Wall clock time and date at job start Mon Mar 30 2020 02:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47378 * 2 1 4 4 C 1.53004 * 109.46962 * 119.99773 * 2 1 3 5 5 C 1.50692 * 109.47104 * 64.99997 * 4 2 1 6 6 N 1.28635 * 122.94274 * 0.02731 * 5 4 2 7 7 C 1.47599 * 108.55212 * 180.41176 * 6 5 4 8 8 H 1.09003 * 110.97178 * 256.78855 * 7 6 5 9 9 C 1.50694 * 110.94881 * 133.09969 * 7 6 5 10 10 H 1.08000 * 120.00563 * 247.48961 * 9 7 6 11 11 C 1.37885 * 119.99902 * 67.49124 * 9 7 6 12 12 N 1.31516 * 119.99913 * 359.97438 * 11 9 7 13 13 Si 1.86798 * 119.99766 * 179.97438 * 11 9 7 14 14 H 1.48506 * 109.46985 * 179.97438 * 13 11 9 15 15 H 1.48494 * 109.47276 * 299.99832 * 13 11 9 16 16 H 1.48498 * 109.47150 * 60.00043 * 13 11 9 17 17 C 1.54854 * 101.89375 * 14.94765 * 7 6 5 18 18 O 1.34605 * 122.93905 * 180.02562 * 5 4 2 19 19 H 1.08996 * 109.47444 * 300.00402 * 1 2 3 20 20 H 1.09002 * 109.47157 * 60.00515 * 1 2 3 21 21 H 1.09002 * 109.47312 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47444 * 239.99598 * 2 1 3 23 23 H 1.08994 * 109.47481 * 180.02562 * 3 2 1 24 24 H 1.09002 * 109.46556 * 299.99853 * 3 2 1 25 25 H 1.08996 * 109.47161 * 59.99425 * 3 2 1 26 26 H 1.09000 * 109.46776 * 304.99887 * 4 2 1 27 27 H 1.09001 * 109.46958 * 185.00524 * 4 2 1 28 28 H 0.97001 * 119.99646 * 179.97438 * 12 11 9 29 29 H 1.09003 * 111.07516 * 94.74388 * 17 7 6 30 30 H 1.09002 * 111.07351 * 218.73884 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6412 -2.1732 1.1890 6 7 0.9740 -2.6753 0.2106 7 6 0.7510 -4.1091 0.4810 8 1 1.4236 -4.7275 -0.1134 9 6 -0.6862 -4.4873 0.2314 10 1 -1.3199 -4.7761 1.0568 11 6 -1.1921 -4.4648 -1.0511 12 7 -0.4206 -4.1128 -2.0563 13 14 -2.9735 -4.9344 -1.3606 14 1 -3.2681 -4.8286 -2.8123 15 1 -3.2032 -6.3301 -0.9088 16 1 -3.8653 -4.0170 -0.6069 17 6 1.0955 -4.2070 1.9876 18 8 1.9522 -3.0583 2.1543 19 1 -0.3634 0.5139 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 1.8933 -0.5139 -0.8899 23 1 3.1300 1.4425 -0.0005 24 1 1.6767 1.9562 -0.8900 25 1 1.6766 1.9563 0.8899 26 1 1.6053 -0.2616 2.1370 27 1 3.1262 -0.6442 1.2953 28 1 -0.7765 -4.0973 -2.9585 29 1 0.1988 -4.1197 2.6012 30 1 1.6302 -5.1309 2.2082 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260532654.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:21 Heat of formation + Delta-G solvation = -26.886944 kcal Electronic energy + Delta-G solvation = -12839.916637 eV Core-core repulsion = 10635.568241 eV Total energy + Delta-G solvation = -2204.348396 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.89694 -35.90336 -33.33636 -31.52178 -29.76629 -26.66108 -26.47424 -24.80664 -20.99152 -20.35677 -18.56936 -16.66665 -15.91011 -14.89981 -14.57973 -14.33426 -14.03677 -13.41022 -12.55767 -12.20243 -12.13803 -11.84152 -11.71118 -11.35046 -10.88869 -10.77679 -10.62628 -10.41999 -10.19329 -10.12771 -9.90858 -9.48059 -8.70363 -8.47398 -7.69367 -6.02289 -4.14771 3.29634 3.34922 3.35736 3.44154 4.26040 4.41696 5.13119 5.35028 5.42899 5.51963 5.73368 5.91773 6.03612 6.06788 6.11503 6.13812 6.23535 6.32129 6.42080 6.49980 6.66179 6.91243 6.96195 7.25727 7.36834 7.68166 7.83323 8.20777 8.77882 9.18200 9.53080 11.05149 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.035191 B = 0.012216 C = 0.009878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.462652 B = 2291.528709 C = 2833.825638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.080 4.080 3 C -0.145 4.145 4 C -0.029 4.029 5 C 0.217 3.783 6 N -0.458 5.458 7 C 0.157 3.843 8 H 0.059 0.941 9 C -0.528 4.528 10 H 0.060 0.940 11 C 0.081 3.919 12 N -0.857 5.857 13 Si 0.892 3.108 14 H -0.286 1.286 15 H -0.276 1.276 16 H -0.276 1.276 17 C 0.022 3.978 18 O -0.374 6.374 19 H 0.036 0.964 20 H 0.042 0.958 21 H 0.094 0.906 22 H 0.081 0.919 23 H 0.050 0.950 24 H 0.053 0.947 25 H 0.050 0.950 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.261 0.739 29 H 0.067 0.933 30 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.215 6.486 4.486 8.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.098 4.098 3 C -0.203 4.203 4 C -0.067 4.067 5 C -0.012 4.012 6 N -0.190 5.190 7 C 0.050 3.950 8 H 0.077 0.923 9 C -0.566 4.566 10 H 0.078 0.922 11 C -0.125 4.125 12 N -0.492 5.492 13 Si 0.719 3.281 14 H -0.211 1.211 15 H -0.202 1.202 16 H -0.201 1.201 17 C -0.055 4.055 18 O -0.280 6.280 19 H 0.055 0.945 20 H 0.062 0.938 21 H 0.112 0.888 22 H 0.100 0.900 23 H 0.069 0.931 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.979 6.650 3.615 8.134 hybrid contribution -0.841 -0.789 0.402 1.221 sum 2.138 5.862 4.016 7.420 Atomic orbital electron populations 1.21967 0.94569 1.04900 0.99440 1.20849 0.97003 0.94206 0.97790 1.21865 1.00381 0.96644 1.01383 1.20127 1.00824 0.86299 0.99493 1.25430 0.95547 0.93146 0.87030 1.74989 1.11497 1.11032 1.21469 1.21201 0.98825 0.87117 0.87814 0.92347 1.20701 0.94591 1.48007 0.93339 0.92207 1.24973 0.97536 0.93937 0.96089 1.70028 1.35468 1.44431 0.99264 0.86679 0.85179 0.79000 0.77211 1.21130 1.20169 1.20144 1.24663 0.92746 0.86683 1.01410 1.86759 1.58775 1.28900 1.53548 0.94519 0.93838 0.88753 0.90011 0.93127 0.92784 0.93114 0.90515 0.90471 0.92909 0.91499 0.89709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 8.94 37.16 0.33 -2.46 16 2 C -0.08 -1.34 2.58 -90.62 -0.23 -1.57 16 3 C -0.15 -1.87 9.19 37.16 0.34 -1.53 16 4 C -0.03 -0.49 5.32 -27.88 -0.15 -0.64 16 5 C 0.22 4.78 7.37 -13.62 -0.10 4.68 16 6 N -0.46 -11.61 8.21 -51.72 -0.42 -12.04 16 7 C 0.16 4.13 3.51 -67.51 -0.24 3.90 16 8 H 0.06 1.66 8.14 -51.93 -0.42 1.24 16 9 C -0.53 -14.74 8.78 -34.44 -0.30 -15.04 16 10 H 0.06 1.62 7.61 -52.49 -0.40 1.22 16 11 C 0.08 2.29 5.45 -17.82 -0.10 2.19 16 12 N -0.86 -25.18 13.15 55.43 0.73 -24.45 16 13 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 14 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 15 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 16 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 17 C 0.02 0.49 7.73 38.13 0.29 0.78 16 18 O -0.37 -8.27 11.17 -15.59 -0.17 -8.45 16 19 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 20 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 21 H 0.09 2.16 5.87 -51.93 -0.30 1.86 16 22 H 0.08 1.56 7.99 -51.93 -0.41 1.14 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 27 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 28 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 29 H 0.07 1.45 7.78 -51.93 -0.40 1.05 16 30 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 LS Contribution 253.08 15.07 3.81 3.81 Total: -1.00 -30.15 253.08 -5.69 -35.84 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: -4.46 Total: -1.35 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: -0.15 Total: -9.70 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: 0.30 Total: -36.49 kcal Atomic # 8 Polarization: -8.27 SS G_CDS: -0.17 Total: -8.45 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -30.15 -5.69 -35.84 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260532654.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.954 kcal (2) G-P(sol) polarization free energy of solvation -30.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds