Wall clock time and date at job start Mon Mar 30 2020 02:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99968 * 2 1 4 4 H 1.48497 * 109.46875 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47016 * 300.00164 * 3 2 1 6 6 H 1.48504 * 109.46810 * 59.99718 * 3 2 1 7 7 C 1.37877 * 119.99852 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99535 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00186 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47570 * 180.02562 * 9 7 2 11 11 C 1.53511 * 114.17498 * 184.99832 * 10 9 7 12 12 N 1.47480 * 87.93237 * 220.13683 * 11 10 9 13 13 C 1.46899 * 110.99826 * 138.69966 * 12 11 10 14 14 C 1.53376 * 114.56246 * 69.45053 * 13 12 11 15 15 O 1.43352 * 88.44647 * 139.57815 * 14 13 12 16 16 C 1.43352 * 88.31944 * 331.84943 * 15 14 13 17 17 C 1.47483 * 87.83772 * 27.01012 * 12 11 10 18 18 H 0.96999 * 120.00264 * 0.02562 * 1 2 3 19 19 H 1.09001 * 109.47721 * 59.99727 * 9 7 2 20 20 H 1.09008 * 109.47455 * 299.99911 * 9 7 2 21 21 H 1.09004 * 113.25138 * 317.95111 * 10 9 7 22 22 H 1.08995 * 113.47437 * 105.36967 * 11 10 9 23 23 H 1.09000 * 113.52997 * 334.91584 * 11 10 9 24 24 H 1.08994 * 113.57117 * 295.17495 * 13 12 11 25 25 H 1.08991 * 113.39048 * 24.67933 * 14 13 12 26 26 H 1.08998 * 113.38659 * 254.47083 * 14 13 12 27 27 H 1.09001 * 113.39396 * 143.05961 * 16 15 14 28 28 H 1.09007 * 113.38957 * 273.25265 * 16 15 14 29 29 H 1.09002 * 113.47482 * 87.75178 * 17 12 11 30 30 H 1.08993 * 113.47881 * 218.22270 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 6 1.5933 -5.0465 -0.1246 12 7 2.5696 -5.5354 0.8668 13 6 1.9317 -6.4415 1.8312 14 6 1.5017 -7.7932 1.2478 15 8 1.9622 -8.4161 2.4540 16 6 2.9053 -7.3460 2.5966 17 6 2.6355 -4.1607 1.3970 18 1 -0.4850 0.8400 -0.0004 19 1 0.6247 -2.5563 -0.8919 20 1 0.6240 -2.5575 0.8881 21 1 3.0907 -3.5057 -0.6715 22 1 1.7128 -5.4965 -1.1101 23 1 0.5630 -5.0753 0.2298 24 1 1.1795 -5.9565 2.4532 25 1 2.0713 -8.0846 0.3655 26 1 0.4250 -7.8782 1.1009 27 1 3.0587 -7.0393 3.6313 28 1 3.8416 -7.5207 2.0663 29 1 1.8833 -3.9523 2.1579 30 1 3.6381 -3.8602 1.7011 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260446096.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:22 Heat of formation + Delta-G solvation = -1.760103 kcal Electronic energy + Delta-G solvation = -12414.960889 eV Core-core repulsion = 10211.702075 eV Total energy + Delta-G solvation = -2203.258814 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.08644 -40.14095 -35.24417 -32.63362 -30.09930 -27.59943 -26.84041 -26.30732 -24.05421 -21.22103 -20.34790 -18.47746 -17.63569 -17.34900 -16.82024 -16.55103 -16.21675 -15.08265 -14.64616 -14.18883 -13.90207 -13.61861 -13.48949 -13.16937 -12.86157 -12.65396 -12.40541 -11.82514 -11.60525 -11.37849 -11.11944 -10.91995 -10.79597 -10.52659 -9.90363 -8.18335 -6.28199 1.41152 1.42226 1.54916 2.42532 2.90235 3.02283 3.09336 3.15509 3.83535 3.93434 3.95705 4.24414 4.38902 4.42530 4.53133 4.59044 4.73770 4.79698 4.90949 4.97325 5.02204 5.04558 5.16640 5.23496 5.51964 5.71110 5.85485 6.07977 6.28066 6.88392 7.40988 8.93393 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.087030 B = 0.006737 C = 0.006569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 321.652739 B = 4155.241674 C = 4261.288334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.001 4.001 3 Si 0.961 3.039 4 H -0.262 1.262 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.533 4.533 8 H 0.060 0.940 9 C 0.037 3.963 10 C -0.104 4.104 11 C 0.008 3.992 12 N -0.458 5.458 13 C -0.037 4.037 14 C 0.045 3.955 15 O -0.392 6.392 16 C 0.049 3.951 17 C 0.014 3.986 18 H 0.262 0.738 19 H -0.005 1.005 20 H -0.006 1.006 21 H 0.087 0.913 22 H 0.093 0.907 23 H 0.064 0.936 24 H 0.085 0.915 25 H 0.095 0.905 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.061 0.939 30 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.505 -11.330 2.576 12.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.198 4.198 3 Si 0.786 3.214 4 H -0.186 1.186 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.571 4.571 8 H 0.078 0.922 9 C 0.000 4.000 10 C -0.123 4.123 11 C -0.120 4.120 12 N -0.182 5.182 13 C -0.147 4.147 14 C -0.032 4.032 15 O -0.310 6.310 16 C -0.028 4.028 17 C -0.114 4.114 18 H 0.071 0.929 19 H 0.013 0.987 20 H 0.012 0.988 21 H 0.105 0.895 22 H 0.112 0.888 23 H 0.083 0.917 24 H 0.103 0.897 25 H 0.113 0.887 26 H 0.114 0.886 27 H 0.114 0.886 28 H 0.113 0.887 29 H 0.079 0.921 30 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.901 -11.893 2.558 13.115 hybrid contribution -0.750 1.547 0.285 1.743 sum 4.151 -10.346 2.843 11.504 Atomic orbital electron populations 1.70093 1.07757 1.27607 1.52132 1.25939 0.95691 1.03226 0.94960 0.85449 0.79194 0.79083 0.77643 1.18560 1.20550 1.20592 1.21689 0.93516 0.92150 1.49751 0.92158 1.18919 0.93669 0.92552 0.94885 1.22688 0.98961 0.93600 0.97035 1.23788 0.95215 0.94969 0.98078 1.69064 1.33763 1.06159 1.09178 1.25173 0.97972 0.95145 0.96392 1.23768 1.01738 0.88384 0.89326 1.89828 1.53543 1.46993 1.40652 1.23734 0.93604 0.83711 1.01734 1.23773 1.01879 0.88759 0.97013 0.92874 0.98678 0.98799 0.89473 0.88826 0.91720 0.89708 0.88697 0.88650 0.88637 0.88678 0.92108 0.89771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.18 13.29 21.45 0.28 -55.89 16 2 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 3 Si 0.96 43.70 29.54 68.60 2.03 45.73 16 4 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 7 C -0.53 -29.53 9.09 25.60 0.23 -29.30 16 8 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 9 C 0.04 1.89 4.89 29.85 0.15 2.03 16 10 C -0.10 -4.08 3.92 -10.45 -0.04 -4.12 16 11 C 0.01 0.25 6.99 83.58 0.58 0.84 16 12 N -0.46 -13.55 6.43 -908.18 -5.84 -19.39 16 13 C -0.04 -0.96 3.47 45.16 0.16 -0.80 16 14 C 0.04 1.03 8.21 63.85 0.52 1.56 16 15 O -0.39 -10.38 12.74 -148.98 -1.90 -12.28 16 16 C 0.05 1.14 8.57 63.84 0.55 1.68 16 17 C 0.01 0.49 7.29 83.58 0.61 1.10 16 18 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 19 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 20 H -0.01 -0.35 7.82 -2.38 -0.02 -0.37 16 21 H 0.09 3.46 8.12 -2.38 -0.02 3.44 16 22 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 23 H 0.06 2.08 7.87 -2.39 -0.02 2.06 16 24 H 0.09 2.30 7.65 -2.39 -0.02 2.28 16 25 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 26 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.10 2.07 8.14 -2.38 -0.02 2.05 16 29 H 0.06 2.16 7.35 -2.39 -0.02 2.14 16 30 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 Total: -1.00 -61.57 253.06 -1.10 -62.67 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: 1.10 Total: 5.74 kcal Atomic # 6 Polarization: -29.81 SS G_CDS: 3.22 Total: -26.58 kcal Atomic # 7 Polarization: -69.73 SS G_CDS: -5.55 Total: -75.28 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: -1.90 Total: -12.28 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -61.57 -1.10 -62.67 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260446096.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.915 kcal (2) G-P(sol) polarization free energy of solvation -61.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds