Wall clock time and date at job start Mon Mar 30 2020 02:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50698 * 109.47184 * 179.97438 * 3 2 1 5 5 N 1.28643 * 122.93674 * 359.71673 * 4 3 2 6 6 C 1.47600 * 108.54823 * 180.25388 * 5 4 3 7 7 C 1.54857 * 101.83739 * 15.32246 * 6 5 4 8 8 H 1.09002 * 111.07143 * 94.52608 * 7 6 5 9 9 C 1.52998 * 111.07667 * 218.56627 * 7 6 5 10 10 C 1.50700 * 109.46917 * 178.26814 * 9 7 6 11 11 H 1.08001 * 119.99854 * 359.97438 * 10 9 7 12 12 C 1.37878 * 120.00100 * 179.97438 * 10 9 7 13 13 N 1.31522 * 119.99635 * 0.02562 * 12 10 9 14 14 Si 1.86793 * 120.00253 * 179.97438 * 12 10 9 15 15 H 1.48493 * 109.47112 * 90.00081 * 14 12 10 16 16 H 1.48503 * 109.47208 * 210.00267 * 14 12 10 17 17 H 1.48505 * 109.47074 * 330.00029 * 14 12 10 18 18 O 1.34594 * 122.93835 * 179.97438 * 4 3 2 19 19 H 1.09004 * 109.47261 * 59.99697 * 1 2 3 20 20 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47289 * 299.99953 * 1 2 3 22 22 H 1.09001 * 109.46832 * 240.00321 * 2 1 3 23 23 H 1.08993 * 109.47194 * 119.99842 * 2 1 3 24 24 H 1.09001 * 109.46801 * 300.00272 * 3 2 1 25 25 H 1.09001 * 109.46998 * 59.99868 * 3 2 1 26 26 H 1.08997 * 111.15336 * 257.11488 * 6 5 4 27 27 H 1.08994 * 110.82043 * 133.38738 * 6 5 4 28 28 H 1.09000 * 109.46894 * 298.26224 * 9 7 6 29 29 H 1.08989 * 109.47197 * 58.26459 * 9 7 6 30 30 H 0.97000 * 119.99876 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4426 0.0006 5 7 4.2464 0.3629 0.0064 6 6 5.6761 0.7297 0.0114 7 6 5.6189 2.2257 0.4076 8 1 5.7470 2.3515 1.4828 9 6 6.6570 3.0401 -0.3669 10 6 6.5415 4.4935 0.0144 11 1 5.8013 4.8051 0.7365 12 6 7.3806 5.4254 -0.5587 13 7 8.2817 5.0459 -1.4385 14 14 7.2369 7.2270 -0.0868 15 1 8.1230 7.5075 1.0713 16 1 7.6427 8.0739 -1.2371 17 1 5.8307 7.5318 0.2806 18 8 4.2788 2.5722 0.0003 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8899 24 1 1.6766 1.9564 -0.8900 25 1 1.6766 1.9564 0.8900 26 1 6.1176 0.6053 -0.9774 27 1 6.2222 0.1501 0.7556 28 1 7.6566 2.6793 -0.1242 29 1 6.4808 2.9299 -1.4367 30 1 8.8723 5.7014 -1.8414 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260539402.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:57 Heat of formation + Delta-G solvation = -36.611508 kcal Electronic energy + Delta-G solvation = -12306.195299 eV Core-core repulsion = 10101.425215 eV Total energy + Delta-G solvation = -2204.770084 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.49128 -35.25062 -33.31706 -32.73203 -30.93665 -28.20458 -25.75751 -23.06334 -22.16169 -20.61551 -19.22329 -16.63157 -15.95434 -15.77774 -15.15574 -14.61862 -13.79158 -13.73308 -12.60839 -12.59047 -12.42286 -12.11545 -11.84890 -11.45612 -11.18682 -11.14792 -10.94153 -10.64924 -10.61727 -10.47727 -9.97498 -9.46879 -9.05194 -8.44542 -8.43331 -6.05725 -4.07892 2.62818 3.30523 3.36619 3.41486 3.82444 4.42779 4.63366 5.07835 5.09804 5.27660 5.32259 5.39383 5.55432 5.69861 5.73231 5.78695 5.93856 5.98220 6.22631 6.28047 6.33725 6.40448 6.60893 7.04284 7.43112 7.56751 7.90424 8.25703 8.34273 8.95932 9.55824 11.05698 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.056552 B = 0.007539 C = 0.006874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.001249 B = 3713.027078 C = 4072.077418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.109 4.109 3 C -0.048 4.048 4 C 0.292 3.708 5 N -0.560 5.560 6 C -0.008 4.008 7 C 0.061 3.939 8 H 0.077 0.923 9 C 0.027 3.973 10 C -0.516 4.516 11 H 0.059 0.941 12 C 0.057 3.943 13 N -0.897 5.897 14 Si 0.896 3.104 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.273 1.273 18 O -0.328 6.328 19 H 0.054 0.946 20 H 0.055 0.945 21 H 0.053 0.947 22 H 0.070 0.930 23 H 0.069 0.931 24 H 0.092 0.908 25 H 0.091 0.909 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.039 0.961 29 H 0.027 0.973 30 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.976 -7.291 2.986 13.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.147 4.147 3 C -0.086 4.086 4 C 0.066 3.934 5 N -0.299 5.299 6 C -0.137 4.137 7 C 0.004 3.996 8 H 0.095 0.905 9 C -0.010 4.010 10 C -0.554 4.554 11 H 0.077 0.923 12 C -0.144 4.144 13 N -0.536 5.536 14 Si 0.724 3.276 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.198 1.198 18 O -0.230 6.230 19 H 0.073 0.927 20 H 0.074 0.926 21 H 0.073 0.927 22 H 0.089 0.911 23 H 0.088 0.912 24 H 0.111 0.889 25 H 0.109 0.891 26 H 0.105 0.895 27 H 0.106 0.894 28 H 0.057 0.943 29 H 0.046 0.954 30 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.882 -7.881 2.818 13.728 hybrid contribution 0.586 1.704 0.215 1.815 sum -10.296 -6.177 3.033 12.384 Atomic orbital electron populations 1.21805 0.95774 1.01679 1.01774 1.21308 0.94774 0.94886 1.03724 1.20315 0.84665 0.99331 1.04275 1.25625 0.96025 0.82859 0.88868 1.74595 1.03203 1.26706 1.25357 1.24104 0.91581 0.95152 1.02861 1.24503 0.81215 0.93875 0.99958 0.90464 1.19261 0.91541 0.94644 0.95518 1.21109 1.17770 0.91874 1.24695 0.92319 1.25008 0.95218 0.99232 0.94973 1.69955 1.20745 1.34425 1.28468 0.86517 0.78457 0.84627 0.77992 1.20614 1.21161 1.19771 1.87106 1.22954 1.32009 1.80979 0.92687 0.92590 0.92749 0.91076 0.91196 0.88945 0.89051 0.89533 0.89392 0.94275 0.95443 0.92858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.91 37.16 0.37 -0.99 16 2 C -0.11 -1.26 5.26 -26.73 -0.14 -1.40 16 3 C -0.05 -0.63 5.84 -27.88 -0.16 -0.80 16 4 C 0.29 5.35 7.68 -13.61 -0.10 5.24 16 5 N -0.56 -10.52 10.77 -56.98 -0.61 -11.13 16 6 C -0.01 -0.15 7.70 -2.46 -0.02 -0.17 16 7 C 0.06 1.35 3.69 -25.75 -0.10 1.25 16 8 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 9 C 0.03 0.71 4.71 -27.88 -0.13 0.58 16 10 C -0.52 -14.79 8.96 -34.44 -0.31 -15.10 16 11 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 12 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 13 N -0.90 -26.89 13.29 55.43 0.74 -26.15 16 14 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 17 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 18 O -0.33 -7.27 10.74 -15.56 -0.17 -7.44 16 19 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 20 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 21 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 22 H 0.07 0.89 8.13 -51.93 -0.42 0.47 16 23 H 0.07 0.86 8.12 -51.93 -0.42 0.43 16 24 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 25 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.09 1.69 7.91 -51.93 -0.41 1.28 16 27 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 28 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.03 0.77 8.14 -51.94 -0.42 0.35 16 30 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 258.36 15.07 3.89 3.89 Total: -1.00 -31.09 258.36 -6.46 -37.55 By element: Atomic # 1 Polarization: 0.90 SS G_CDS: -4.60 Total: -3.70 kcal Atomic # 6 Polarization: -9.15 SS G_CDS: -0.69 Total: -9.84 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: 0.12 Total: -37.29 kcal Atomic # 8 Polarization: -7.27 SS G_CDS: -0.17 Total: -7.44 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -31.09 -6.46 -37.55 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260539402.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.942 kcal (2) G-P(sol) polarization free energy of solvation -31.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds