Wall clock time and date at job start Mon Mar 30 2020 02:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86806 * 120.00064 * 2 1 4 4 H 1.48495 * 109.47082 * 239.99956 * 3 2 1 5 5 H 1.48491 * 109.47186 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46682 * 120.00206 * 3 2 1 7 7 C 1.37880 * 119.99788 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99815 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99738 * 0.02562 * 7 2 1 10 10 O 1.42892 * 110.87698 * 56.15474 * 9 7 2 11 11 C 1.55164 * 110.98583 * 180.02562 * 9 7 2 12 12 C 1.54132 * 102.88498 * 154.24877 * 11 9 7 13 13 H 1.09005 * 111.33594 * 97.76666 * 12 11 9 14 14 C 1.54139 * 109.31759 * 220.43663 * 12 11 9 15 15 C 1.55164 * 103.04696 * 139.65050 * 14 12 11 16 16 C 1.54835 * 101.65725 * 323.75243 * 15 14 12 17 17 N 1.47959 * 105.06657 * 36.67557 * 16 15 14 18 18 C 1.47955 * 109.40853 * 219.20377 * 17 16 15 19 19 H 0.97003 * 119.99441 * 359.97438 * 1 2 3 20 20 H 0.96702 * 114.00320 * 303.83989 * 10 9 7 21 21 H 1.08996 * 110.73159 * 35.89910 * 11 9 7 22 22 H 1.09002 * 110.72605 * 272.59558 * 11 9 7 23 23 H 1.09002 * 110.72993 * 21.21190 * 14 12 11 24 24 H 1.09001 * 110.72843 * 258.08912 * 14 12 11 25 25 H 1.08996 * 110.98942 * 81.84640 * 15 14 12 26 26 H 1.09004 * 110.98961 * 205.66080 * 15 14 12 27 27 H 1.09003 * 110.32090 * 155.57033 * 16 15 14 28 28 H 1.08993 * 110.32285 * 277.77764 * 16 15 14 29 29 H 1.09003 * 110.32115 * 259.69037 * 18 17 16 30 30 H 1.09001 * 110.32211 * 21.89824 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0017 10 8 0.3528 -2.5675 -1.1110 11 6 2.2276 -3.7048 -0.0015 12 6 1.3919 -4.8240 0.6502 13 1 0.9435 -5.4733 -0.1019 14 6 2.2855 -5.6352 1.6089 15 6 1.3549 -5.8895 2.8242 16 6 0.5551 -4.5653 2.8883 17 7 0.3465 -4.1733 1.4769 18 6 0.4950 -2.7070 1.3468 19 1 -0.4849 0.8401 0.0004 20 1 -0.2770 -1.8349 -1.1529 21 1 3.1117 -3.4851 0.5970 22 1 2.5071 -3.9751 -1.0198 23 1 3.1588 -5.0547 1.9065 24 1 2.5877 -6.5769 1.1507 25 1 0.6939 -6.7363 2.6394 26 1 1.9345 -6.0401 3.7351 27 1 -0.4032 -4.7254 3.3824 28 1 1.1292 -3.8013 3.4125 29 1 -0.4840 -2.2290 1.3115 30 1 1.0810 -2.3108 2.1761 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260722374.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:00 Heat of formation + Delta-G solvation = -50.300118 kcal Electronic energy + Delta-G solvation = -13263.127518 eV Core-core repulsion = 11057.763851 eV Total energy + Delta-G solvation = -2205.363667 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.15239 -35.42907 -32.06868 -31.45304 -30.43239 -27.25359 -24.64061 -24.18870 -20.86238 -19.35345 -18.98872 -16.92377 -15.78180 -15.02196 -14.57940 -14.14831 -13.34659 -13.26239 -12.61024 -12.21931 -11.74224 -11.46659 -11.31549 -11.15265 -10.91345 -10.80136 -10.49469 -10.37182 -10.20929 -10.07973 -9.89175 -9.17673 -8.56373 -8.07024 -7.52322 -6.21046 -4.29179 3.23512 3.28725 3.31318 4.29577 4.83414 5.00863 5.13752 5.20911 5.45934 5.75319 5.89580 5.99438 6.02641 6.11821 6.24661 6.28840 6.37764 6.40294 6.62439 6.75120 6.91381 6.97550 7.43644 7.51500 7.78064 7.80702 7.89881 8.18191 8.73112 9.39913 9.64087 10.85899 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.055658 B = 0.011201 C = 0.011133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.949996 B = 2499.193807 C = 2514.440802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.070 3.930 3 Si 0.901 3.099 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.538 4.538 8 H 0.061 0.939 9 C 0.251 3.749 10 O -0.582 6.582 11 C -0.123 4.123 12 C 0.064 3.936 13 H 0.081 0.919 14 C -0.140 4.140 15 C -0.131 4.131 16 C 0.032 3.968 17 N -0.514 5.514 18 C 0.026 3.974 19 H 0.269 0.731 20 H 0.383 0.617 21 H 0.066 0.934 22 H 0.063 0.937 23 H 0.066 0.934 24 H 0.064 0.936 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.044 0.956 29 H 0.080 0.920 30 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.379 -6.497 4.078 8.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.132 4.132 3 Si 0.728 3.272 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.202 1.202 7 C -0.576 4.576 8 H 0.079 0.921 9 C 0.210 3.790 10 O -0.392 6.392 11 C -0.161 4.161 12 C -0.044 4.044 13 H 0.099 0.901 14 C -0.178 4.178 15 C -0.169 4.169 16 C -0.097 4.097 17 N -0.238 5.238 18 C -0.102 4.102 19 H 0.079 0.921 20 H 0.235 0.765 21 H 0.085 0.915 22 H 0.081 0.919 23 H 0.084 0.916 24 H 0.083 0.917 25 H 0.087 0.913 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.062 0.938 29 H 0.098 0.902 30 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 1.998 -7.071 3.786 8.266 hybrid contribution 0.934 1.748 0.531 2.052 sum 2.933 -5.324 4.317 7.455 Atomic orbital electron populations 1.69584 1.05935 1.27678 1.50456 1.25045 0.95011 0.99488 0.93644 0.86516 0.79581 0.82356 0.78745 1.20043 1.21064 1.20179 1.21588 0.93559 0.90794 1.51664 0.92082 1.19787 0.85596 0.91102 0.82510 1.86062 1.51023 1.52780 1.49342 1.22837 0.97698 0.95518 1.00038 1.23000 0.90580 0.95569 0.95237 0.90107 1.22974 0.98315 1.00156 0.96370 1.22730 0.98064 0.98185 0.97889 1.23261 0.98835 0.95643 0.91949 1.65611 1.44629 1.08980 1.04564 1.24121 1.01443 0.84556 1.00062 0.92088 0.76543 0.91507 0.91862 0.91567 0.91690 0.91324 0.91765 0.91298 0.93789 0.90158 0.94275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.36 10.74 55.43 0.60 -23.77 16 2 C 0.07 1.89 5.30 -17.82 -0.09 1.79 16 3 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.54 -14.69 8.26 -34.44 -0.28 -14.97 16 8 H 0.06 1.65 7.77 -52.49 -0.41 1.24 16 9 C 0.25 6.46 0.90 -89.03 -0.08 6.38 16 10 O -0.58 -15.93 13.19 -35.23 -0.46 -16.39 16 11 C -0.12 -2.71 5.64 -24.99 -0.14 -2.85 16 12 C 0.06 1.28 4.07 -65.74 -0.27 1.01 16 13 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 14 C -0.14 -2.22 6.46 -24.99 -0.16 -2.39 16 15 C -0.13 -1.93 7.07 -24.62 -0.17 -2.10 16 16 C 0.03 0.56 6.72 -2.27 -0.02 0.54 16 17 N -0.51 -10.98 5.76 -219.15 -1.26 -12.24 16 18 C 0.03 0.63 5.51 -1.65 -0.01 0.62 16 19 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 20 H 0.38 10.64 6.93 45.56 0.32 10.96 16 21 H 0.07 1.42 7.19 -51.93 -0.37 1.04 16 22 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 23 H 0.07 1.05 7.30 -51.93 -0.38 0.67 16 24 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 28 H 0.04 0.79 7.08 -51.93 -0.37 0.43 16 29 H 0.08 2.12 7.77 -51.93 -0.40 1.72 16 30 H 0.04 0.97 6.97 -51.93 -0.36 0.60 16 LS Contribution 238.64 15.07 3.60 3.60 Total: -1.00 -27.96 238.64 -7.43 -35.39 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -3.65 Total: 9.60 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: -1.23 Total: -11.96 kcal Atomic # 7 Polarization: -35.35 SS G_CDS: -0.67 Total: -36.01 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: -0.46 Total: -16.39 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -27.96 -7.43 -35.39 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260722374.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.908 kcal (2) G-P(sol) polarization free energy of solvation -27.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds