Wall clock time and date at job start Mon Mar 30 2020 02:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52996 * 109.47363 * 2 1 4 4 C 1.50700 * 109.47372 * 179.97438 * 3 2 1 5 5 N 1.28634 * 122.93826 * 0.02562 * 4 3 2 6 6 C 1.47606 * 108.54674 * 179.59127 * 5 4 3 7 7 H 1.09001 * 110.94594 * 103.19836 * 6 5 4 8 8 C 1.53002 * 110.94266 * 226.89219 * 6 5 4 9 9 C 1.50694 * 109.47403 * 293.54715 * 8 6 5 10 10 H 1.07998 * 119.99999 * 0.02562 * 9 8 6 11 11 C 1.37884 * 120.00053 * 179.97438 * 9 8 6 12 12 N 1.31515 * 119.99684 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00081 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46948 * 90.00343 * 13 11 9 15 15 H 1.48500 * 109.47084 * 210.00317 * 13 11 9 16 16 H 1.48506 * 109.47131 * 330.00437 * 13 11 9 17 17 C 1.54847 * 101.89333 * 345.04490 * 6 5 4 18 18 O 1.34601 * 122.93766 * 179.97438 * 4 3 2 19 19 H 1.09003 * 109.47226 * 60.00894 * 1 2 3 20 20 H 1.09002 * 109.47534 * 180.02562 * 1 2 3 21 21 H 1.08996 * 109.47431 * 300.00531 * 1 2 3 22 22 H 1.08996 * 109.47431 * 239.99469 * 2 1 3 23 23 H 1.09011 * 109.47230 * 119.99480 * 2 1 3 24 24 H 1.08996 * 109.47281 * 59.99377 * 3 2 1 25 25 H 1.09009 * 109.46876 * 299.99514 * 3 2 1 26 26 H 1.09006 * 109.47220 * 53.55076 * 8 6 5 27 27 H 1.08998 * 109.46835 * 173.54527 * 8 6 5 28 28 H 0.97003 * 119.99700 * 179.97438 * 12 11 9 29 29 H 1.08999 * 111.07492 * 141.22536 * 17 6 5 30 30 H 1.09002 * 111.07341 * 265.25706 * 17 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 7 4.2464 0.3629 0.0006 6 6 5.6761 0.7297 -0.0087 7 1 6.1168 0.6050 0.9804 8 6 6.4427 -0.0839 -1.0533 9 6 6.4559 -1.5355 -0.6487 10 1 5.9661 -1.8467 0.2621 11 6 7.0924 -2.4665 -1.4420 12 7 7.6884 -2.0876 -2.5514 13 14 7.1094 -4.2658 -0.9402 14 1 5.9248 -4.9515 -1.5162 15 1 8.3484 -4.9091 -1.4463 16 1 7.0684 -4.3671 0.5408 17 6 5.6192 2.2256 -0.4047 18 8 4.2788 2.5721 0.0003 19 1 -0.3634 0.5137 -0.8901 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 1.8933 -0.5139 -0.8899 23 1 1.8933 -0.5138 0.8901 24 1 1.6766 1.9563 0.8899 25 1 1.6767 1.9563 -0.8901 26 1 5.9555 0.0186 -2.0230 27 1 7.4666 0.2839 -1.1205 28 1 8.1365 -2.7425 -3.1093 29 1 6.3583 2.8057 0.1477 30 1 5.7482 2.3516 -1.4797 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260748151.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:07 Heat of formation + Delta-G solvation = -57.127222 kcal Electronic energy + Delta-G solvation = -12417.647300 eV Core-core repulsion = 10211.987587 eV Total energy + Delta-G solvation = -2205.659712 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.06808 -36.20000 -35.92263 -34.19245 -32.12634 -29.40482 -27.70417 -25.27868 -22.92626 -22.22593 -20.66710 -18.48360 -17.91303 -17.17063 -16.47342 -16.32744 -15.65062 -14.81289 -14.66372 -14.01272 -13.66381 -13.56217 -13.35345 -13.03617 -12.63467 -12.48247 -12.42293 -12.26107 -11.96513 -11.67290 -11.51998 -11.35867 -10.86893 -10.58182 -9.98275 -8.21605 -6.29027 1.30436 1.36963 1.39016 1.50092 2.34794 2.40085 3.10706 3.30984 3.76016 4.00148 4.10969 4.22100 4.32157 4.43776 4.58997 4.67719 4.78283 4.78607 4.96725 5.02051 5.29883 5.33024 5.37002 5.46532 5.57260 5.66912 5.75382 6.22281 6.81316 6.92257 7.37795 8.90705 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.032419 B = 0.009846 C = 0.007961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.479534 B = 2843.035707 C = 3516.122144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.110 4.110 3 C -0.037 4.037 4 C 0.270 3.730 5 N -0.540 5.540 6 C 0.028 3.972 7 H 0.082 0.918 8 C 0.049 3.951 9 C -0.517 4.517 10 H 0.052 0.948 11 C -0.002 4.002 12 N -0.936 5.936 13 Si 0.964 3.036 14 H -0.276 1.276 15 H -0.278 1.278 16 H -0.266 1.266 17 C 0.026 3.974 18 O -0.357 6.357 19 H 0.065 0.935 20 H 0.056 0.944 21 H 0.070 0.930 22 H 0.044 0.956 23 H 0.053 0.947 24 H 0.118 0.882 25 H 0.111 0.889 26 H -0.011 1.011 27 H 0.010 0.990 28 H 0.263 0.737 29 H 0.132 0.868 30 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.273 7.515 5.118 14.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.148 4.148 3 C -0.075 4.075 4 C 0.043 3.957 5 N -0.275 5.275 6 C -0.082 4.082 7 H 0.100 0.900 8 C 0.011 3.989 9 C -0.556 4.556 10 H 0.070 0.930 11 C -0.199 4.199 12 N -0.577 5.577 13 Si 0.789 3.211 14 H -0.201 1.201 15 H -0.203 1.203 16 H -0.191 1.191 17 C -0.050 4.050 18 O -0.262 6.262 19 H 0.084 0.916 20 H 0.075 0.925 21 H 0.089 0.911 22 H 0.063 0.937 23 H 0.072 0.928 24 H 0.136 0.864 25 H 0.130 0.870 26 H 0.007 0.993 27 H 0.029 0.971 28 H 0.072 0.928 29 H 0.150 0.850 30 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.215 6.756 5.042 14.030 hybrid contribution 1.031 -0.372 -0.186 1.112 sum -10.184 6.383 4.856 12.963 Atomic orbital electron populations 1.21731 0.92968 1.02373 1.02951 1.21276 0.96999 0.94511 1.02051 1.20509 0.81003 0.99845 1.06108 1.26534 0.97758 0.81123 0.90292 1.74805 1.03540 1.27167 1.21950 1.23655 0.91025 0.92781 1.00702 0.90011 1.18832 0.93380 0.94569 0.92074 1.21386 1.32916 0.93527 1.07734 0.92957 1.25910 0.95111 1.03855 0.94996 1.70075 1.37152 1.35834 1.14601 0.85461 0.77629 0.79274 0.78750 1.20128 1.20323 1.19081 1.24727 0.82487 0.96221 1.01588 1.86846 1.22465 1.34052 1.82791 0.91571 0.92478 0.91057 0.93703 0.92772 0.86379 0.87048 0.99293 0.97132 0.92787 0.84985 0.90391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 9.91 71.98 0.71 -1.88 16 2 C -0.11 -2.90 5.26 30.59 0.16 -2.74 16 3 C -0.04 -0.90 5.84 29.85 0.17 -0.73 16 4 C 0.27 9.55 7.69 88.58 0.68 10.23 16 5 N -0.54 -23.77 10.25 -429.27 -4.40 -28.17 16 6 C 0.03 1.25 3.71 45.41 0.17 1.41 16 7 H 0.08 3.64 8.14 -2.39 -0.02 3.63 16 8 C 0.05 2.67 4.67 29.85 0.14 2.81 16 9 C -0.52 -30.95 8.92 25.60 0.23 -30.72 16 10 H 0.05 3.14 7.74 -2.91 -0.02 3.11 16 11 C 0.00 -0.11 5.46 84.66 0.46 0.36 16 12 N -0.94 -58.18 13.29 21.45 0.28 -57.90 16 13 Si 0.96 46.36 29.54 68.60 2.03 48.39 16 14 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 15 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 16 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 17 C 0.03 0.93 7.74 72.61 0.56 1.50 16 18 O -0.36 -12.37 11.17 -78.67 -0.88 -13.25 16 19 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 20 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 21 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 22 H 0.04 1.43 8.13 -2.39 -0.02 1.41 16 23 H 0.05 1.60 8.13 -2.38 -0.02 1.58 16 24 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 25 H 0.11 2.25 8.14 -2.38 -0.02 2.23 16 26 H -0.01 -0.68 8.14 -2.38 -0.02 -0.70 16 27 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 29 H 0.13 3.79 8.14 -2.39 -0.02 3.77 16 30 H 0.08 2.79 7.92 -2.39 -0.02 2.77 16 Total: -1.00 -69.93 258.26 1.42 -68.51 By element: Atomic # 1 Polarization: 1.08 SS G_CDS: 1.10 Total: 2.18 kcal Atomic # 6 Polarization: -23.06 SS G_CDS: 3.29 Total: -19.77 kcal Atomic # 7 Polarization: -81.95 SS G_CDS: -4.11 Total: -86.07 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: -0.88 Total: -13.25 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal Total: -69.93 1.42 -68.51 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260748151.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.384 kcal (2) G-P(sol) polarization free energy of solvation -69.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds