Wall clock time and date at job start Mon Mar 30 2020 02:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47378 * 2 1 4 4 C 1.53004 * 109.46962 * 119.99773 * 2 1 3 5 5 C 1.50692 * 109.47104 * 64.99997 * 4 2 1 6 6 N 1.28635 * 122.94274 * 0.02731 * 5 4 2 7 7 C 1.47599 * 108.55212 * 180.41176 * 6 5 4 8 8 H 1.09003 * 110.97178 * 256.78855 * 7 6 5 9 9 C 1.50694 * 110.94881 * 133.09969 * 7 6 5 10 10 H 1.08000 * 120.00563 * 247.48961 * 9 7 6 11 11 C 1.37885 * 119.99902 * 67.49124 * 9 7 6 12 12 N 1.31516 * 119.99913 * 359.97438 * 11 9 7 13 13 Si 1.86798 * 119.99766 * 179.97438 * 11 9 7 14 14 H 1.48506 * 109.46985 * 179.97438 * 13 11 9 15 15 H 1.48494 * 109.47276 * 299.99832 * 13 11 9 16 16 H 1.48498 * 109.47150 * 60.00043 * 13 11 9 17 17 C 1.54854 * 101.89375 * 14.94765 * 7 6 5 18 18 O 1.34605 * 122.93905 * 180.02562 * 5 4 2 19 19 H 1.08996 * 109.47444 * 300.00402 * 1 2 3 20 20 H 1.09002 * 109.47157 * 60.00515 * 1 2 3 21 21 H 1.09002 * 109.47312 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47444 * 239.99598 * 2 1 3 23 23 H 1.08994 * 109.47481 * 180.02562 * 3 2 1 24 24 H 1.09002 * 109.46556 * 299.99853 * 3 2 1 25 25 H 1.08996 * 109.47161 * 59.99425 * 3 2 1 26 26 H 1.09000 * 109.46776 * 304.99887 * 4 2 1 27 27 H 1.09001 * 109.46958 * 185.00524 * 4 2 1 28 28 H 0.97001 * 119.99646 * 179.97438 * 12 11 9 29 29 H 1.09003 * 111.07516 * 94.74388 * 17 7 6 30 30 H 1.09002 * 111.07351 * 218.73884 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6412 -2.1732 1.1890 6 7 0.9740 -2.6753 0.2106 7 6 0.7510 -4.1091 0.4810 8 1 1.4236 -4.7275 -0.1134 9 6 -0.6862 -4.4873 0.2314 10 1 -1.3199 -4.7761 1.0568 11 6 -1.1921 -4.4648 -1.0511 12 7 -0.4206 -4.1128 -2.0563 13 14 -2.9735 -4.9344 -1.3606 14 1 -3.2681 -4.8286 -2.8123 15 1 -3.2032 -6.3301 -0.9088 16 1 -3.8653 -4.0170 -0.6069 17 6 1.0955 -4.2070 1.9876 18 8 1.9522 -3.0583 2.1543 19 1 -0.3634 0.5139 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 1.8933 -0.5139 -0.8899 23 1 3.1300 1.4425 -0.0005 24 1 1.6767 1.9562 -0.8900 25 1 1.6766 1.9563 0.8899 26 1 1.6053 -0.2616 2.1370 27 1 3.1262 -0.6442 1.2953 28 1 -0.7765 -4.0973 -2.9585 29 1 0.1988 -4.1197 2.6012 30 1 1.6302 -5.1309 2.2082 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260532654.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:21 Heat of formation + Delta-G solvation = -48.278484 kcal Electronic energy + Delta-G solvation = -12840.844244 eV Core-core repulsion = 10635.568241 eV Total energy + Delta-G solvation = -2205.276002 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.69533 -37.27460 -35.36606 -33.43712 -31.50462 -28.28589 -27.75681 -26.76431 -22.95804 -21.85392 -20.12733 -18.74192 -17.64477 -16.82706 -16.35798 -15.90611 -15.67068 -14.74826 -14.29134 -13.98584 -13.79542 -13.53757 -13.05844 -12.84459 -12.66985 -12.51951 -12.30462 -12.05557 -11.80058 -11.58441 -11.44012 -11.42075 -10.71113 -10.41139 -9.58691 -8.15128 -6.34679 1.38289 1.41065 1.48216 1.68022 2.38322 2.62272 3.11407 3.74656 4.08884 4.15995 4.21100 4.31742 4.39365 4.65677 4.75247 4.82193 4.85475 4.95576 5.06664 5.14755 5.23868 5.31523 5.39502 5.61226 5.65269 5.71734 5.91650 6.17175 6.66616 7.32701 7.40211 8.92687 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.035191 B = 0.012216 C = 0.009878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.462652 B = 2291.528709 C = 2833.825638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.076 4.076 3 C -0.135 4.135 4 C -0.028 4.028 5 C 0.227 3.773 6 N -0.501 5.501 7 C 0.146 3.854 8 H 0.021 0.979 9 C -0.545 4.545 10 H 0.062 0.938 11 C 0.030 3.970 12 N -0.893 5.893 13 Si 0.960 3.040 14 H -0.283 1.283 15 H -0.264 1.264 16 H -0.272 1.272 17 C 0.030 3.970 18 O -0.372 6.372 19 H 0.057 0.943 20 H 0.044 0.956 21 H 0.045 0.955 22 H 0.048 0.952 23 H 0.067 0.933 24 H 0.057 0.943 25 H 0.069 0.931 26 H 0.104 0.896 27 H 0.106 0.894 28 H 0.260 0.740 29 H 0.073 0.927 30 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.188 7.778 5.785 10.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.095 4.095 3 C -0.193 4.193 4 C -0.066 4.066 5 C -0.002 4.002 6 N -0.234 5.234 7 C 0.038 3.962 8 H 0.039 0.961 9 C -0.583 4.583 10 H 0.080 0.920 11 C -0.173 4.173 12 N -0.529 5.529 13 Si 0.784 3.216 14 H -0.208 1.208 15 H -0.189 1.189 16 H -0.198 1.198 17 C -0.047 4.047 18 O -0.278 6.278 19 H 0.076 0.924 20 H 0.064 0.936 21 H 0.064 0.936 22 H 0.067 0.933 23 H 0.086 0.914 24 H 0.076 0.924 25 H 0.088 0.912 26 H 0.122 0.878 27 H 0.125 0.875 28 H 0.069 0.931 29 H 0.091 0.909 30 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 2.957 7.937 4.932 9.802 hybrid contribution -0.771 -1.171 0.046 1.403 sum 2.186 6.766 4.978 8.680 Atomic orbital electron populations 1.21883 0.96074 1.01999 1.00610 1.20799 0.95685 0.96627 0.96409 1.21774 1.01450 0.93478 1.02552 1.20423 1.02802 0.82798 1.00581 1.26427 0.93172 0.94949 0.85606 1.74977 1.14599 1.10296 1.23484 1.21091 0.97442 0.87747 0.89876 0.96089 1.21055 0.95624 1.47927 0.93684 0.91977 1.25811 1.01861 0.93830 0.95839 1.70177 1.37424 1.45813 0.99525 0.85607 0.79762 0.79119 0.77070 1.20831 1.18895 1.19761 1.24608 0.93495 0.87888 0.98692 1.86763 1.58706 1.28891 1.53404 0.92364 0.93641 0.93556 0.93297 0.91377 0.92423 0.91178 0.87756 0.87539 0.93087 0.90852 0.87192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.36 8.94 71.98 0.64 -4.71 16 2 C -0.08 -2.44 2.58 -10.79 -0.03 -2.46 16 3 C -0.14 -3.02 9.19 71.98 0.66 -2.36 16 4 C -0.03 -0.88 5.32 29.85 0.16 -0.72 16 5 C 0.23 9.79 7.37 88.57 0.65 10.44 16 6 N -0.50 -25.98 8.21 -432.78 -3.55 -29.53 16 7 C 0.15 7.88 3.51 44.67 0.16 8.03 16 8 H 0.02 1.27 8.14 -2.39 -0.02 1.25 16 9 C -0.54 -31.04 8.78 25.60 0.22 -30.82 16 10 H 0.06 3.39 7.61 -2.91 -0.02 3.37 16 11 C 0.03 1.71 5.45 84.66 0.46 2.17 16 12 N -0.89 -54.25 13.15 21.45 0.28 -53.97 16 13 Si 0.96 44.39 29.54 68.60 2.03 46.42 16 14 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 15 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 16 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 17 C 0.03 1.32 7.73 72.62 0.56 1.88 16 18 O -0.37 -15.94 11.17 -78.70 -0.88 -16.82 16 19 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 20 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 21 H 0.05 2.15 5.87 -2.39 -0.01 2.14 16 22 H 0.05 1.87 7.99 -2.39 -0.02 1.85 16 23 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.10 2.76 8.14 -2.39 -0.02 2.74 16 27 H 0.11 2.76 8.14 -2.39 -0.02 2.74 16 28 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 29 H 0.07 3.12 7.78 -2.39 -0.02 3.10 16 30 H 0.11 4.20 8.14 -2.39 -0.02 4.18 16 Total: -1.00 -66.85 253.08 2.47 -64.38 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: 1.10 Total: 8.08 kcal Atomic # 6 Polarization: -22.05 SS G_CDS: 3.49 Total: -18.55 kcal Atomic # 7 Polarization: -80.23 SS G_CDS: -3.27 Total: -83.50 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: -0.88 Total: -16.82 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -66.85 2.47 -64.38 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260532654.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.098 kcal (2) G-P(sol) polarization free energy of solvation -66.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds