Wall clock time and date at job start Mon Mar 30 2020 02:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 119.99935 * 2 1 4 4 H 1.48500 * 109.47486 * 270.00034 * 3 2 1 5 5 H 1.48507 * 109.47318 * 30.00320 * 3 2 1 6 6 H 1.48503 * 109.47155 * 149.99844 * 3 2 1 7 7 C 1.37874 * 120.00388 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00327 * 179.97438 * 7 2 1 9 9 C 1.50711 * 119.99484 * 0.27851 * 7 2 1 10 10 H 1.09001 * 110.28506 * 299.04673 * 9 7 2 11 11 C 1.54258 * 110.32477 * 61.17724 * 9 7 2 12 12 C 1.54379 * 105.05810 * 118.89798 * 11 9 7 13 13 N 1.48558 * 104.59657 * 23.84819 * 12 11 9 14 14 C 1.46900 * 110.99915 * 200.95806 * 13 12 11 15 15 C 1.54031 * 113.82108 * 283.95272 * 14 13 12 16 16 O 1.44446 * 85.42848 * 223.23763 * 15 14 13 17 17 C 1.44179 * 93.37781 * 24.09202 * 16 15 14 18 18 C 1.48560 * 104.22300 * 320.51836 * 13 12 11 19 19 H 0.97003 * 120.00068 * 359.97438 * 1 2 3 20 20 H 1.08997 * 110.31832 * 237.78794 * 11 9 7 21 21 H 1.08997 * 110.32527 * 359.97438 * 11 9 7 22 22 H 1.08999 * 110.41049 * 142.63411 * 12 11 9 23 23 H 1.09006 * 110.40850 * 264.95186 * 12 11 9 24 24 H 1.09001 * 112.99716 * 55.78224 * 14 13 12 25 25 H 1.09003 * 113.86106 * 337.34771 * 15 14 13 26 26 H 1.08995 * 113.86687 * 109.04433 * 15 14 13 27 27 H 1.09010 * 113.86061 * 221.77407 * 17 16 15 28 28 H 1.08994 * 113.87264 * 90.06425 * 17 16 15 29 29 H 1.08993 * 110.41301 * 280.70331 * 18 13 12 30 30 H 1.09008 * 110.41105 * 158.26048 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0075 10 1 0.6284 -2.5808 0.8835 11 6 0.3845 -2.6108 -1.2788 12 6 0.9178 -3.8558 -2.0196 13 7 1.5551 -4.6781 -0.9591 14 6 2.5215 -5.6227 -1.5349 15 6 1.8703 -6.8395 -2.2190 16 8 2.8950 -7.6138 -1.5582 17 6 3.0848 -6.6335 -0.5181 18 6 2.2351 -3.6859 -0.0871 19 1 -0.4850 0.8401 0.0004 20 1 -0.6632 -2.7491 -1.0118 21 1 0.5038 -1.7215 -1.8976 22 1 0.0970 -4.4029 -2.4833 23 1 1.6523 -3.5654 -2.7709 24 1 3.2857 -5.1345 -2.1397 25 1 0.8606 -7.0541 -1.8688 26 1 1.9537 -6.8314 -3.3057 27 1 4.1296 -6.4624 -0.2587 28 1 2.4469 -6.7851 0.3526 29 1 3.1772 -3.3692 -0.5345 30 1 2.4060 -4.1053 0.9044 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260446962.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:28 Heat of formation + Delta-G solvation = -10.774864 kcal Electronic energy + Delta-G solvation = -12765.917277 eV Core-core repulsion = 10562.267554 eV Total energy + Delta-G solvation = -2203.649723 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.16523 -37.36846 -33.06478 -30.58884 -28.32851 -27.07145 -26.22687 -24.21571 -20.95719 -19.72056 -19.33328 -16.63558 -16.27890 -15.72407 -15.38084 -14.65565 -14.52881 -13.25747 -13.05681 -12.55259 -12.33375 -11.97809 -11.59424 -11.09258 -11.05042 -10.61883 -10.46468 -10.44924 -10.12844 -9.77053 -9.53259 -9.30056 -8.77150 -8.41159 -7.95644 -6.04736 -4.08993 3.27511 3.34797 3.37577 3.88364 4.37666 4.45989 4.58357 5.25581 5.28227 5.42114 5.57373 5.60478 5.71655 5.99840 6.10640 6.19028 6.21783 6.25647 6.35099 6.48968 6.81328 7.04269 7.14315 7.46686 7.63012 7.65471 7.85223 7.96368 8.42207 8.93950 9.55316 11.04378 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.073997 B = 0.008405 C = 0.007987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 378.302736 B = 3330.364621 C = 3504.841283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.518 4.518 8 H 0.054 0.946 9 C 0.048 3.952 10 H 0.034 0.966 11 C -0.092 4.092 12 C 0.031 3.969 13 N -0.508 5.508 14 C 0.000 4.000 15 C 0.047 3.953 16 O -0.390 6.390 17 C 0.048 3.952 18 C 0.040 3.960 19 H 0.260 0.740 20 H 0.046 0.954 21 H 0.067 0.933 22 H 0.062 0.938 23 H 0.032 0.968 24 H 0.071 0.929 25 H 0.088 0.912 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.089 0.911 29 H 0.036 0.964 30 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.947 -8.342 -3.129 9.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.208 1.208 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.556 4.556 8 H 0.073 0.927 9 C 0.029 3.971 10 H 0.052 0.948 11 C -0.130 4.130 12 C -0.097 4.097 13 N -0.234 5.234 14 C -0.110 4.110 15 C -0.030 4.030 16 O -0.308 6.308 17 C -0.029 4.029 18 C -0.087 4.087 19 H 0.070 0.930 20 H 0.065 0.935 21 H 0.086 0.914 22 H 0.080 0.920 23 H 0.050 0.950 24 H 0.089 0.911 25 H 0.106 0.894 26 H 0.102 0.898 27 H 0.104 0.896 28 H 0.107 0.893 29 H 0.054 0.946 30 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.534 -8.815 -2.890 9.617 hybrid contribution 1.006 1.644 -0.508 1.993 sum 3.539 -7.171 -3.398 8.689 Atomic orbital electron populations 1.69983 1.05844 1.26545 1.50076 1.24966 0.94849 0.99017 0.95109 0.86635 0.79922 0.83618 0.78066 1.20754 1.21179 1.19932 1.21197 0.92705 0.90449 1.51254 0.92730 1.19380 0.92277 0.90968 0.94490 0.94797 1.22204 0.98596 0.93932 0.98300 1.23178 0.97530 0.95442 0.93538 1.65729 1.25794 1.15619 1.16253 1.25105 0.95034 0.94715 0.96151 1.24037 0.93048 0.87938 0.97940 1.89650 1.55807 1.44079 1.41283 1.23986 1.01247 0.85386 0.92280 1.23281 0.97238 0.92742 0.95467 0.92984 0.93529 0.91413 0.91975 0.94958 0.91107 0.89374 0.89751 0.89637 0.89344 0.94600 0.92050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.17 12.34 55.43 0.68 -24.48 16 2 C 0.06 1.71 5.08 -17.82 -0.09 1.62 16 3 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.52 -13.99 8.38 -34.44 -0.29 -14.28 16 8 H 0.05 1.46 7.58 -52.49 -0.40 1.06 16 9 C 0.05 1.18 2.99 -90.39 -0.27 0.91 16 10 H 0.03 0.92 8.14 -51.93 -0.42 0.49 16 11 C -0.09 -2.13 5.75 -25.35 -0.15 -2.27 16 12 C 0.03 0.59 6.33 -2.18 -0.01 0.57 16 13 N -0.51 -9.43 5.32 -229.89 -1.22 -10.65 16 14 C 0.00 0.00 3.11 -66.63 -0.21 -0.21 16 15 C 0.05 0.67 8.85 37.64 0.33 1.00 16 16 O -0.39 -6.07 12.46 -35.23 -0.44 -6.51 16 17 C 0.05 0.69 8.73 37.64 0.33 1.02 16 18 C 0.04 0.82 5.77 -2.18 -0.01 0.81 16 19 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 20 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 21 H 0.07 1.72 7.22 -51.93 -0.38 1.34 16 22 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 23 H 0.03 0.61 7.99 -51.93 -0.41 0.19 16 24 H 0.07 1.13 8.12 -51.93 -0.42 0.71 16 25 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 26 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.09 1.10 8.14 -51.92 -0.42 0.68 16 28 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 29 H 0.04 0.75 7.56 -51.93 -0.39 0.36 16 30 H 0.06 1.21 8.14 -51.92 -0.42 0.78 16 LS Contribution 247.87 15.07 3.74 3.74 Total: -1.00 -28.22 247.87 -7.15 -35.37 By element: Atomic # 1 Polarization: 1.89 SS G_CDS: -4.52 Total: -2.63 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: -0.37 Total: -10.82 kcal Atomic # 7 Polarization: -34.60 SS G_CDS: -0.54 Total: -35.14 kcal Atomic # 8 Polarization: -6.07 SS G_CDS: -0.44 Total: -6.51 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -28.22 -7.15 -35.37 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260446962.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.598 kcal (2) G-P(sol) polarization free energy of solvation -28.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds