Wall clock time and date at job start Mon Mar 30 2020 02:39:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.53006 * 109.47127 * 2 1
4 4 C 1.50698 * 109.47184 * 179.97438 * 3 2 1
5 5 N 1.28643 * 122.93674 * 359.71673 * 4 3 2
6 6 C 1.47600 * 108.54823 * 180.25388 * 5 4 3
7 7 C 1.54857 * 101.83739 * 15.32246 * 6 5 4
8 8 H 1.09002 * 111.07143 * 94.52608 * 7 6 5
9 9 C 1.52998 * 111.07667 * 218.56627 * 7 6 5
10 10 C 1.50700 * 109.46917 * 178.26814 * 9 7 6
11 11 H 1.08001 * 119.99854 * 359.97438 * 10 9 7
12 12 C 1.37878 * 120.00100 * 179.97438 * 10 9 7
13 13 N 1.31522 * 119.99635 * 0.02562 * 12 10 9
14 14 Si 1.86793 * 120.00253 * 179.97438 * 12 10 9
15 15 H 1.48493 * 109.47112 * 90.00081 * 14 12 10
16 16 H 1.48503 * 109.47208 * 210.00267 * 14 12 10
17 17 H 1.48505 * 109.47074 * 330.00029 * 14 12 10
18 18 O 1.34594 * 122.93835 * 179.97438 * 4 3 2
19 19 H 1.09004 * 109.47261 * 59.99697 * 1 2 3
20 20 H 1.09002 * 109.47153 * 179.97438 * 1 2 3
21 21 H 1.09001 * 109.47289 * 299.99953 * 1 2 3
22 22 H 1.09001 * 109.46832 * 240.00321 * 2 1 3
23 23 H 1.08993 * 109.47194 * 119.99842 * 2 1 3
24 24 H 1.09001 * 109.46801 * 300.00272 * 3 2 1
25 25 H 1.09001 * 109.46998 * 59.99868 * 3 2 1
26 26 H 1.08997 * 111.15336 * 257.11488 * 6 5 4
27 27 H 1.08994 * 110.82043 * 133.38738 * 6 5 4
28 28 H 1.09000 * 109.46894 * 298.26224 * 9 7 6
29 29 H 1.08989 * 109.47197 * 58.26459 * 9 7 6
30 30 H 0.97000 * 119.99876 * 180.02562 * 13 12 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 6 3.5470 1.4426 0.0006
5 7 4.2464 0.3629 0.0064
6 6 5.6761 0.7297 0.0114
7 6 5.6189 2.2257 0.4076
8 1 5.7470 2.3515 1.4828
9 6 6.6570 3.0401 -0.3669
10 6 6.5415 4.4935 0.0144
11 1 5.8013 4.8051 0.7365
12 6 7.3806 5.4254 -0.5587
13 7 8.2817 5.0459 -1.4385
14 14 7.2369 7.2270 -0.0868
15 1 8.1230 7.5075 1.0713
16 1 7.6427 8.0739 -1.2371
17 1 5.8307 7.5318 0.2806
18 8 4.2788 2.5722 0.0003
19 1 -0.3634 0.5139 -0.8900
20 1 -0.3633 -1.0277 -0.0005
21 1 -0.3634 0.5138 0.8900
22 1 1.8933 -0.5138 -0.8900
23 1 1.8933 -0.5138 0.8899
24 1 1.6766 1.9564 -0.8900
25 1 1.6766 1.9564 0.8900
26 1 6.1176 0.6053 -0.9774
27 1 6.2222 0.1501 0.7556
28 1 7.6566 2.6793 -0.1242
29 1 6.4808 2.9299 -1.4367
30 1 8.8723 5.7014 -1.8414
RHF calculation, no. of doubly occupied orbitals= 37
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260539402.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:39:56
Heat of formation + Delta-G solvation = -59.045300 kcal
Electronic energy + Delta-G solvation = -12307.168101 eV
Core-core repulsion = 10101.425215 eV
Total energy + Delta-G solvation = -2205.742887 eV
No. of doubly occupied orbitals = 37
Molecular weight
(most abundant/longest-lived isotopes) = 197.116 amu
Computer time = 0.17 seconds
Orbital eigenvalues (eV)
-42.09105 -36.41468 -35.34444 -34.27425 -32.72455 -29.61877 -27.37649 -24.94033
-23.34037 -22.26120 -20.64480 -18.66557 -17.55039 -17.41058 -16.63222 -16.27891
-15.33861 -14.86604 -14.40701 -14.11982 -13.75128 -13.54560 -13.32733 -13.24691
-12.70291 -12.50393 -12.43450 -12.35754 -12.04677 -11.73114 -11.54725 -11.46352
-10.90940 -10.64382 -10.03233 -8.25866 -6.36834 1.17257 1.38665 1.40250
1.51897 2.36592 2.39428 3.08351 3.21096 3.72732 3.97534 4.10369
4.20368 4.28458 4.41272 4.57172 4.71687 4.75844 4.78707 4.93590
5.02080 5.24143 5.29173 5.36322 5.45138 5.54599 5.59972 5.68800
6.10723 6.72797 6.79084 7.31774 8.85966
Molecular weight = 197.12amu
Principal moments of inertia in cm(-1)
A = 0.056552 B = 0.007539 C = 0.006874
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 495.001249 B = 3713.027078 C = 4072.077418
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.103 4.103
3 C -0.047 4.047
4 C 0.287 3.713
5 N -0.564 5.564
6 C -0.003 4.003
7 C 0.064 3.936
8 H 0.085 0.915
9 C 0.034 3.966
10 C -0.538 4.538
11 H 0.057 0.943
12 C 0.003 3.997
13 N -0.931 5.931
14 Si 0.968 3.032
15 H -0.268 1.268
16 H -0.280 1.280
17 H -0.267 1.267
18 O -0.353 6.353
19 H 0.061 0.939
20 H 0.064 0.936
21 H 0.064 0.936
22 H 0.058 0.942
23 H 0.061 0.939
24 H 0.106 0.894
25 H 0.111 0.889
26 H 0.079 0.921
27 H 0.111 0.889
28 H 0.027 0.973
29 H -0.003 1.003
30 H 0.266 0.734
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.417 -6.935 3.777 14.715
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.141 4.141
3 C -0.085 4.085
4 C 0.062 3.938
5 N -0.301 5.301
6 C -0.132 4.132
7 C 0.007 3.993
8 H 0.103 0.897
9 C -0.003 4.003
10 C -0.576 4.576
11 H 0.075 0.925
12 C -0.195 4.195
13 N -0.571 5.571
14 Si 0.792 3.208
15 H -0.193 1.193
16 H -0.205 1.205
17 H -0.191 1.191
18 O -0.257 6.257
19 H 0.080 0.920
20 H 0.083 0.917
21 H 0.083 0.917
22 H 0.077 0.923
23 H 0.080 0.920
24 H 0.124 0.876
25 H 0.129 0.871
26 H 0.097 0.903
27 H 0.129 0.871
28 H 0.045 0.955
29 H 0.015 0.985
30 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges -12.333 -7.550 3.615 14.905
hybrid contribution 1.026 1.553 -0.056 1.862
sum -11.307 -5.997 3.558 13.284
Atomic orbital electron populations
1.21762 0.93386 1.02628 1.02660 1.21262 0.96701 0.93385 1.02710
1.20618 0.81126 1.00930 1.05814 1.26573 0.97901 0.81492 0.87871
1.74612 1.02641 1.26734 1.26130 1.24076 0.92483 0.93513 1.03131
1.24256 0.80682 0.94890 0.99497 0.89746 1.19062 0.92468 0.94671
0.94143 1.21449 1.17927 0.93307 1.24926 0.92507 1.25943 0.94650
1.04215 0.94716 1.70074 1.21480 1.36184 1.29404 0.85398 0.78805
0.78520 0.78051 1.19337 1.20539 1.19116 1.87065 1.23056 1.34004
1.81530 0.91958 0.91664 0.91711 0.92345 0.91989 0.87598 0.87055
0.90298 0.87098 0.95503 0.98501 0.92523
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.20 9.91 71.98 0.71 -1.49 16
2 C -0.10 -2.17 5.26 30.60 0.16 -2.01 16
3 C -0.05 -1.15 5.84 29.85 0.17 -0.98 16
4 C 0.29 10.22 7.68 88.57 0.68 10.90 16
5 N -0.56 -20.65 10.77 -449.43 -4.84 -25.49 16
6 C 0.00 -0.11 7.70 86.80 0.67 0.56 16
7 C 0.06 2.82 3.69 31.23 0.12 2.93 16
8 H 0.08 3.59 8.14 -2.39 -0.02 3.57 16
9 C 0.03 1.81 4.71 29.85 0.14 1.95 16
10 C -0.54 -31.19 8.96 25.60 0.23 -30.96 16
11 H 0.06 3.24 7.74 -2.91 -0.02 3.21 16
12 C 0.00 0.16 5.46 84.65 0.46 0.63 16
13 N -0.93 -56.55 13.29 21.45 0.28 -56.26 16
14 Si 0.97 44.60 29.54 68.60 2.03 46.63 16
15 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16
16 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16
17 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16
18 O -0.35 -15.59 10.74 -78.59 -0.84 -16.43 16
19 H 0.06 0.85 8.14 -2.38 -0.02 0.84 16
20 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16
21 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16
22 H 0.06 1.38 8.13 -2.39 -0.02 1.36 16
23 H 0.06 1.41 8.12 -2.39 -0.02 1.39 16
24 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16
25 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16
26 H 0.08 3.12 7.91 -2.39 -0.02 3.10 16
27 H 0.11 3.68 8.14 -2.39 -0.02 3.66 16
28 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16
29 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16
30 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16
Total: -1.00 -66.24 258.36 1.07 -65.17
By element:
Atomic # 1 Polarization: 3.76 SS G_CDS: 1.10 Total: 4.85 kcal
Atomic # 6 Polarization: -21.81 SS G_CDS: 3.35 Total: -18.47 kcal
Atomic # 7 Polarization: -77.20 SS G_CDS: -4.55 Total: -81.75 kcal
Atomic # 8 Polarization: -15.59 SS G_CDS: -0.84 Total: -16.43 kcal
Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal
Total: -66.24 1.07 -65.17 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260539402.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 6.129 kcal
(2) G-P(sol) polarization free energy of solvation -66.244 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.115 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.069 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.175 kcal
(6) G-S(sol) free energy of system = (1) + (5) -59.045 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.18 seconds