Wall clock time and date at job start Mon Mar 30 2020 02:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47230 * 2 1 4 4 C 1.52999 * 109.47526 * 119.99754 * 2 1 3 5 5 C 1.50705 * 109.46645 * 65.00200 * 4 2 1 6 6 N 1.28638 * 122.94242 * 359.97379 * 5 4 2 7 7 C 1.47599 * 108.54931 * 179.59163 * 6 5 4 8 8 C 1.54855 * 101.89376 * 345.05049 * 7 6 5 9 9 H 1.08995 * 111.07649 * 265.21598 * 8 7 6 10 10 C 1.50706 * 111.07449 * 141.22134 * 8 7 6 11 11 H 1.07999 * 120.00196 * 0.02562 * 10 8 7 12 12 C 1.37879 * 119.99394 * 179.97438 * 10 8 7 13 13 N 1.31514 * 120.00338 * 359.97438 * 12 10 8 14 14 Si 1.86800 * 119.99426 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47361 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47264 * 120.00115 * 14 12 10 17 17 H 1.48500 * 109.46969 * 239.99720 * 14 12 10 18 18 O 1.34595 * 122.93553 * 179.97438 * 5 4 2 19 19 H 1.08997 * 109.47134 * 299.99717 * 1 2 3 20 20 H 1.08998 * 109.47197 * 60.00462 * 1 2 3 21 21 H 1.09005 * 109.46667 * 179.97438 * 1 2 3 22 22 H 1.09006 * 109.47175 * 240.00054 * 2 1 3 23 23 H 1.09001 * 109.47553 * 180.02562 * 3 2 1 24 24 H 1.09006 * 109.47238 * 300.00057 * 3 2 1 25 25 H 1.09003 * 109.47468 * 59.99816 * 3 2 1 26 26 H 1.08996 * 109.47131 * 305.00518 * 4 2 1 27 27 H 1.08997 * 109.47500 * 184.99600 * 4 2 1 28 28 H 1.09001 * 110.94723 * 226.89927 * 7 6 5 29 29 H 1.08998 * 110.94334 * 103.19844 * 7 6 5 30 30 H 0.96996 * 119.99730 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6414 -2.1733 1.1888 6 7 0.9733 -2.6752 0.2108 7 6 0.7678 -4.1133 0.4716 8 6 1.7909 -4.3820 1.6026 9 1 2.7313 -4.7575 1.1994 10 6 1.2275 -5.3309 2.6289 11 1 0.2288 -5.7244 2.5098 12 6 1.9876 -5.6976 3.7193 13 7 3.2043 -5.2197 3.8634 14 14 1.2895 -6.8744 4.9910 15 1 -0.0888 -7.2650 4.6001 16 1 2.1451 -8.0858 5.0668 17 1 1.2572 -6.2075 6.3174 18 8 1.9534 -3.0585 2.1535 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5137 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8934 -0.5139 -0.8900 23 1 3.1300 1.4425 -0.0005 24 1 1.6767 1.9564 -0.8900 25 1 1.6767 1.9564 0.8900 26 1 1.6055 -0.2617 2.1369 27 1 3.1264 -0.6443 1.2951 28 1 0.9998 -4.7068 -0.4127 29 1 -0.2494 -4.3060 0.8126 30 1 3.7391 -5.4780 4.6303 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260756442.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:19 Heat of formation + Delta-G solvation = -32.820401 kcal Electronic energy + Delta-G solvation = -12632.314784 eV Core-core repulsion = 10427.709095 eV Total energy + Delta-G solvation = -2204.605690 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.76209 -36.06541 -32.91988 -32.08193 -29.80660 -27.05099 -26.79074 -24.29172 -21.29586 -20.34900 -18.54391 -16.87277 -15.64668 -15.14544 -14.77486 -14.36801 -13.68267 -13.39444 -12.88036 -12.28510 -12.01059 -11.78713 -11.71646 -11.54822 -11.12994 -11.03067 -10.72041 -10.58229 -10.51439 -10.32925 -9.85104 -9.47661 -8.82979 -8.76047 -7.75130 -6.23800 -4.39503 3.16483 3.20927 3.28091 3.32622 4.26200 4.40062 5.03364 5.13341 5.24315 5.46841 5.58134 5.80877 5.90530 5.95956 6.10619 6.13737 6.18707 6.30205 6.35852 6.37580 6.54721 6.70042 6.78354 7.02814 7.37360 7.62361 7.67944 8.06017 8.67521 9.00285 9.34107 10.83952 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.067257 B = 0.008469 C = 0.008059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 416.211696 B = 3305.526202 C = 3473.657479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.081 4.081 3 C -0.147 4.147 4 C -0.045 4.045 5 C 0.289 3.711 6 N -0.576 5.576 7 C -0.002 4.002 8 C 0.181 3.819 9 H 0.051 0.949 10 C -0.532 4.532 11 H 0.070 0.930 12 C 0.077 3.923 13 N -0.862 5.862 14 Si 0.902 3.098 15 H -0.269 1.269 16 H -0.280 1.280 17 H -0.280 1.280 18 O -0.333 6.333 19 H 0.042 0.958 20 H 0.044 0.956 21 H 0.083 0.917 22 H 0.077 0.923 23 H 0.052 0.948 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.784 8.193 -4.483 9.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.099 4.099 3 C -0.205 4.205 4 C -0.083 4.083 5 C 0.065 3.935 6 N -0.318 5.318 7 C -0.131 4.131 8 C 0.127 3.873 9 H 0.069 0.931 10 C -0.569 4.569 11 H 0.088 0.912 12 C -0.130 4.130 13 N -0.498 5.498 14 Si 0.729 3.271 15 H -0.194 1.194 16 H -0.206 1.206 17 H -0.206 1.206 18 O -0.235 6.235 19 H 0.061 0.939 20 H 0.063 0.937 21 H 0.102 0.898 22 H 0.096 0.904 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.104 0.896 27 H 0.105 0.895 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.938 8.348 -4.911 9.877 hybrid contribution -0.024 -1.165 1.328 1.767 sum -1.962 7.182 -3.583 8.263 Atomic orbital electron populations 1.21959 0.94890 1.03964 0.99991 1.20875 0.96690 0.94634 0.97717 1.21873 1.00741 0.96335 1.01511 1.20327 1.01624 0.86688 0.99650 1.25470 0.88984 0.94205 0.84890 1.74493 1.21804 1.08988 1.26470 1.23961 1.00881 0.89866 0.98437 1.21726 0.94679 0.79329 0.91535 0.93120 1.21049 1.01877 1.25377 1.08600 0.91177 1.25178 0.94534 0.95369 0.97943 1.70022 1.08773 1.41906 1.29089 0.86383 0.79428 0.80322 0.81009 1.19350 1.20553 1.20567 1.87367 1.81431 1.17957 1.36743 0.93904 0.93730 0.89792 0.90422 0.92860 0.92790 0.92833 0.89610 0.89514 0.90887 0.90901 0.92445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 8.94 37.16 0.33 -1.88 16 2 C -0.08 -1.16 2.58 -90.62 -0.23 -1.39 16 3 C -0.15 -1.66 9.19 37.16 0.34 -1.32 16 4 C -0.04 -0.75 5.32 -27.88 -0.15 -0.89 16 5 C 0.29 6.38 7.37 -13.61 -0.10 6.28 16 6 N -0.58 -12.66 8.71 -56.98 -0.50 -13.16 16 7 C 0.00 -0.05 7.68 -2.46 -0.02 -0.07 16 8 C 0.18 4.87 3.48 -26.90 -0.09 4.77 16 9 H 0.05 1.44 8.14 -51.93 -0.42 1.02 16 10 C -0.53 -15.00 8.83 -34.44 -0.30 -15.31 16 11 H 0.07 1.92 7.61 -52.49 -0.40 1.52 16 12 C 0.08 2.16 5.46 -17.82 -0.10 2.06 16 13 N -0.86 -25.25 13.23 55.43 0.73 -24.52 16 14 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 15 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 16 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 O -0.33 -8.92 10.82 -15.56 -0.17 -9.09 16 19 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 20 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 21 H 0.08 1.47 5.87 -51.93 -0.30 1.17 16 22 H 0.08 1.21 7.99 -51.93 -0.41 0.79 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 27 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 28 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 29 H 0.07 1.69 7.77 -51.93 -0.40 1.28 16 30 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 253.29 15.07 3.82 3.82 Total: -1.00 -30.19 253.29 -5.92 -36.11 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: -4.46 Total: -1.43 kcal Atomic # 6 Polarization: -7.43 SS G_CDS: -0.32 Total: -7.76 kcal Atomic # 7 Polarization: -37.91 SS G_CDS: 0.24 Total: -37.68 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: -0.17 Total: -9.09 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -30.19 -5.92 -36.11 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260756442.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.288 kcal (2) G-P(sol) polarization free energy of solvation -30.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds