Wall clock time and date at job start Mon Mar 30 2020 02:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52996 * 109.47363 * 2 1 4 4 C 1.50700 * 109.47372 * 179.97438 * 3 2 1 5 5 N 1.28634 * 122.93826 * 0.02562 * 4 3 2 6 6 C 1.47606 * 108.54674 * 179.59127 * 5 4 3 7 7 H 1.09001 * 110.94594 * 103.19836 * 6 5 4 8 8 C 1.53002 * 110.94266 * 226.89219 * 6 5 4 9 9 C 1.50694 * 109.47403 * 293.54715 * 8 6 5 10 10 H 1.07998 * 119.99999 * 0.02562 * 9 8 6 11 11 C 1.37884 * 120.00053 * 179.97438 * 9 8 6 12 12 N 1.31515 * 119.99684 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00081 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46948 * 90.00343 * 13 11 9 15 15 H 1.48500 * 109.47084 * 210.00317 * 13 11 9 16 16 H 1.48506 * 109.47131 * 330.00437 * 13 11 9 17 17 C 1.54847 * 101.89333 * 345.04490 * 6 5 4 18 18 O 1.34601 * 122.93766 * 179.97438 * 4 3 2 19 19 H 1.09003 * 109.47226 * 60.00894 * 1 2 3 20 20 H 1.09002 * 109.47534 * 180.02562 * 1 2 3 21 21 H 1.08996 * 109.47431 * 300.00531 * 1 2 3 22 22 H 1.08996 * 109.47431 * 239.99469 * 2 1 3 23 23 H 1.09011 * 109.47230 * 119.99480 * 2 1 3 24 24 H 1.08996 * 109.47281 * 59.99377 * 3 2 1 25 25 H 1.09009 * 109.46876 * 299.99514 * 3 2 1 26 26 H 1.09006 * 109.47220 * 53.55076 * 8 6 5 27 27 H 1.08998 * 109.46835 * 173.54527 * 8 6 5 28 28 H 0.97003 * 119.99700 * 179.97438 * 12 11 9 29 29 H 1.08999 * 111.07492 * 141.22536 * 17 6 5 30 30 H 1.09002 * 111.07341 * 265.25706 * 17 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 7 4.2464 0.3629 0.0006 6 6 5.6761 0.7297 -0.0087 7 1 6.1168 0.6050 0.9804 8 6 6.4427 -0.0839 -1.0533 9 6 6.4559 -1.5355 -0.6487 10 1 5.9661 -1.8467 0.2621 11 6 7.0924 -2.4665 -1.4420 12 7 7.6884 -2.0876 -2.5514 13 14 7.1094 -4.2658 -0.9402 14 1 5.9248 -4.9515 -1.5162 15 1 8.3484 -4.9091 -1.4463 16 1 7.0684 -4.3671 0.5408 17 6 5.6192 2.2256 -0.4047 18 8 4.2788 2.5721 0.0003 19 1 -0.3634 0.5137 -0.8901 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 1.8933 -0.5139 -0.8899 23 1 1.8933 -0.5138 0.8901 24 1 1.6766 1.9563 0.8899 25 1 1.6767 1.9563 -0.8901 26 1 5.9555 0.0186 -2.0230 27 1 7.4666 0.2839 -1.1205 28 1 8.1365 -2.7425 -3.1093 29 1 6.3583 2.8057 0.1477 30 1 5.7482 2.3516 -1.4797 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260748151.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:07 Heat of formation + Delta-G solvation = -33.595064 kcal Electronic energy + Delta-G solvation = -12416.626869 eV Core-core repulsion = 10211.987587 eV Total energy + Delta-G solvation = -2204.639282 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.53907 -35.06182 -33.99962 -32.26666 -30.56176 -27.70319 -26.29584 -23.28510 -21.78602 -20.44028 -19.26136 -16.58264 -16.04807 -15.64785 -15.07633 -14.53859 -14.25292 -13.51391 -12.82660 -12.55088 -12.47121 -11.70228 -11.59987 -11.42835 -11.17010 -11.02710 -10.94674 -10.54105 -10.46606 -10.40153 -9.60047 -9.47938 -9.00452 -8.36186 -8.32667 -5.95942 -3.95236 2.78034 3.36865 3.42148 3.46737 3.73893 4.50566 4.73381 5.16939 5.22188 5.35277 5.39558 5.44406 5.53798 5.66786 5.77957 5.84295 5.92785 6.11069 6.24338 6.38900 6.40052 6.62199 6.68334 7.06349 7.53589 7.69247 8.02243 8.37567 8.49170 9.09290 9.67073 11.16114 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.032419 B = 0.009846 C = 0.007961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.479534 B = 2843.035707 C = 3516.122144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.113 4.113 3 C -0.038 4.038 4 C 0.256 3.744 5 N -0.488 5.488 6 C 0.029 3.971 7 H 0.087 0.913 8 C 0.040 3.960 9 C -0.499 4.499 10 H 0.060 0.940 11 C 0.052 3.948 12 N -0.902 5.902 13 Si 0.895 3.105 14 H -0.281 1.281 15 H -0.288 1.288 16 H -0.274 1.274 17 C 0.018 3.982 18 O -0.362 6.362 19 H 0.052 0.948 20 H 0.056 0.944 21 H 0.051 0.949 22 H 0.075 0.925 23 H 0.072 0.928 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.020 0.980 27 H 0.025 0.975 28 H 0.259 0.741 29 H 0.099 0.901 30 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.896 7.021 4.305 12.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.151 4.151 3 C -0.076 4.076 4 C 0.028 3.972 5 N -0.221 5.221 6 C -0.080 4.080 7 H 0.105 0.895 8 C 0.003 3.997 9 C -0.537 4.537 10 H 0.078 0.922 11 C -0.148 4.148 12 N -0.542 5.542 13 Si 0.723 3.277 14 H -0.207 1.207 15 H -0.214 1.214 16 H -0.199 1.199 17 C -0.058 4.058 18 O -0.267 6.267 19 H 0.071 0.929 20 H 0.075 0.925 21 H 0.070 0.930 22 H 0.094 0.906 23 H 0.091 0.909 24 H 0.103 0.897 25 H 0.104 0.896 26 H 0.038 0.962 27 H 0.043 0.957 28 H 0.069 0.931 29 H 0.117 0.883 30 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -9.830 6.244 4.221 12.386 hybrid contribution 0.635 -0.278 0.079 0.697 sum -9.195 5.966 4.300 11.774 Atomic orbital electron populations 1.21790 0.95941 1.01749 1.01360 1.21335 0.94531 0.94752 1.04465 1.20202 0.84479 0.99499 1.03440 1.25627 0.95914 0.81988 0.93687 1.74801 1.03841 1.25399 1.18096 1.23920 0.90670 0.90923 1.02509 0.89538 1.19050 0.93849 0.94677 0.92140 1.21088 1.32909 0.91854 1.07851 0.92186 1.25010 0.95649 0.99009 0.95084 1.69961 1.36518 1.34152 1.13598 0.86543 0.77246 0.85144 0.78761 1.20708 1.21405 1.19919 1.24735 0.81597 0.98476 1.01026 1.86832 1.22578 1.34191 1.83080 0.92892 0.92509 0.92988 0.90601 0.90897 0.89652 0.89553 0.96189 0.95686 0.93109 0.88324 0.90315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.91 37.15 0.37 -1.20 16 2 C -0.11 -1.55 5.26 -26.74 -0.14 -1.69 16 3 C -0.04 -0.52 5.84 -27.89 -0.16 -0.68 16 4 C 0.26 4.70 7.69 -13.62 -0.10 4.59 16 5 N -0.49 -10.65 10.25 -50.61 -0.52 -11.17 16 6 C 0.03 0.64 3.71 -66.35 -0.25 0.40 16 7 H 0.09 1.90 8.14 -51.93 -0.42 1.47 16 8 C 0.04 1.06 4.67 -27.88 -0.13 0.93 16 9 C -0.50 -14.53 8.92 -34.44 -0.31 -14.84 16 10 H 0.06 1.76 7.74 -52.49 -0.41 1.35 16 11 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 12 N -0.90 -27.55 13.29 55.43 0.74 -26.81 16 13 Si 0.89 22.40 29.54 -169.99 -5.02 17.38 16 14 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 15 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 16 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 17 C 0.02 0.34 7.74 38.13 0.30 0.63 16 18 O -0.36 -6.65 11.17 -15.58 -0.17 -6.82 16 19 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 20 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 21 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 22 H 0.08 1.20 8.13 -51.93 -0.42 0.78 16 23 H 0.07 1.09 8.13 -51.92 -0.42 0.67 16 24 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.09 1.02 8.14 -51.92 -0.42 0.60 16 26 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.02 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 29 H 0.10 1.53 8.14 -51.93 -0.42 1.10 16 30 H 0.08 1.43 7.92 -51.93 -0.41 1.02 16 LS Contribution 258.26 15.07 3.89 3.89 Total: -1.00 -31.97 258.26 -6.21 -38.18 By element: Atomic # 1 Polarization: 0.36 SS G_CDS: -4.60 Total: -4.24 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: -0.53 Total: -10.41 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: 0.22 Total: -37.98 kcal Atomic # 8 Polarization: -6.65 SS G_CDS: -0.17 Total: -6.82 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -31.97 -6.21 -38.18 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260748151.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.586 kcal (2) G-P(sol) polarization free energy of solvation -31.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds