Wall clock time and date at job start Mon Mar 30 2020 02:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 C 1.50699 * 109.47078 * 240.00010 * 2 1 3 6 6 N 1.28639 * 122.93943 * 0.02679 * 5 2 1 7 7 C 1.47600 * 108.54978 * 180.38449 * 6 5 2 8 8 C 1.54852 * 101.89509 * 14.95229 * 7 6 5 9 9 H 1.09005 * 111.07679 * 94.73481 * 8 7 6 10 10 C 1.50703 * 111.07784 * 218.73472 * 8 7 6 11 11 H 1.07989 * 119.99728 * 0.02562 * 10 8 7 12 12 C 1.37882 * 119.99616 * 179.97438 * 10 8 7 13 13 N 1.31512 * 120.00328 * 0.02562 * 12 10 8 14 14 Si 1.86800 * 119.99362 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.46989 * 60.00908 * 14 12 10 16 16 H 1.48503 * 109.46544 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47536 * 300.00145 * 14 12 10 18 18 O 1.34595 * 122.93885 * 179.73308 * 5 2 1 19 19 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 20 20 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 21 21 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 23 23 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 24 24 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 25 25 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 26 26 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 27 27 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 28 28 H 1.09002 * 110.94470 * 133.10194 * 7 6 5 29 29 H 1.08993 * 110.94725 * 256.80240 * 7 6 5 30 30 H 0.96993 * 119.99947 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 2.0323 -0.7104 -1.2305 6 7 1.2476 -1.2196 -2.1135 7 6 2.0699 -1.8407 -3.1701 8 6 3.4612 -1.9083 -2.4935 9 1 3.6225 -2.8792 -2.0249 10 6 4.5585 -1.5963 -3.4783 11 1 4.3136 -1.3658 -4.5044 12 6 5.8751 -1.6042 -3.0687 13 7 6.1732 -1.8845 -1.8188 14 14 7.2352 -1.2182 -4.2895 15 1 7.0374 0.1487 -4.8349 16 1 8.5507 -1.2928 -3.6046 17 1 7.1988 -2.2042 -5.3993 18 8 3.3412 -0.8626 -1.5046 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 1.6768 1.9562 0.8900 23 1 3.1300 1.4424 0.0005 24 1 1.6767 1.9563 -0.8900 25 1 1.6767 -1.7489 1.2492 26 1 3.1300 -0.7217 1.2490 27 1 1.6767 -0.2075 2.1393 28 1 1.7051 -2.8391 -3.4115 29 1 2.0998 -1.2126 -4.0604 30 1 7.0994 -1.8904 -1.5308 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260727711.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:13 Heat of formation + Delta-G solvation = -55.431343 kcal Electronic energy + Delta-G solvation = -12926.849442 eV Core-core repulsion = 10721.263268 eV Total energy + Delta-G solvation = -2205.586174 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.73330 -37.56206 -34.93907 -34.07868 -30.88910 -28.17114 -28.08742 -26.88891 -23.24577 -23.05920 -19.59579 -18.96405 -17.26115 -16.91156 -16.64018 -15.53156 -15.08715 -14.90698 -14.55065 -14.00573 -13.69239 -13.42729 -12.95130 -12.93759 -12.85105 -12.56432 -12.51932 -12.18040 -12.05410 -11.90757 -11.68315 -11.47132 -10.85395 -10.80088 -9.74068 -8.35062 -6.60298 1.36535 1.38091 1.42577 1.48864 2.30491 2.62170 3.10555 3.45877 4.00883 4.04927 4.11403 4.24732 4.40220 4.62334 4.78473 4.80049 4.81092 4.88992 4.98437 5.01707 5.10954 5.20978 5.38213 5.40268 5.51830 5.52058 5.74245 6.01372 6.53155 7.09725 7.19661 8.73547 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.051346 B = 0.010538 C = 0.009714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.193402 B = 2656.378620 C = 2881.697905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.002 4.002 3 C -0.132 4.132 4 C -0.132 4.132 5 C 0.289 3.711 6 N -0.584 5.584 7 C 0.004 3.996 8 C 0.175 3.825 9 H 0.021 0.979 10 C -0.559 4.559 11 H 0.072 0.928 12 C 0.026 3.974 13 N -0.898 5.898 14 Si 0.975 3.025 15 H -0.268 1.268 16 H -0.276 1.276 17 H -0.260 1.260 18 O -0.354 6.354 19 H 0.052 0.948 20 H 0.095 0.905 21 H 0.051 0.949 22 H 0.103 0.897 23 H 0.042 0.958 24 H 0.051 0.949 25 H 0.049 0.951 26 H 0.041 0.959 27 H 0.104 0.896 28 H 0.088 0.912 29 H 0.072 0.928 30 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.770 4.409 4.669 9.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.003 4.003 3 C -0.190 4.190 4 C -0.190 4.190 5 C 0.064 3.936 6 N -0.322 5.322 7 C -0.125 4.125 8 C 0.121 3.879 9 H 0.039 0.961 10 C -0.596 4.596 11 H 0.090 0.910 12 C -0.177 4.177 13 N -0.534 5.534 14 Si 0.798 3.202 15 H -0.193 1.193 16 H -0.201 1.201 17 H -0.185 1.185 18 O -0.257 6.257 19 H 0.072 0.928 20 H 0.113 0.887 21 H 0.070 0.930 22 H 0.121 0.879 23 H 0.061 0.939 24 H 0.070 0.930 25 H 0.068 0.932 26 H 0.060 0.940 27 H 0.123 0.877 28 H 0.106 0.894 29 H 0.091 0.909 30 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.272 4.323 4.606 9.633 hybrid contribution 1.706 -0.336 -0.879 1.948 sum -5.566 3.987 3.728 7.795 Atomic orbital electron populations 1.21637 0.90271 1.02489 1.02921 1.19646 0.97774 0.95291 0.87602 1.21804 1.00765 0.92955 1.03475 1.21815 1.00768 1.00161 0.96298 1.26438 0.81911 0.90339 0.94883 1.74537 1.31457 1.21347 1.04855 1.23891 0.91512 1.00321 0.96822 1.21611 0.94632 0.86193 0.85509 0.96104 1.21290 0.91102 1.51868 0.95326 0.91001 1.26096 1.01668 0.92653 0.97327 1.70120 1.20048 1.45621 1.17603 0.85368 0.77013 0.79295 0.78557 1.19339 1.20082 1.18467 1.87318 1.24114 1.54683 1.59550 0.92848 0.88652 0.92980 0.87871 0.93904 0.92954 0.93189 0.93957 0.87741 0.89356 0.90940 0.92067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.11 7.80 71.98 0.56 -2.55 16 2 C 0.00 -0.06 0.99 -52.93 -0.05 -0.11 16 3 C -0.13 -3.88 8.45 71.98 0.61 -3.27 16 4 C -0.13 -3.96 8.46 71.98 0.61 -3.35 16 5 C 0.29 13.05 6.19 88.58 0.55 13.60 16 6 N -0.58 -26.67 10.76 -449.43 -4.84 -31.51 16 7 C 0.00 0.19 7.68 86.80 0.67 0.86 16 8 C 0.18 9.75 3.49 30.48 0.11 9.86 16 9 H 0.02 1.27 8.14 -2.38 -0.02 1.25 16 10 C -0.56 -32.20 8.83 25.60 0.23 -31.97 16 11 H 0.07 3.97 7.61 -2.92 -0.02 3.94 16 12 C 0.03 1.49 5.46 84.66 0.46 1.96 16 13 N -0.90 -53.41 13.23 21.45 0.28 -53.13 16 14 Si 0.98 43.28 29.54 68.60 2.03 45.31 16 15 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 16 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 17 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 18 O -0.35 -19.41 10.82 -78.60 -0.85 -20.26 16 19 H 0.05 1.52 8.13 -2.39 -0.02 1.50 16 20 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 21 H 0.05 1.48 8.13 -2.38 -0.02 1.46 16 22 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 23 H 0.04 1.45 8.14 -2.39 -0.02 1.44 16 24 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.09 3.88 8.14 -2.39 -0.02 3.86 16 29 H 0.07 3.45 7.77 -2.39 -0.02 3.43 16 30 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -66.64 256.24 1.45 -65.19 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: 1.10 Total: 9.38 kcal Atomic # 6 Polarization: -18.72 SS G_CDS: 3.74 Total: -14.98 kcal Atomic # 7 Polarization: -80.08 SS G_CDS: -4.55 Total: -84.64 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: -0.85 Total: -20.26 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -66.64 1.45 -65.19 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260727711.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.760 kcal (2) G-P(sol) polarization free energy of solvation -66.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds