Wall clock time and date at job start Mon Mar 30 2020 01:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29942 * 126.28577 * 2 1 4 4 O 1.21299 * 110.25116 * 180.02562 * 3 2 1 5 5 C 1.33649 * 109.81002 * 0.02562 * 4 3 2 6 6 C 1.50705 * 126.54862 * 179.97438 * 5 4 3 7 7 H 1.09000 * 109.46773 * 180.02562 * 6 5 4 8 8 C 1.50701 * 109.47247 * 60.02828 * 6 5 4 9 9 H 1.08003 * 119.99371 * 275.15064 * 8 6 5 10 10 C 1.37871 * 120.00210 * 94.87311 * 8 6 5 11 11 N 1.31518 * 120.00197 * 354.93191 * 10 8 6 12 12 Si 1.86800 * 120.00082 * 174.93831 * 10 8 6 13 13 H 1.48501 * 109.47147 * 59.99982 * 12 10 8 14 14 H 1.48496 * 109.47122 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.46710 * 299.99891 * 12 10 8 16 16 C 1.52995 * 109.47182 * 300.02267 * 6 5 4 17 17 N 1.46897 * 109.47131 * 185.41880 * 16 6 5 18 18 N 1.31123 * 106.89511 * 0.22564 * 5 4 3 19 19 H 1.09002 * 109.46800 * 89.97474 * 1 2 3 20 20 H 1.08997 * 109.47014 * 209.97525 * 1 2 3 21 21 H 1.08999 * 109.47230 * 329.97256 * 1 2 3 22 22 H 0.96994 * 120.00431 * 180.02562 * 11 10 8 23 23 H 1.09001 * 109.47665 * 305.42272 * 16 6 5 24 24 H 1.09009 * 109.47048 * 65.42013 * 16 6 5 25 25 H 1.00900 * 111.00121 * 174.30066 * 17 16 6 26 26 H 1.00900 * 111.00408 * 298.26052 * 17 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2760 1.0474 0.0000 4 8 3.4418 0.7124 -0.0005 5 6 3.5298 -0.6212 -0.0015 6 6 4.7970 -1.4370 -0.0029 7 1 4.5461 -2.4977 -0.0039 8 6 5.6045 -1.1129 1.2276 9 1 6.2713 -0.2634 1.2275 10 6 5.4876 -1.8976 2.3552 11 7 4.6001 -2.8673 2.3925 12 14 6.5899 -1.5831 3.8302 13 1 6.3671 -0.2023 4.3293 14 1 6.2676 -2.5555 4.9053 15 1 8.0108 -1.7412 3.4288 16 6 5.6156 -1.1054 -1.2521 17 7 6.7851 -1.9917 -1.3207 18 7 2.3030 -1.0841 -0.0064 19 1 -0.3633 0.0005 -1.0277 20 1 -0.3633 -0.8902 0.5134 21 1 -0.3633 0.8897 0.5142 22 1 4.5176 -3.4191 3.1860 23 1 4.9988 -1.2484 -2.1394 24 1 5.9480 -0.0683 -1.2040 25 1 7.2912 -1.8565 -2.1831 26 1 7.3879 -1.8576 -0.5228 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260408739.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:32 Heat of formation + Delta-G solvation = 29.754684 kcal Electronic energy + Delta-G solvation = -12517.221568 eV Core-core repulsion = 10211.788994 eV Total energy + Delta-G solvation = -2305.432574 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.090 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -46.20311 -37.42428 -36.66915 -34.34352 -33.58401 -30.52332 -29.60244 -26.56213 -24.46947 -23.53357 -21.47329 -18.98491 -18.62468 -17.82759 -16.70225 -16.64579 -15.92597 -14.96605 -14.67282 -14.35326 -14.26144 -13.61150 -13.40051 -13.25067 -12.95868 -12.68347 -12.48564 -12.16931 -11.77477 -11.54532 -11.43034 -10.75524 -10.46641 -9.36472 -8.25861 -6.44031 0.45491 1.43336 1.44888 1.52626 1.56569 2.25225 2.37579 2.95145 3.19783 3.39567 4.01531 4.36976 4.54413 4.58872 4.61378 4.72195 4.86311 4.98597 5.25733 5.26571 5.47375 5.65039 5.98725 6.45921 6.73015 6.92954 7.28069 7.46576 8.80605 Molecular weight = 197.09amu Principal moments of inertia in cm(-1) A = 0.032184 B = 0.013468 C = 0.010943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.785506 B = 2078.492556 C = 2558.055500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 C 0.151 3.849 3 N -0.432 5.432 4 O 0.042 5.958 5 C 0.234 3.766 6 C 0.118 3.882 7 H 0.074 0.926 8 C -0.532 4.532 9 H 0.071 0.929 10 C 0.026 3.974 11 N -0.900 5.900 12 Si 0.964 3.036 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.253 1.253 16 C 0.088 3.912 17 N -0.843 5.843 18 N -0.536 5.536 19 H 0.107 0.893 20 H 0.092 0.908 21 H 0.097 0.903 22 H 0.267 0.733 23 H 0.057 0.943 24 H 0.028 0.972 25 H 0.347 0.653 26 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.853 3.850 -4.200 5.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.122 4.122 3 N -0.150 5.150 4 O -0.007 6.007 5 C 0.015 3.985 6 C 0.097 3.903 7 H 0.092 0.908 8 C -0.570 4.570 9 H 0.089 0.911 10 C -0.177 4.177 11 N -0.535 5.535 12 Si 0.788 3.212 13 H -0.203 1.203 14 H -0.213 1.213 15 H -0.177 1.177 16 C -0.044 4.044 17 N -0.375 5.375 18 N -0.271 5.271 19 H 0.125 0.875 20 H 0.111 0.889 21 H 0.116 0.884 22 H 0.076 0.924 23 H 0.075 0.925 24 H 0.046 0.954 25 H 0.160 0.840 26 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -2.055 3.592 -4.079 5.811 hybrid contribution 0.956 0.794 1.001 1.595 sum -1.099 4.386 -3.078 5.470 Atomic orbital electron populations 1.20254 0.80304 1.05131 1.05395 1.26798 1.02269 0.83776 0.99317 1.74423 0.89968 1.25134 1.25525 1.85151 1.22164 1.26107 1.67276 1.30830 0.98225 0.80953 0.88521 1.17813 0.82924 0.93989 0.95591 0.90824 1.21134 1.24430 1.14171 0.97242 0.91134 1.25922 0.95950 0.94277 1.01588 1.70101 1.33741 1.19560 1.30089 0.85521 0.80048 0.77573 0.78056 1.20274 1.21262 1.17717 1.21515 0.93079 0.94059 0.95745 1.58407 1.12040 1.58971 1.08046 1.72005 1.00808 1.29971 1.24345 0.87503 0.88880 0.88383 0.92358 0.92490 0.95393 0.83997 0.83552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.50 10.51 71.24 0.75 -0.75 15 2 C 0.15 6.37 8.22 138.46 1.14 7.51 15 3 N -0.43 -19.28 12.16 -60.33 -0.73 -20.02 15 4 O 0.04 1.99 11.31 74.78 0.85 2.84 15 5 C 0.23 11.52 7.00 88.38 0.62 12.14 15 6 C 0.12 5.75 2.53 -12.29 -0.03 5.72 15 7 H 0.07 4.12 7.38 -2.39 -0.02 4.10 15 8 C -0.53 -27.07 7.44 25.60 0.19 -26.88 15 9 H 0.07 3.44 7.82 -2.91 -0.02 3.42 15 10 C 0.03 1.38 5.45 84.65 0.46 1.84 15 11 N -0.90 -50.91 12.84 21.45 0.28 -50.64 15 12 Si 0.96 41.24 29.54 68.60 2.03 43.26 15 13 H -0.28 -11.86 7.11 99.48 0.71 -11.15 15 14 H -0.29 -12.29 7.11 99.48 0.71 -11.58 15 15 H -0.25 -10.05 7.11 99.48 0.71 -9.35 15 16 C 0.09 3.47 6.19 86.30 0.53 4.00 15 17 N -0.84 -29.60 9.57 -186.72 -1.79 -31.39 15 18 N -0.54 -26.25 11.55 -303.21 -3.50 -29.75 15 19 H 0.11 2.46 8.14 -2.39 -0.02 2.44 15 20 H 0.09 2.50 8.14 -2.39 -0.02 2.48 15 21 H 0.10 2.37 8.14 -2.39 -0.02 2.35 15 22 H 0.27 14.45 8.31 -92.71 -0.77 13.68 15 23 H 0.06 2.12 8.14 -2.39 -0.02 2.10 15 24 H 0.03 1.05 8.14 -2.38 -0.02 1.03 15 25 H 0.35 9.46 9.08 -89.69 -0.81 8.65 15 26 H 0.35 12.56 8.24 -89.69 -0.74 11.82 15 Total: -1.00 -62.58 237.18 0.44 -62.13 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: -0.34 Total: 19.99 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: 3.66 Total: 3.57 kcal Atomic # 7 Polarization: -126.04 SS G_CDS: -5.75 Total: -131.79 kcal Atomic # 8 Polarization: 1.99 SS G_CDS: 0.85 Total: 2.84 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.26 kcal Total: -62.58 0.44 -62.13 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260408739.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.886 kcal (2) G-P(sol) polarization free energy of solvation -62.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds