Wall clock time and date at job start Mon Mar 30 2020 02:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86806 * 120.00064 * 2 1 4 4 H 1.48495 * 109.47082 * 239.99956 * 3 2 1 5 5 H 1.48491 * 109.47186 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46682 * 120.00206 * 3 2 1 7 7 C 1.37880 * 119.99788 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99815 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99738 * 0.02562 * 7 2 1 10 10 O 1.42892 * 110.87698 * 56.15474 * 9 7 2 11 11 C 1.55164 * 110.98583 * 180.02562 * 9 7 2 12 12 C 1.54132 * 102.88498 * 154.24877 * 11 9 7 13 13 H 1.09005 * 111.33594 * 97.76666 * 12 11 9 14 14 C 1.54139 * 109.31759 * 220.43663 * 12 11 9 15 15 C 1.55164 * 103.04696 * 139.65050 * 14 12 11 16 16 C 1.54835 * 101.65725 * 323.75243 * 15 14 12 17 17 N 1.47959 * 105.06657 * 36.67557 * 16 15 14 18 18 C 1.47955 * 109.40853 * 219.20377 * 17 16 15 19 19 H 0.97003 * 119.99441 * 359.97438 * 1 2 3 20 20 H 0.96702 * 114.00320 * 303.83989 * 10 9 7 21 21 H 1.08996 * 110.73159 * 35.89910 * 11 9 7 22 22 H 1.09002 * 110.72605 * 272.59558 * 11 9 7 23 23 H 1.09002 * 110.72993 * 21.21190 * 14 12 11 24 24 H 1.09001 * 110.72843 * 258.08912 * 14 12 11 25 25 H 1.08996 * 110.98942 * 81.84640 * 15 14 12 26 26 H 1.09004 * 110.98961 * 205.66080 * 15 14 12 27 27 H 1.09003 * 110.32090 * 155.57033 * 16 15 14 28 28 H 1.08993 * 110.32285 * 277.77764 * 16 15 14 29 29 H 1.09003 * 110.32115 * 259.69037 * 18 17 16 30 30 H 1.09001 * 110.32211 * 21.89824 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0017 10 8 0.3528 -2.5675 -1.1110 11 6 2.2276 -3.7048 -0.0015 12 6 1.3919 -4.8240 0.6502 13 1 0.9435 -5.4733 -0.1019 14 6 2.2855 -5.6352 1.6089 15 6 1.3549 -5.8895 2.8242 16 6 0.5551 -4.5653 2.8883 17 7 0.3465 -4.1733 1.4769 18 6 0.4950 -2.7070 1.3468 19 1 -0.4849 0.8401 0.0004 20 1 -0.2770 -1.8349 -1.1529 21 1 3.1117 -3.4851 0.5970 22 1 2.5071 -3.9751 -1.0198 23 1 3.1588 -5.0547 1.9065 24 1 2.5877 -6.5769 1.1507 25 1 0.6939 -6.7363 2.6394 26 1 1.9345 -6.0401 3.7351 27 1 -0.4032 -4.7254 3.3824 28 1 1.1292 -3.8013 3.4125 29 1 -0.4840 -2.2290 1.3115 30 1 1.0810 -2.3108 2.1761 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260722374.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:59 Heat of formation + Delta-G solvation = -71.319581 kcal Electronic energy + Delta-G solvation = -13264.038991 eV Core-core repulsion = 11057.763851 eV Total energy + Delta-G solvation = -2206.275139 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.79517 -37.31605 -34.15292 -33.13541 -32.03779 -29.07893 -26.24669 -26.09861 -22.29469 -21.18239 -20.61094 -18.97520 -17.37786 -16.98852 -16.22139 -15.88895 -15.12055 -14.95606 -14.22322 -13.98419 -13.39815 -13.33804 -12.99246 -12.92882 -12.70007 -12.31904 -12.22281 -12.10911 -11.88770 -11.59806 -11.51958 -11.07954 -10.59295 -10.10384 -9.21641 -8.24894 -6.41609 1.39816 1.40931 1.49209 2.35933 2.98479 3.29782 3.74958 3.77706 3.99621 4.14175 4.34017 4.43621 4.53433 4.63127 4.75482 4.80652 4.97079 5.05237 5.06398 5.13943 5.20770 5.35019 5.47114 5.55882 5.78634 6.00401 6.15931 6.29578 6.65113 7.30678 7.47443 8.80594 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.055658 B = 0.011201 C = 0.011133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.949996 B = 2499.193807 C = 2514.440802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.027 3.973 3 Si 0.964 3.036 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.270 1.270 7 C -0.565 4.565 8 H 0.057 0.943 9 C 0.229 3.771 10 O -0.593 6.593 11 C -0.119 4.119 12 C 0.061 3.939 13 H 0.078 0.922 14 C -0.132 4.132 15 C -0.118 4.118 16 C 0.024 3.976 17 N -0.529 5.529 18 C 0.043 3.957 19 H 0.271 0.729 20 H 0.376 0.624 21 H 0.073 0.927 22 H 0.060 0.940 23 H 0.067 0.933 24 H 0.092 0.908 25 H 0.082 0.918 26 H 0.093 0.907 27 H 0.079 0.921 28 H 0.037 0.963 29 H 0.049 0.951 30 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.378 -7.417 4.972 9.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.173 4.173 3 Si 0.789 3.211 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.195 1.195 7 C -0.603 4.603 8 H 0.076 0.924 9 C 0.189 3.811 10 O -0.402 6.402 11 C -0.157 4.157 12 C -0.047 4.047 13 H 0.096 0.904 14 C -0.171 4.171 15 C -0.155 4.155 16 C -0.104 4.104 17 N -0.253 5.253 18 C -0.085 4.085 19 H 0.081 0.919 20 H 0.226 0.774 21 H 0.092 0.908 22 H 0.079 0.921 23 H 0.085 0.915 24 H 0.111 0.889 25 H 0.101 0.899 26 H 0.112 0.888 27 H 0.097 0.903 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 3.002 -8.014 4.687 9.757 hybrid contribution 0.584 2.022 0.239 2.118 sum 3.587 -5.992 4.925 8.546 Atomic orbital electron populations 1.69681 1.07017 1.28471 1.50317 1.25795 0.95855 1.02586 0.93072 0.85529 0.78410 0.78406 0.78800 1.19812 1.20440 1.19541 1.21869 0.93626 0.92139 1.52658 0.92436 1.20119 0.86147 0.92287 0.82542 1.86049 1.51218 1.52455 1.50456 1.22822 0.97482 0.94959 1.00419 1.23035 0.90647 0.95092 0.95916 0.90402 1.22926 0.97627 1.00634 0.95869 1.22716 0.97703 0.96541 0.98585 1.23384 1.00064 0.97294 0.89636 1.65513 1.45817 1.06818 1.07197 1.23727 0.99133 0.86651 0.98998 0.91912 0.77361 0.90818 0.92106 0.91458 0.88903 0.89937 0.88846 0.90275 0.94429 0.93247 0.95366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.55 10.74 21.45 0.23 -50.32 16 2 C 0.03 1.47 5.30 84.65 0.45 1.92 16 3 Si 0.96 42.65 29.54 68.60 2.03 44.68 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 6 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.56 -31.23 8.26 25.60 0.21 -31.02 16 8 H 0.06 3.12 7.77 -2.91 -0.02 3.10 16 9 C 0.23 11.99 0.90 -9.76 -0.01 11.98 16 10 O -0.59 -33.24 13.19 -148.98 -1.96 -35.21 16 11 C -0.12 -5.20 5.64 31.72 0.18 -5.02 16 12 C 0.06 2.34 4.07 45.41 0.18 2.53 16 13 H 0.08 3.01 8.14 -2.38 -0.02 2.99 16 14 C -0.13 -3.76 6.46 31.72 0.20 -3.56 16 15 C -0.12 -3.01 7.07 31.96 0.23 -2.78 16 16 C 0.02 0.81 6.72 86.73 0.58 1.39 16 17 N -0.53 -22.29 5.76 -847.27 -4.88 -27.17 16 18 C 0.04 2.16 5.51 87.13 0.48 2.64 16 19 H 0.27 14.21 8.31 -92.71 -0.77 13.44 16 20 H 0.38 21.65 6.93 -74.06 -0.51 21.13 16 21 H 0.07 3.07 7.19 -2.39 -0.02 3.06 16 22 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 23 H 0.07 1.92 7.30 -2.39 -0.02 1.90 16 24 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 25 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.09 1.91 8.14 -2.38 -0.02 1.89 16 27 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 28 H 0.04 1.31 7.08 -2.39 -0.02 1.29 16 29 H 0.05 2.71 7.77 -2.39 -0.02 2.69 16 30 H 0.03 1.42 6.97 -2.39 -0.02 1.41 16 Total: -1.00 -59.90 238.64 -1.47 -61.37 By element: Atomic # 1 Polarization: 27.97 SS G_CDS: 0.61 Total: 28.58 kcal Atomic # 6 Polarization: -24.43 SS G_CDS: 2.51 Total: -21.92 kcal Atomic # 7 Polarization: -72.84 SS G_CDS: -4.65 Total: -77.49 kcal Atomic # 8 Polarization: -33.24 SS G_CDS: -1.96 Total: -35.21 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -59.90 -1.47 -61.37 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260722374.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.953 kcal (2) G-P(sol) polarization free energy of solvation -59.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds