Wall clock time and date at job start Mon Mar 30 2020 02:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99968 * 2 1 4 4 H 1.48497 * 109.46875 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47016 * 300.00164 * 3 2 1 6 6 H 1.48504 * 109.46810 * 59.99718 * 3 2 1 7 7 C 1.37877 * 119.99852 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99535 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00186 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47570 * 180.02562 * 9 7 2 11 11 C 1.53511 * 114.17498 * 184.99832 * 10 9 7 12 12 N 1.47480 * 87.93237 * 220.13683 * 11 10 9 13 13 C 1.46899 * 110.99826 * 138.69966 * 12 11 10 14 14 C 1.53376 * 114.56246 * 69.45053 * 13 12 11 15 15 O 1.43352 * 88.44647 * 139.57815 * 14 13 12 16 16 C 1.43352 * 88.31944 * 331.84943 * 15 14 13 17 17 C 1.47483 * 87.83772 * 27.01012 * 12 11 10 18 18 H 0.96999 * 120.00264 * 0.02562 * 1 2 3 19 19 H 1.09001 * 109.47721 * 59.99727 * 9 7 2 20 20 H 1.09008 * 109.47455 * 299.99911 * 9 7 2 21 21 H 1.09004 * 113.25138 * 317.95111 * 10 9 7 22 22 H 1.08995 * 113.47437 * 105.36967 * 11 10 9 23 23 H 1.09000 * 113.52997 * 334.91584 * 11 10 9 24 24 H 1.08994 * 113.57117 * 295.17495 * 13 12 11 25 25 H 1.08991 * 113.39048 * 24.67933 * 14 13 12 26 26 H 1.08998 * 113.38659 * 254.47083 * 14 13 12 27 27 H 1.09001 * 113.39396 * 143.05961 * 16 15 14 28 28 H 1.09007 * 113.38957 * 273.25265 * 16 15 14 29 29 H 1.09002 * 113.47482 * 87.75178 * 17 12 11 30 30 H 1.08993 * 113.47881 * 218.22270 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 6 1.5933 -5.0465 -0.1246 12 7 2.5696 -5.5354 0.8668 13 6 1.9317 -6.4415 1.8312 14 6 1.5017 -7.7932 1.2478 15 8 1.9622 -8.4161 2.4540 16 6 2.9053 -7.3460 2.5966 17 6 2.6355 -4.1607 1.3970 18 1 -0.4850 0.8400 -0.0004 19 1 0.6247 -2.5563 -0.8919 20 1 0.6240 -2.5575 0.8881 21 1 3.0907 -3.5057 -0.6715 22 1 1.7128 -5.4965 -1.1101 23 1 0.5630 -5.0753 0.2298 24 1 1.1795 -5.9565 2.4532 25 1 2.0713 -8.0846 0.3655 26 1 0.4250 -7.8782 1.1009 27 1 3.0587 -7.0393 3.6313 28 1 3.8416 -7.5207 2.0663 29 1 1.8833 -3.9523 2.1579 30 1 3.6381 -3.8602 1.7011 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260446096.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:23 Heat of formation + Delta-G solvation = 19.554302 kcal Electronic energy + Delta-G solvation = -12414.036628 eV Core-core repulsion = 10211.702075 eV Total energy + Delta-G solvation = -2202.334552 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.94166 -38.81323 -33.20717 -31.05856 -28.50427 -26.49550 -25.28085 -24.88913 -22.27542 -20.06877 -18.81403 -16.45767 -16.37973 -16.22924 -15.71393 -14.96615 -14.44087 -13.71576 -13.25137 -12.61697 -12.45934 -12.22551 -11.89819 -11.60366 -11.11667 -10.87270 -10.55700 -10.40775 -10.24560 -9.75715 -9.65177 -9.42562 -9.06567 -8.54202 -8.36355 -6.03268 -4.05447 3.29433 3.37307 3.41401 3.96447 4.10190 4.35803 4.43848 5.01083 5.26770 5.30466 5.31524 5.36263 5.38401 5.50485 5.82095 5.86451 5.91339 5.97844 6.06212 6.15932 6.32555 6.50428 6.77205 6.94859 7.39133 7.62296 7.72257 7.95172 8.38455 9.01203 9.58979 11.07992 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.087030 B = 0.006737 C = 0.006569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 321.652739 B = 4155.241674 C = 4261.288334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.516 4.516 8 H 0.057 0.943 9 C 0.030 3.970 10 C -0.096 4.096 11 C -0.003 4.003 12 N -0.469 5.469 13 C -0.028 4.028 14 C 0.040 3.960 15 O -0.376 6.376 16 C 0.044 3.956 17 C 0.008 3.992 18 H 0.260 0.740 19 H 0.021 0.979 20 H 0.017 0.983 21 H 0.089 0.911 22 H 0.076 0.924 23 H 0.065 0.935 24 H 0.089 0.911 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.375 -10.837 2.424 11.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.555 4.555 8 H 0.075 0.925 9 C -0.007 4.007 10 C -0.115 4.115 11 C -0.131 4.131 12 N -0.193 5.193 13 C -0.138 4.138 14 C -0.037 4.037 15 O -0.293 6.293 16 C -0.033 4.033 17 C -0.120 4.120 18 H 0.070 0.930 19 H 0.039 0.961 20 H 0.035 0.965 21 H 0.108 0.892 22 H 0.094 0.906 23 H 0.084 0.916 24 H 0.107 0.893 25 H 0.104 0.896 26 H 0.101 0.899 27 H 0.101 0.899 28 H 0.105 0.895 29 H 0.086 0.914 30 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.758 -11.383 2.406 12.226 hybrid contribution -0.374 1.424 0.332 1.509 sum 3.385 -9.959 2.737 10.868 Atomic orbital electron populations 1.69968 1.06080 1.26542 1.51036 1.25030 0.94831 0.99303 0.95348 0.86545 0.80162 0.83802 0.77568 1.19692 1.21018 1.21068 1.21260 0.93100 0.90830 1.50272 0.92502 1.19081 0.93306 0.91005 0.97335 1.22858 0.99790 0.93795 0.95064 1.23896 0.95267 0.97183 0.96787 1.69091 1.33910 1.07102 1.09191 1.25111 0.97332 0.95091 0.96281 1.23697 1.00744 0.89794 0.89490 1.89829 1.53020 1.46513 1.39985 1.23669 0.93860 0.84797 1.00962 1.23891 1.01813 0.87695 0.98615 0.93043 0.96075 0.96505 0.89244 0.90582 0.91643 0.89303 0.89627 0.89875 0.89935 0.89486 0.91440 0.90434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.52 13.29 55.43 0.74 -25.79 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.52 -14.19 9.09 -34.44 -0.31 -14.50 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.03 0.74 4.89 -27.89 -0.14 0.61 16 10 C -0.10 -1.90 3.92 -90.09 -0.35 -2.26 16 11 C 0.00 -0.05 6.99 -7.54 -0.05 -0.10 16 12 N -0.47 -7.39 6.43 -237.77 -1.53 -8.92 16 13 C -0.03 -0.39 3.47 -67.33 -0.23 -0.63 16 14 C 0.04 0.51 8.21 24.60 0.20 0.71 16 15 O -0.38 -5.40 12.74 -35.23 -0.45 -5.85 16 16 C 0.04 0.57 8.57 24.59 0.21 0.78 16 17 C 0.01 0.15 7.29 -7.54 -0.05 0.09 16 18 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 19 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 20 H 0.02 0.44 7.82 -51.92 -0.41 0.03 16 21 H 0.09 1.80 8.12 -51.93 -0.42 1.38 16 22 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 23 H 0.07 1.08 7.87 -51.93 -0.41 0.67 16 24 H 0.09 1.27 7.65 -51.93 -0.40 0.87 16 25 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 27 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 28 H 0.09 1.07 8.14 -51.92 -0.42 0.65 16 29 H 0.07 1.21 7.35 -51.93 -0.38 0.83 16 30 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 253.06 15.07 3.81 3.81 Total: -1.00 -29.21 253.06 -7.79 -37.00 By element: Atomic # 1 Polarization: 1.76 SS G_CDS: -4.52 Total: -2.76 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: -0.83 Total: -13.83 kcal Atomic # 7 Polarization: -33.91 SS G_CDS: -0.79 Total: -34.70 kcal Atomic # 8 Polarization: -5.40 SS G_CDS: -0.45 Total: -5.85 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -29.21 -7.79 -37.00 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260446096.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.554 kcal (2) G-P(sol) polarization free energy of solvation -29.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds