Wall clock time and date at job start Mon Mar 30 2020 02:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47175 * 2 1 4 4 C 1.53001 * 109.46958 * 239.99995 * 2 1 3 5 5 C 1.50701 * 109.47399 * 120.00141 * 2 1 3 6 6 N 1.28635 * 122.93685 * 359.97208 * 5 2 1 7 7 C 1.47606 * 108.54989 * 180.40796 * 6 5 2 8 8 H 1.08996 * 110.97569 * 256.79229 * 7 6 5 9 9 C 1.50701 * 110.94283 * 133.10270 * 7 6 5 10 10 H 1.08002 * 119.99761 * 247.49018 * 9 7 6 11 11 C 1.37871 * 119.99694 * 67.77581 * 9 7 6 12 12 N 1.31514 * 120.00482 * 359.71466 * 11 9 7 13 13 Si 1.86801 * 119.99746 * 179.72062 * 11 9 7 14 14 H 1.48504 * 109.47209 * 89.99886 * 13 11 9 15 15 H 1.48501 * 109.47358 * 209.99377 * 13 11 9 16 16 H 1.48496 * 109.47341 * 329.99989 * 13 11 9 17 17 C 1.54856 * 101.88940 * 14.95581 * 7 6 5 18 18 O 1.34597 * 122.93963 * 179.97438 * 5 2 1 19 19 H 1.08999 * 109.47111 * 299.99667 * 1 2 3 20 20 H 1.08998 * 109.47321 * 59.99938 * 1 2 3 21 21 H 1.09010 * 109.47048 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47287 * 180.02562 * 3 2 1 23 23 H 1.08998 * 109.47047 * 300.00230 * 3 2 1 24 24 H 1.08999 * 109.46829 * 60.00160 * 3 2 1 25 25 H 1.08994 * 109.47492 * 299.99857 * 4 2 1 26 26 H 1.08998 * 109.47050 * 59.99901 * 4 2 1 27 27 H 1.09004 * 109.47262 * 179.97438 * 4 2 1 28 28 H 0.96995 * 120.00207 * 179.97438 * 12 11 9 29 29 H 1.09000 * 111.07747 * 94.74062 * 17 7 6 30 30 H 1.09003 * 111.07254 * 218.73674 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0323 -0.7104 1.2304 6 7 1.2477 -1.2197 2.1134 7 6 2.0701 -1.8240 3.1798 8 1 2.0995 -2.9092 3.0821 9 6 1.5663 -1.4218 4.5419 10 1 2.1660 -0.7819 5.1722 11 6 0.3424 -1.8756 4.9859 12 7 -0.3879 -2.6548 4.2184 13 14 -0.2786 -1.3833 6.6774 14 1 -1.0622 -0.1263 6.5707 15 1 -1.1440 -2.4613 7.2201 16 1 0.8763 -1.1709 7.5863 17 6 3.4615 -1.2050 2.8992 18 8 3.3413 -0.8676 1.5016 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0278 0.0005 22 1 3.1299 1.4425 -0.0005 23 1 1.6766 1.9563 -0.8900 24 1 1.6766 1.9563 0.8900 25 1 1.6766 -1.7489 -1.2493 26 1 1.6765 -0.2074 -2.1392 27 1 3.1299 -0.7209 -1.2495 28 1 -1.2488 -2.9743 4.5309 29 1 3.6234 -0.3136 3.5052 30 1 4.2549 -1.9349 3.0600 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260693542.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:26 Heat of formation + Delta-G solvation = -27.243716 kcal Electronic energy + Delta-G solvation = -12923.646141 eV Core-core repulsion = 10719.282274 eV Total energy + Delta-G solvation = -2204.363866 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.98158 -36.09511 -33.33347 -31.50469 -28.80174 -26.94465 -26.72925 -24.90523 -21.92933 -20.73468 -18.04550 -16.62546 -15.73444 -15.01721 -14.46298 -14.21825 -13.61174 -13.50858 -12.87292 -12.20647 -11.94614 -11.88841 -11.63899 -11.27500 -11.02917 -10.88013 -10.70998 -10.56874 -10.44839 -10.32683 -9.91347 -9.48740 -8.73158 -8.48606 -7.72547 -6.01830 -4.14288 3.29178 3.35500 3.36886 3.46355 4.23019 4.41719 5.03523 5.32412 5.36195 5.41758 5.72440 5.90397 6.00471 6.09145 6.12377 6.13494 6.22037 6.26106 6.33888 6.39453 6.51392 6.68946 6.90076 7.00441 7.32249 7.65949 7.83735 8.20973 8.78940 9.20760 9.53677 11.05931 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.047583 B = 0.010820 C = 0.009980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.298916 B = 2587.185610 C = 2804.828239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.016 3.984 3 C -0.137 4.137 4 C -0.136 4.136 5 C 0.229 3.771 6 N -0.463 5.463 7 C 0.157 3.843 8 H 0.059 0.941 9 C -0.527 4.527 10 H 0.060 0.940 11 C 0.080 3.920 12 N -0.858 5.858 13 Si 0.893 3.107 14 H -0.279 1.279 15 H -0.285 1.285 16 H -0.273 1.273 17 C 0.022 3.978 18 O -0.369 6.369 19 H 0.064 0.936 20 H 0.050 0.950 21 H 0.064 0.936 22 H 0.058 0.942 23 H 0.059 0.941 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.261 0.739 29 H 0.066 0.934 30 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.493 4.815 -7.554 9.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.015 3.985 3 C -0.195 4.195 4 C -0.194 4.194 5 C -0.001 4.001 6 N -0.193 5.193 7 C 0.051 3.949 8 H 0.076 0.924 9 C -0.565 4.565 10 H 0.079 0.921 11 C -0.126 4.126 12 N -0.493 5.493 13 Si 0.720 3.280 14 H -0.205 1.205 15 H -0.211 1.211 16 H -0.198 1.198 17 C -0.055 4.055 18 O -0.275 6.275 19 H 0.083 0.917 20 H 0.069 0.931 21 H 0.083 0.917 22 H 0.077 0.923 23 H 0.078 0.922 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.625 4.527 -7.405 9.068 hybrid contribution 0.404 0.144 1.214 1.287 sum 3.029 4.671 -6.191 8.326 Atomic orbital electron populations 1.21650 0.92271 1.03086 1.01195 1.19087 0.96310 0.93876 0.89265 1.21833 1.01364 0.94542 1.01776 1.21822 1.01350 1.00443 0.95798 1.25249 0.80595 0.97182 0.97053 1.75043 1.32027 1.09233 1.03044 1.21202 0.84481 0.96449 0.92795 0.92363 1.20743 1.04622 1.33030 0.98131 0.92138 1.24987 0.96442 0.94173 0.97043 1.70038 1.11553 1.31883 1.35850 0.86597 0.78905 0.78335 0.84129 1.20515 1.21064 1.19814 1.24660 1.02003 0.99859 0.79018 1.86745 1.26634 1.85911 1.28258 0.91734 0.93088 0.91672 0.92257 0.92243 0.92375 0.92378 0.92300 0.92262 0.92969 0.91546 0.89711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.13 7.80 37.15 0.29 -1.84 16 2 C 0.02 0.28 0.99 -155.66 -0.15 0.12 16 3 C -0.14 -2.04 8.45 37.16 0.31 -1.72 16 4 C -0.14 -2.00 8.45 37.16 0.31 -1.68 16 5 C 0.23 5.10 6.19 -13.62 -0.08 5.02 16 6 N -0.46 -12.16 10.27 -51.72 -0.53 -12.69 16 7 C 0.16 4.22 3.50 -67.50 -0.24 3.99 16 8 H 0.06 1.68 8.14 -51.93 -0.42 1.26 16 9 C -0.53 -14.98 8.78 -34.44 -0.30 -15.28 16 10 H 0.06 1.67 7.61 -52.49 -0.40 1.27 16 11 C 0.08 2.29 5.45 -17.82 -0.10 2.19 16 12 N -0.86 -25.67 13.16 55.43 0.73 -24.94 16 13 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 14 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 15 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 16 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 17 C 0.02 0.48 7.73 38.14 0.29 0.78 16 18 O -0.37 -8.19 11.17 -15.57 -0.17 -8.37 16 19 H 0.06 1.22 8.13 -51.93 -0.42 0.80 16 20 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 21 H 0.06 1.22 8.13 -51.92 -0.42 0.80 16 22 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 23 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 25 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 29 H 0.07 1.46 7.78 -51.93 -0.40 1.06 16 30 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16 LS Contribution 256.03 15.07 3.86 3.86 Total: -1.00 -31.24 256.03 -5.39 -36.63 By element: Atomic # 1 Polarization: 1.97 SS G_CDS: -4.59 Total: -2.62 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: 0.34 Total: -8.43 kcal Atomic # 7 Polarization: -37.83 SS G_CDS: 0.20 Total: -37.63 kcal Atomic # 8 Polarization: -8.19 SS G_CDS: -0.17 Total: -8.37 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -31.24 -5.39 -36.63 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260693542.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.382 kcal (2) G-P(sol) polarization free energy of solvation -31.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds