Wall clock time and date at job start Mon Mar 30 2020 02:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50698 * 109.47184 * 179.97438 * 3 2 1 5 5 N 1.28643 * 122.93674 * 359.71673 * 4 3 2 6 6 C 1.47600 * 108.54823 * 180.25388 * 5 4 3 7 7 C 1.54857 * 101.83739 * 15.32246 * 6 5 4 8 8 H 1.09002 * 111.07143 * 94.52608 * 7 6 5 9 9 C 1.52998 * 111.07667 * 218.56627 * 7 6 5 10 10 C 1.50700 * 109.46917 * 178.26814 * 9 7 6 11 11 H 1.08001 * 119.99854 * 359.97438 * 10 9 7 12 12 C 1.37878 * 120.00100 * 179.97438 * 10 9 7 13 13 N 1.31522 * 119.99635 * 0.02562 * 12 10 9 14 14 Si 1.86793 * 120.00253 * 179.97438 * 12 10 9 15 15 H 1.48493 * 109.47112 * 90.00081 * 14 12 10 16 16 H 1.48503 * 109.47208 * 210.00267 * 14 12 10 17 17 H 1.48505 * 109.47074 * 330.00029 * 14 12 10 18 18 O 1.34594 * 122.93835 * 179.97438 * 4 3 2 19 19 H 1.09004 * 109.47261 * 59.99697 * 1 2 3 20 20 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47289 * 299.99953 * 1 2 3 22 22 H 1.09001 * 109.46832 * 240.00321 * 2 1 3 23 23 H 1.08993 * 109.47194 * 119.99842 * 2 1 3 24 24 H 1.09001 * 109.46801 * 300.00272 * 3 2 1 25 25 H 1.09001 * 109.46998 * 59.99868 * 3 2 1 26 26 H 1.08997 * 111.15336 * 257.11488 * 6 5 4 27 27 H 1.08994 * 110.82043 * 133.38738 * 6 5 4 28 28 H 1.09000 * 109.46894 * 298.26224 * 9 7 6 29 29 H 1.08989 * 109.47197 * 58.26459 * 9 7 6 30 30 H 0.97000 * 119.99876 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4426 0.0006 5 7 4.2464 0.3629 0.0064 6 6 5.6761 0.7297 0.0114 7 6 5.6189 2.2257 0.4076 8 1 5.7470 2.3515 1.4828 9 6 6.6570 3.0401 -0.3669 10 6 6.5415 4.4935 0.0144 11 1 5.8013 4.8051 0.7365 12 6 7.3806 5.4254 -0.5587 13 7 8.2817 5.0459 -1.4385 14 14 7.2369 7.2270 -0.0868 15 1 8.1230 7.5075 1.0713 16 1 7.6427 8.0739 -1.2371 17 1 5.8307 7.5318 0.2806 18 8 4.2788 2.5722 0.0003 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8899 24 1 1.6766 1.9564 -0.8900 25 1 1.6766 1.9564 0.8900 26 1 6.1176 0.6053 -0.9774 27 1 6.2222 0.1501 0.7556 28 1 7.6566 2.6793 -0.1242 29 1 6.4808 2.9299 -1.4367 30 1 8.8723 5.7014 -1.8414 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260539402.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:56 Heat of formation + Delta-G solvation = -59.045300 kcal Electronic energy + Delta-G solvation = -12307.168101 eV Core-core repulsion = 10101.425215 eV Total energy + Delta-G solvation = -2205.742887 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.09105 -36.41468 -35.34444 -34.27425 -32.72455 -29.61877 -27.37649 -24.94033 -23.34037 -22.26120 -20.64480 -18.66557 -17.55039 -17.41058 -16.63222 -16.27891 -15.33861 -14.86604 -14.40701 -14.11982 -13.75128 -13.54560 -13.32733 -13.24691 -12.70291 -12.50393 -12.43450 -12.35754 -12.04677 -11.73114 -11.54725 -11.46352 -10.90940 -10.64382 -10.03233 -8.25866 -6.36834 1.17257 1.38665 1.40250 1.51897 2.36592 2.39428 3.08351 3.21096 3.72732 3.97534 4.10369 4.20368 4.28458 4.41272 4.57172 4.71687 4.75844 4.78707 4.93590 5.02080 5.24143 5.29173 5.36322 5.45138 5.54599 5.59972 5.68800 6.10723 6.72797 6.79084 7.31774 8.85966 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.056552 B = 0.007539 C = 0.006874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.001249 B = 3713.027078 C = 4072.077418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.103 4.103 3 C -0.047 4.047 4 C 0.287 3.713 5 N -0.564 5.564 6 C -0.003 4.003 7 C 0.064 3.936 8 H 0.085 0.915 9 C 0.034 3.966 10 C -0.538 4.538 11 H 0.057 0.943 12 C 0.003 3.997 13 N -0.931 5.931 14 Si 0.968 3.032 15 H -0.268 1.268 16 H -0.280 1.280 17 H -0.267 1.267 18 O -0.353 6.353 19 H 0.061 0.939 20 H 0.064 0.936 21 H 0.064 0.936 22 H 0.058 0.942 23 H 0.061 0.939 24 H 0.106 0.894 25 H 0.111 0.889 26 H 0.079 0.921 27 H 0.111 0.889 28 H 0.027 0.973 29 H -0.003 1.003 30 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.417 -6.935 3.777 14.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.141 4.141 3 C -0.085 4.085 4 C 0.062 3.938 5 N -0.301 5.301 6 C -0.132 4.132 7 C 0.007 3.993 8 H 0.103 0.897 9 C -0.003 4.003 10 C -0.576 4.576 11 H 0.075 0.925 12 C -0.195 4.195 13 N -0.571 5.571 14 Si 0.792 3.208 15 H -0.193 1.193 16 H -0.205 1.205 17 H -0.191 1.191 18 O -0.257 6.257 19 H 0.080 0.920 20 H 0.083 0.917 21 H 0.083 0.917 22 H 0.077 0.923 23 H 0.080 0.920 24 H 0.124 0.876 25 H 0.129 0.871 26 H 0.097 0.903 27 H 0.129 0.871 28 H 0.045 0.955 29 H 0.015 0.985 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.333 -7.550 3.615 14.905 hybrid contribution 1.026 1.553 -0.056 1.862 sum -11.307 -5.997 3.558 13.284 Atomic orbital electron populations 1.21762 0.93386 1.02628 1.02660 1.21262 0.96701 0.93385 1.02710 1.20618 0.81126 1.00930 1.05814 1.26573 0.97901 0.81492 0.87871 1.74612 1.02641 1.26734 1.26130 1.24076 0.92483 0.93513 1.03131 1.24256 0.80682 0.94890 0.99497 0.89746 1.19062 0.92468 0.94671 0.94143 1.21449 1.17927 0.93307 1.24926 0.92507 1.25943 0.94650 1.04215 0.94716 1.70074 1.21480 1.36184 1.29404 0.85398 0.78805 0.78520 0.78051 1.19337 1.20539 1.19116 1.87065 1.23056 1.34004 1.81530 0.91958 0.91664 0.91711 0.92345 0.91989 0.87598 0.87055 0.90298 0.87098 0.95503 0.98501 0.92523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.91 71.98 0.71 -1.49 16 2 C -0.10 -2.17 5.26 30.60 0.16 -2.01 16 3 C -0.05 -1.15 5.84 29.85 0.17 -0.98 16 4 C 0.29 10.22 7.68 88.57 0.68 10.90 16 5 N -0.56 -20.65 10.77 -449.43 -4.84 -25.49 16 6 C 0.00 -0.11 7.70 86.80 0.67 0.56 16 7 C 0.06 2.82 3.69 31.23 0.12 2.93 16 8 H 0.08 3.59 8.14 -2.39 -0.02 3.57 16 9 C 0.03 1.81 4.71 29.85 0.14 1.95 16 10 C -0.54 -31.19 8.96 25.60 0.23 -30.96 16 11 H 0.06 3.24 7.74 -2.91 -0.02 3.21 16 12 C 0.00 0.16 5.46 84.65 0.46 0.63 16 13 N -0.93 -56.55 13.29 21.45 0.28 -56.26 16 14 Si 0.97 44.60 29.54 68.60 2.03 46.63 16 15 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 16 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 17 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 18 O -0.35 -15.59 10.74 -78.59 -0.84 -16.43 16 19 H 0.06 0.85 8.14 -2.38 -0.02 0.84 16 20 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 21 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 22 H 0.06 1.38 8.13 -2.39 -0.02 1.36 16 23 H 0.06 1.41 8.12 -2.39 -0.02 1.39 16 24 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 25 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 26 H 0.08 3.12 7.91 -2.39 -0.02 3.10 16 27 H 0.11 3.68 8.14 -2.39 -0.02 3.66 16 28 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 30 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -66.24 258.36 1.07 -65.17 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: 1.10 Total: 4.85 kcal Atomic # 6 Polarization: -21.81 SS G_CDS: 3.35 Total: -18.47 kcal Atomic # 7 Polarization: -77.20 SS G_CDS: -4.55 Total: -81.75 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -0.84 Total: -16.43 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -66.24 1.07 -65.17 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260539402.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.129 kcal (2) G-P(sol) polarization free energy of solvation -66.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds