Wall clock time and date at job start Mon Mar 30 2020 02:39:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.53006 * 109.47127 * 2 1
4 4 C 1.50698 * 109.47184 * 179.97438 * 3 2 1
5 5 N 1.28643 * 122.93674 * 359.71673 * 4 3 2
6 6 C 1.47600 * 108.54823 * 180.25388 * 5 4 3
7 7 C 1.54857 * 101.83739 * 15.32246 * 6 5 4
8 8 H 1.09002 * 111.07143 * 94.52608 * 7 6 5
9 9 C 1.52998 * 111.07667 * 218.56627 * 7 6 5
10 10 C 1.50700 * 109.46917 * 178.26814 * 9 7 6
11 11 H 1.08001 * 119.99854 * 359.97438 * 10 9 7
12 12 C 1.37878 * 120.00100 * 179.97438 * 10 9 7
13 13 N 1.31522 * 119.99635 * 0.02562 * 12 10 9
14 14 Si 1.86793 * 120.00253 * 179.97438 * 12 10 9
15 15 H 1.48493 * 109.47112 * 90.00081 * 14 12 10
16 16 H 1.48503 * 109.47208 * 210.00267 * 14 12 10
17 17 H 1.48505 * 109.47074 * 330.00029 * 14 12 10
18 18 O 1.34594 * 122.93835 * 179.97438 * 4 3 2
19 19 H 1.09004 * 109.47261 * 59.99697 * 1 2 3
20 20 H 1.09002 * 109.47153 * 179.97438 * 1 2 3
21 21 H 1.09001 * 109.47289 * 299.99953 * 1 2 3
22 22 H 1.09001 * 109.46832 * 240.00321 * 2 1 3
23 23 H 1.08993 * 109.47194 * 119.99842 * 2 1 3
24 24 H 1.09001 * 109.46801 * 300.00272 * 3 2 1
25 25 H 1.09001 * 109.46998 * 59.99868 * 3 2 1
26 26 H 1.08997 * 111.15336 * 257.11488 * 6 5 4
27 27 H 1.08994 * 110.82043 * 133.38738 * 6 5 4
28 28 H 1.09000 * 109.46894 * 298.26224 * 9 7 6
29 29 H 1.08989 * 109.47197 * 58.26459 * 9 7 6
30 30 H 0.97000 * 119.99876 * 180.02562 * 13 12 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 6 3.5470 1.4426 0.0006
5 7 4.2464 0.3629 0.0064
6 6 5.6761 0.7297 0.0114
7 6 5.6189 2.2257 0.4076
8 1 5.7470 2.3515 1.4828
9 6 6.6570 3.0401 -0.3669
10 6 6.5415 4.4935 0.0144
11 1 5.8013 4.8051 0.7365
12 6 7.3806 5.4254 -0.5587
13 7 8.2817 5.0459 -1.4385
14 14 7.2369 7.2270 -0.0868
15 1 8.1230 7.5075 1.0713
16 1 7.6427 8.0739 -1.2371
17 1 5.8307 7.5318 0.2806
18 8 4.2788 2.5722 0.0003
19 1 -0.3634 0.5139 -0.8900
20 1 -0.3633 -1.0277 -0.0005
21 1 -0.3634 0.5138 0.8900
22 1 1.8933 -0.5138 -0.8900
23 1 1.8933 -0.5138 0.8899
24 1 1.6766 1.9564 -0.8900
25 1 1.6766 1.9564 0.8900
26 1 6.1176 0.6053 -0.9774
27 1 6.2222 0.1501 0.7556
28 1 7.6566 2.6793 -0.1242
29 1 6.4808 2.9299 -1.4367
30 1 8.8723 5.7014 -1.8414
RHF calculation, no. of doubly occupied orbitals= 37
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260539402.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:39:57
Heat of formation + Delta-G solvation = -36.611508 kcal
Electronic energy + Delta-G solvation = -12306.195299 eV
Core-core repulsion = 10101.425215 eV
Total energy + Delta-G solvation = -2204.770084 eV
No. of doubly occupied orbitals = 37
Molecular weight
(most abundant/longest-lived isotopes) = 197.116 amu
Computer time = 0.15 seconds
Orbital eigenvalues (eV)
-40.49128 -35.25062 -33.31706 -32.73203 -30.93665 -28.20458 -25.75751 -23.06334
-22.16169 -20.61551 -19.22329 -16.63157 -15.95434 -15.77774 -15.15574 -14.61862
-13.79158 -13.73308 -12.60839 -12.59047 -12.42286 -12.11545 -11.84890 -11.45612
-11.18682 -11.14792 -10.94153 -10.64924 -10.61727 -10.47727 -9.97498 -9.46879
-9.05194 -8.44542 -8.43331 -6.05725 -4.07892 2.62818 3.30523 3.36619
3.41486 3.82444 4.42779 4.63366 5.07835 5.09804 5.27660 5.32259
5.39383 5.55432 5.69861 5.73231 5.78695 5.93856 5.98220 6.22631
6.28047 6.33725 6.40448 6.60893 7.04284 7.43112 7.56751 7.90424
8.25703 8.34273 8.95932 9.55824 11.05698
Molecular weight = 197.12amu
Principal moments of inertia in cm(-1)
A = 0.056552 B = 0.007539 C = 0.006874
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 495.001249 B = 3713.027078 C = 4072.077418
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C -0.109 4.109
3 C -0.048 4.048
4 C 0.292 3.708
5 N -0.560 5.560
6 C -0.008 4.008
7 C 0.061 3.939
8 H 0.077 0.923
9 C 0.027 3.973
10 C -0.516 4.516
11 H 0.059 0.941
12 C 0.057 3.943
13 N -0.897 5.897
14 Si 0.896 3.104
15 H -0.280 1.280
16 H -0.286 1.286
17 H -0.273 1.273
18 O -0.328 6.328
19 H 0.054 0.946
20 H 0.055 0.945
21 H 0.053 0.947
22 H 0.070 0.930
23 H 0.069 0.931
24 H 0.092 0.908
25 H 0.091 0.909
26 H 0.087 0.913
27 H 0.088 0.912
28 H 0.039 0.961
29 H 0.027 0.973
30 H 0.262 0.738
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.976 -7.291 2.986 13.511
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C -0.147 4.147
3 C -0.086 4.086
4 C 0.066 3.934
5 N -0.299 5.299
6 C -0.137 4.137
7 C 0.004 3.996
8 H 0.095 0.905
9 C -0.010 4.010
10 C -0.554 4.554
11 H 0.077 0.923
12 C -0.144 4.144
13 N -0.536 5.536
14 Si 0.724 3.276
15 H -0.206 1.206
16 H -0.212 1.212
17 H -0.198 1.198
18 O -0.230 6.230
19 H 0.073 0.927
20 H 0.074 0.926
21 H 0.073 0.927
22 H 0.089 0.911
23 H 0.088 0.912
24 H 0.111 0.889
25 H 0.109 0.891
26 H 0.105 0.895
27 H 0.106 0.894
28 H 0.057 0.943
29 H 0.046 0.954
30 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges -10.882 -7.881 2.818 13.728
hybrid contribution 0.586 1.704 0.215 1.815
sum -10.296 -6.177 3.033 12.384
Atomic orbital electron populations
1.21805 0.95774 1.01679 1.01774 1.21308 0.94774 0.94886 1.03724
1.20315 0.84665 0.99331 1.04275 1.25625 0.96025 0.82859 0.88868
1.74595 1.03203 1.26706 1.25357 1.24104 0.91581 0.95152 1.02861
1.24503 0.81215 0.93875 0.99958 0.90464 1.19261 0.91541 0.94644
0.95518 1.21109 1.17770 0.91874 1.24695 0.92319 1.25008 0.95218
0.99232 0.94973 1.69955 1.20745 1.34425 1.28468 0.86517 0.78457
0.84627 0.77992 1.20614 1.21161 1.19771 1.87106 1.22954 1.32009
1.80979 0.92687 0.92590 0.92749 0.91076 0.91196 0.88945 0.89051
0.89533 0.89392 0.94275 0.95443 0.92858
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.36 9.91 37.16 0.37 -0.99 16
2 C -0.11 -1.26 5.26 -26.73 -0.14 -1.40 16
3 C -0.05 -0.63 5.84 -27.88 -0.16 -0.80 16
4 C 0.29 5.35 7.68 -13.61 -0.10 5.24 16
5 N -0.56 -10.52 10.77 -56.98 -0.61 -11.13 16
6 C -0.01 -0.15 7.70 -2.46 -0.02 -0.17 16
7 C 0.06 1.35 3.69 -25.75 -0.10 1.25 16
8 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16
9 C 0.03 0.71 4.71 -27.88 -0.13 0.58 16
10 C -0.52 -14.79 8.96 -34.44 -0.31 -15.10 16
11 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16
12 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16
13 N -0.90 -26.89 13.29 55.43 0.74 -26.15 16
14 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16
15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16
16 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16
17 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16
18 O -0.33 -7.27 10.74 -15.56 -0.17 -7.44 16
19 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16
20 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16
21 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16
22 H 0.07 0.89 8.13 -51.93 -0.42 0.47 16
23 H 0.07 0.86 8.12 -51.93 -0.42 0.43 16
24 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16
25 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16
26 H 0.09 1.69 7.91 -51.93 -0.41 1.28 16
27 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16
28 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16
29 H 0.03 0.77 8.14 -51.94 -0.42 0.35 16
30 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16
LS Contribution 258.36 15.07 3.89 3.89
Total: -1.00 -31.09 258.36 -6.46 -37.55
By element:
Atomic # 1 Polarization: 0.90 SS G_CDS: -4.60 Total: -3.70 kcal
Atomic # 6 Polarization: -9.15 SS G_CDS: -0.69 Total: -9.84 kcal
Atomic # 7 Polarization: -37.41 SS G_CDS: 0.12 Total: -37.29 kcal
Atomic # 8 Polarization: -7.27 SS G_CDS: -0.17 Total: -7.44 kcal
Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal
Total LS contribution 3.89 Total: 3.89 kcal
Total: -31.09 -6.46 -37.55 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260539402.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 0.942 kcal
(2) G-P(sol) polarization free energy of solvation -31.090 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.148 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.464 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.553 kcal
(6) G-S(sol) free energy of system = (1) + (5) -36.612 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.15 seconds