013 * 16 6 5 25 25 H 1.00900 * 111.00121 * 174.30066 * 17 16 6 26 26 H 1.00900 * 111.00408 * 298.26052 * 17 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2760 1.0474 0.0000 4 8 3.4418 0.7124 -0.0005 5 6 3.5298 -0.6212 -0.0015 6 6 4.7970 -1.4370 -0.0029 7 1 4.5461 -2.4977 -0.0039 8 6 5.6045 -1.1129 1.2276 9 1 6.2713 -0.2634 1.2275 10 6 5.4876 -1.8976 2.3552 11 7 4.6001 -2.8673 2.3925 12 14 6.5899 -1.5831 3.8302 13 1 6.3671 -0.2023 4.3293 14 1 6.2676 -2.5555 4.9053 15 1 8.0108 -1.7412 3.4288 16 6 5.6156 -1.1054 -1.2521 17 7 6.7851 -1.9917 -1.3207 18 7 2.3030 -1.0841 -0.0064 19 1 -0.3633 0.0005 -1.0277 20 1 -0.3633 -0.8902 0.5134 21 1 -0.3633 0.8897 0.5142 22 1 4.5176 -3.4191 3.1860 23 1 4.9988 -1.2484 -2.1394 24 1 5.9480 -0.0683 -1.2040 25 1 7.2912 -1.8565 -2.1831 26 1 7.3879 -1.8576 -0.5228 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260408739.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:32 Heat of formation + Delta-G solvation = 52.945147 kcal Electronic energy + Delta-G solvation = -12516.215954 eV Core-core repulsion = 10211.788994 eV Total energy + Delta-G solvation = -2304.426960 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.090 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -44.41065 -35.64863 -34.91874 -32.50241 -31.84767 -28.91500 -27.95979 -24.64814 -22.69525 -21.83337 -19.69121 -17.12936 -16.78462 -15.97011 -15.06136 -14.86555 -14.19094 -13.37899 -13.09497 -12.88198 -12.74671 -12.04340 -11.64374 -11.59670 -11.14839 -10.90619 -10.74981 -10.41267 -9.93491 -9.73351 -9.52824 -8.80691 -8.62631 -7.87090 -6.27404 -4.40002 2.27925 3.19948 3.27012 3.27728 3.34589 4.11479 4.24210 4.59164 4.94962 5.17002 5.49677 5.74540 5.88446 5.91985 6.16034 6.25339 6.47905 6.57581 6.99728 7.07415 7.43324 7.64166 7.90482 7.97910 8.28050 8.71949 9.26373 9.31183 10.78745 Molecular weight = 197.09amu Principal moments of inertia in cm(-1) A = 0.032184 B = 0.013468 C = 0.010943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.785506 B = 2078.492556 C = 2558.055500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 C 0.149 3.851 3 N -0.422 5.422 4 O 0.055 5.945 5 C 0.243 3.757 6 C 0.117 3.883 7 H 0.109 0.891 8 C -0.528 4.528 9 H 0.065 0.935 10 C 0.075 3.925 11 N -0.861 5.861 12 Si 0.901 3.099 13 H -0.275 1.275 14 H -0.285 1.285 15 H -0.270 1.270 16 C 0.078 3.922 17 N -0.839 5.839 18 N -0.509 5.509 19 H 0.078 0.922 20 H 0.084 0.916 21 H 0.076 0.924 22 H 0.269 0.731 23 H 0.048 0.952 24 H 0.019 0.981 25 H 0.324 0.676 26 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.943 3.118 -4.041 5.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.124 4.124 3 N -0.138 5.138 4 O 0.002 5.998 5 C 0.024 3.976 6 C 0.096 3.904 7 H 0.127 0.873 8 C -0.565 4.565 9 H 0.083 0.917 10 C -0.133 4.133 11 N -0.494 5.494 12 Si 0.728 3.272 13 H -0.201 1.201 14 H -0.210 1.210 15 H -0.195 1.195 16 C -0.054 4.054 17 N -0.369 5.369 18 N -0.243 5.243 19 H 0.096 0.904 20 H 0.103 0.897 21 H 0.094 0.906 22 H 0.079 0.921 23 H 0.066 0.934 24 H 0.037 0.963 25 H 0.135 0.865 26 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -2.186 2.845 -3.891 5.293 hybrid contribution 1.060 1.009 1.018 1.782 sum -1.126 3.854 -2.873 4.937 Atomic orbital electron populations 1.19939 0.84473 1.03642 1.03087 1.25768 0.99994 0.85049 1.01632 1.74441 0.90248 1.24757 1.24340 1.85177 1.21354 1.26564 1.66720 1.30841 0.97940 0.80499 0.88331 1.17893 0.82585 0.95959 0.93932 0.87293 1.20860 1.24562 1.14329 0.96788 0.91661 1.25130 0.94776 0.94480 0.98876 1.69966 1.31802 1.18240 1.29401 0.86500 0.81002 0.78228 0.81483 1.20079 1.21012 1.19529 1.21683 0.92835 0.93383 0.97457 1.58495 1.12179 1.59380 1.06808 1.71984 1.00267 1.28538 1.23519 0.90359 0.89741 0.90551 0.92103 0.93363 0.96254 0.86522 0.83415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.82 10.51 36.01 0.38 -0.45 15 2 C 0.15 3.22 8.22 -156.38 -1.28 1.94 15 3 N -0.42 -9.62 12.16 30.90 0.38 -9.25 15 4 O 0.05 1.31 11.31 18.09 0.20 1.51 15 5 C 0.24 5.96 7.00 -13.06 -0.09 5.87 15 6 C 0.12 2.84 2.53 -92.92 -0.24 2.60 15 7 H 0.11 2.97 7.38 -51.93 -0.38 2.58 15 8 C -0.53 -13.46 7.44 -34.44 -0.26 -13.72 15 9 H 0.07 1.62 7.82 -52.48 -0.41 1.21 15 10 C 0.08 1.97 5.45 -17.82 -0.10 1.88 15 11 N -0.86 -23.98 12.84 55.43 0.71 -23.27 15 12 Si 0.90 20.22 29.54 -169.99 -5.02 15.20 15 13 H -0.28 -6.24 7.11 56.52 0.40 -5.84 15 14 H -0.28 -6.40 7.11 56.52 0.40 -5.99 15 15 H -0.27 -5.83 7.11 56.52 0.40 -5.43 15 16 C 0.08 1.57 6.19 -3.83 -0.02 1.55 15 17 N -0.84 -15.25 9.57 -10.37 -0.10 -15.35 15 18 N -0.51 -12.49 11.55 -9.87 -0.11 -12.60 15 19 H 0.08 1.03 8.14 -51.93 -0.42 0.61 15 20 H 0.08 1.24 8.14 -51.93 -0.42 0.82 15 21 H 0.08 1.05 8.14 -51.93 -0.42 0.62 15 22 H 0.27 7.15 8.31 -40.82 -0.34 6.81 15 23 H 0.05 0.92 8.14 -51.93 -0.42 0.50 15 24 H 0.02 0.37 8.14 -51.92 -0.42 -0.05 15 25 H 0.32 4.74 9.08 -39.29 -0.36 4.39 15 26 H 0.35 6.51 8.24 -39.29 -0.32 6.18 15 LS Contribution 237.18 15.07 3.57 3.57 Total: -1.00 -29.40 237.18 -4.70 -34.11 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -2.72 Total: 6.40 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: -1.61 Total: -0.33 kcal Atomic # 7 Polarization: -61.34 SS G_CDS: 0.87 Total: -60.47 kcal Atomic # 8 Polarization: 1.31 SS G_CDS: 0.20 Total: 1.51 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -29.40 -4.70 -34.11 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260408739.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.051 kcal (2) G-P(sol) polarization free energy of solvation -29.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds