Wall clock time and date at job start Mon Mar 30 2020 02:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 119.99935 * 2 1 4 4 H 1.48500 * 109.47486 * 270.00034 * 3 2 1 5 5 H 1.48507 * 109.47318 * 30.00320 * 3 2 1 6 6 H 1.48503 * 109.47155 * 149.99844 * 3 2 1 7 7 C 1.37874 * 120.00388 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00327 * 179.97438 * 7 2 1 9 9 C 1.50711 * 119.99484 * 0.27851 * 7 2 1 10 10 H 1.09001 * 110.28506 * 299.04673 * 9 7 2 11 11 C 1.54258 * 110.32477 * 61.17724 * 9 7 2 12 12 C 1.54379 * 105.05810 * 118.89798 * 11 9 7 13 13 N 1.48558 * 104.59657 * 23.84819 * 12 11 9 14 14 C 1.46900 * 110.99915 * 200.95806 * 13 12 11 15 15 C 1.54031 * 113.82108 * 283.95272 * 14 13 12 16 16 O 1.44446 * 85.42848 * 223.23763 * 15 14 13 17 17 C 1.44179 * 93.37781 * 24.09202 * 16 15 14 18 18 C 1.48560 * 104.22300 * 320.51836 * 13 12 11 19 19 H 0.97003 * 120.00068 * 359.97438 * 1 2 3 20 20 H 1.08997 * 110.31832 * 237.78794 * 11 9 7 21 21 H 1.08997 * 110.32527 * 359.97438 * 11 9 7 22 22 H 1.08999 * 110.41049 * 142.63411 * 12 11 9 23 23 H 1.09006 * 110.40850 * 264.95186 * 12 11 9 24 24 H 1.09001 * 112.99716 * 55.78224 * 14 13 12 25 25 H 1.09003 * 113.86106 * 337.34771 * 15 14 13 26 26 H 1.08995 * 113.86687 * 109.04433 * 15 14 13 27 27 H 1.09010 * 113.86061 * 221.77407 * 17 16 15 28 28 H 1.08994 * 113.87264 * 90.06425 * 17 16 15 29 29 H 1.08993 * 110.41301 * 280.70331 * 18 13 12 30 30 H 1.09008 * 110.41105 * 158.26048 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0075 10 1 0.6284 -2.5808 0.8835 11 6 0.3845 -2.6108 -1.2788 12 6 0.9178 -3.8558 -2.0196 13 7 1.5551 -4.6781 -0.9591 14 6 2.5215 -5.6227 -1.5349 15 6 1.8703 -6.8395 -2.2190 16 8 2.8950 -7.6138 -1.5582 17 6 3.0848 -6.6335 -0.5181 18 6 2.2351 -3.6859 -0.0871 19 1 -0.4850 0.8401 0.0004 20 1 -0.6632 -2.7491 -1.0118 21 1 0.5038 -1.7215 -1.8976 22 1 0.0970 -4.4029 -2.4833 23 1 1.6523 -3.5654 -2.7709 24 1 3.2857 -5.1345 -2.1397 25 1 0.8606 -7.0541 -1.8688 26 1 1.9537 -6.8314 -3.3057 27 1 4.1296 -6.4624 -0.2587 28 1 2.4469 -6.7851 0.3526 29 1 3.1772 -3.3692 -0.5345 30 1 2.4060 -4.1053 0.9044 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260446962.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:28 Heat of formation + Delta-G solvation = -30.725278 kcal Electronic energy + Delta-G solvation = -12766.782392 eV Core-core repulsion = 10562.267554 eV Total energy + Delta-G solvation = -2204.514838 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.38766 -38.98336 -35.00193 -32.28603 -30.04103 -28.53558 -27.40171 -26.13190 -22.50642 -21.23917 -20.99224 -18.45166 -17.52752 -17.27205 -16.61784 -16.44792 -16.23679 -14.81481 -14.68230 -14.04001 -13.78081 -13.58872 -13.12304 -12.94564 -12.82682 -12.52726 -12.20626 -11.82454 -11.64091 -11.59278 -11.14871 -10.79338 -10.68095 -10.48753 -9.45341 -8.14154 -6.25189 1.40491 1.41690 1.51553 2.41561 2.75720 3.12901 3.16695 3.25684 4.07462 4.08420 4.26270 4.40346 4.48832 4.53343 4.60387 4.62120 4.83783 4.93987 5.02470 5.07546 5.14427 5.24205 5.32593 5.61078 5.69545 5.87371 5.94112 6.18931 6.39065 6.85869 7.42761 8.94733 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.073997 B = 0.008405 C = 0.007987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 378.302736 B = 3330.364621 C = 3504.841283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.013 3.987 3 Si 0.954 3.046 4 H -0.276 1.276 5 H -0.284 1.284 6 H -0.268 1.268 7 C -0.534 4.534 8 H 0.054 0.946 9 C 0.037 3.963 10 H -0.001 1.001 11 C -0.085 4.085 12 C 0.042 3.958 13 N -0.507 5.507 14 C -0.009 4.009 15 C 0.055 3.945 16 O -0.403 6.403 17 C 0.051 3.949 18 C 0.053 3.947 19 H 0.261 0.739 20 H 0.031 0.969 21 H 0.039 0.961 22 H 0.087 0.913 23 H 0.038 0.962 24 H 0.073 0.927 25 H 0.092 0.908 26 H 0.106 0.894 27 H 0.102 0.898 28 H 0.090 0.910 29 H 0.034 0.966 30 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.945 -9.067 -3.801 10.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.186 4.186 3 Si 0.779 3.221 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.572 4.572 8 H 0.072 0.928 9 C 0.018 3.982 10 H 0.018 0.982 11 C -0.124 4.124 12 C -0.086 4.086 13 N -0.233 5.233 14 C -0.118 4.118 15 C -0.022 4.022 16 O -0.322 6.322 17 C -0.025 4.025 18 C -0.075 4.075 19 H 0.070 0.930 20 H 0.050 0.950 21 H 0.058 0.942 22 H 0.105 0.895 23 H 0.057 0.943 24 H 0.091 0.909 25 H 0.110 0.890 26 H 0.124 0.876 27 H 0.120 0.880 28 H 0.108 0.892 29 H 0.052 0.948 30 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.541 -9.558 -3.566 10.798 hybrid contribution 0.674 1.845 -0.281 1.984 sum 4.215 -7.713 -3.847 9.595 Atomic orbital electron populations 1.70105 1.07250 1.27316 1.50908 1.25746 0.95650 1.02417 0.94792 0.85622 0.78775 0.79429 0.78233 1.20138 1.20951 1.19208 1.21535 0.92884 0.91754 1.51052 0.92783 1.19366 0.92962 0.92165 0.93692 0.98248 1.21990 0.97713 0.94996 0.97717 1.23061 0.98413 0.93865 0.93254 1.65718 1.26541 1.14952 1.16093 1.25276 0.94926 0.94428 0.97182 1.24139 0.92887 0.86055 0.99118 1.89648 1.56286 1.44535 1.41699 1.24064 1.02274 0.84269 0.91912 1.23026 0.95950 0.91840 0.96667 0.93000 0.94993 0.94210 0.89464 0.94320 0.90909 0.88954 0.87554 0.88011 0.89203 0.94810 0.91098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.10 12.34 21.45 0.26 -52.84 16 2 C 0.01 0.72 5.08 84.65 0.43 1.15 16 3 Si 0.95 43.19 29.54 68.60 2.03 45.22 16 4 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 6 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.53 -29.16 8.38 25.60 0.21 -28.94 16 8 H 0.05 2.88 7.58 -2.91 -0.02 2.86 16 9 C 0.04 1.87 2.99 -10.64 -0.03 1.84 16 10 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 11 C -0.09 -4.01 5.75 31.49 0.18 -3.83 16 12 C 0.04 1.53 6.33 86.45 0.55 2.08 16 13 N -0.51 -17.91 5.32 -892.27 -4.74 -22.65 16 14 C -0.01 -0.25 3.11 45.62 0.14 -0.11 16 15 C 0.05 1.36 8.85 72.29 0.64 2.00 16 16 O -0.40 -11.39 12.46 -148.98 -1.86 -13.25 16 17 C 0.05 1.35 8.73 72.30 0.63 1.98 16 18 C 0.05 2.14 5.77 86.45 0.50 2.64 16 19 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 20 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 21 H 0.04 2.05 7.22 -2.39 -0.02 2.04 16 22 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 23 H 0.04 1.38 7.99 -2.38 -0.02 1.36 16 24 H 0.07 2.11 8.12 -2.39 -0.02 2.09 16 25 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 26 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 27 H 0.10 2.32 8.14 -2.38 -0.02 2.31 16 28 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.03 1.38 7.56 -2.39 -0.02 1.36 16 30 H 0.07 2.72 8.14 -2.38 -0.02 2.70 16 Total: -1.00 -59.94 247.87 0.04 -59.90 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: 1.10 Total: 4.81 kcal Atomic # 6 Polarization: -24.45 SS G_CDS: 3.25 Total: -21.20 kcal Atomic # 7 Polarization: -71.01 SS G_CDS: -4.48 Total: -75.48 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: -1.86 Total: -13.25 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -59.94 0.04 -59.90 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260446962.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.176 kcal (2) G-P(sol) polarization free energy of solvation -59.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds