Wall clock time and date at job start Mon Mar 30 2020 02:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47230 * 2 1 4 4 C 1.52999 * 109.47526 * 119.99754 * 2 1 3 5 5 C 1.50705 * 109.46645 * 65.00200 * 4 2 1 6 6 N 1.28638 * 122.94242 * 359.97379 * 5 4 2 7 7 C 1.47599 * 108.54931 * 179.59163 * 6 5 4 8 8 C 1.54855 * 101.89376 * 345.05049 * 7 6 5 9 9 H 1.08995 * 111.07649 * 265.21598 * 8 7 6 10 10 C 1.50706 * 111.07449 * 141.22134 * 8 7 6 11 11 H 1.07999 * 120.00196 * 0.02562 * 10 8 7 12 12 C 1.37879 * 119.99394 * 179.97438 * 10 8 7 13 13 N 1.31514 * 120.00338 * 359.97438 * 12 10 8 14 14 Si 1.86800 * 119.99426 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47361 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47264 * 120.00115 * 14 12 10 17 17 H 1.48500 * 109.46969 * 239.99720 * 14 12 10 18 18 O 1.34595 * 122.93553 * 179.97438 * 5 4 2 19 19 H 1.08997 * 109.47134 * 299.99717 * 1 2 3 20 20 H 1.08998 * 109.47197 * 60.00462 * 1 2 3 21 21 H 1.09005 * 109.46667 * 179.97438 * 1 2 3 22 22 H 1.09006 * 109.47175 * 240.00054 * 2 1 3 23 23 H 1.09001 * 109.47553 * 180.02562 * 3 2 1 24 24 H 1.09006 * 109.47238 * 300.00057 * 3 2 1 25 25 H 1.09003 * 109.47468 * 59.99816 * 3 2 1 26 26 H 1.08996 * 109.47131 * 305.00518 * 4 2 1 27 27 H 1.08997 * 109.47500 * 184.99600 * 4 2 1 28 28 H 1.09001 * 110.94723 * 226.89927 * 7 6 5 29 29 H 1.08998 * 110.94334 * 103.19844 * 7 6 5 30 30 H 0.96996 * 119.99730 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6414 -2.1733 1.1888 6 7 0.9733 -2.6752 0.2108 7 6 0.7678 -4.1133 0.4716 8 6 1.7909 -4.3820 1.6026 9 1 2.7313 -4.7575 1.1994 10 6 1.2275 -5.3309 2.6289 11 1 0.2288 -5.7244 2.5098 12 6 1.9876 -5.6976 3.7193 13 7 3.2043 -5.2197 3.8634 14 14 1.2895 -6.8744 4.9910 15 1 -0.0888 -7.2650 4.6001 16 1 2.1451 -8.0858 5.0668 17 1 1.2572 -6.2075 6.3174 18 8 1.9534 -3.0585 2.1535 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5137 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8934 -0.5139 -0.8900 23 1 3.1300 1.4425 -0.0005 24 1 1.6767 1.9564 -0.8900 25 1 1.6767 1.9564 0.8900 26 1 1.6055 -0.2617 2.1369 27 1 3.1264 -0.6443 1.2951 28 1 0.9998 -4.7068 -0.4127 29 1 -0.2494 -4.3060 0.8126 30 1 3.7391 -5.4780 4.6303 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260756442.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:19 Heat of formation + Delta-G solvation = -53.958915 kcal Electronic energy + Delta-G solvation = -12633.231419 eV Core-core repulsion = 10427.709095 eV Total energy + Delta-G solvation = -2205.522324 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.64946 -37.34934 -35.00102 -33.96752 -31.57097 -28.70597 -27.85805 -26.19215 -23.25541 -21.78478 -20.10413 -18.98507 -17.35848 -16.98488 -16.68245 -15.85812 -15.31409 -14.73197 -14.39001 -13.99863 -13.65680 -13.46935 -13.16414 -12.94973 -12.87875 -12.62932 -12.46350 -12.03936 -11.80243 -11.62836 -11.46693 -11.40129 -10.86711 -10.70806 -9.66817 -8.35394 -6.60441 1.36621 1.37547 1.42681 1.52458 2.30864 2.65233 3.16578 3.50290 4.04799 4.12779 4.18963 4.34943 4.41874 4.66131 4.70985 4.77422 4.87733 4.95454 5.02894 5.14169 5.17960 5.30687 5.38452 5.52792 5.57810 5.64945 5.82352 6.03295 6.54235 7.10306 7.20088 8.73814 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.067257 B = 0.008469 C = 0.008059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 416.211696 B = 3305.526202 C = 3473.657479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.075 4.075 3 C -0.140 4.140 4 C -0.044 4.044 5 C 0.279 3.721 6 N -0.568 5.568 7 C 0.004 3.996 8 C 0.175 3.825 9 H 0.022 0.978 10 C -0.558 4.558 11 H 0.073 0.927 12 C 0.024 3.976 13 N -0.901 5.901 14 Si 0.977 3.023 15 H -0.261 1.261 16 H -0.269 1.269 17 H -0.276 1.276 18 O -0.363 6.363 19 H 0.051 0.949 20 H 0.062 0.938 21 H 0.051 0.949 22 H 0.064 0.936 23 H 0.061 0.939 24 H 0.067 0.933 25 H 0.063 0.937 26 H 0.099 0.901 27 H 0.099 0.901 28 H 0.089 0.911 29 H 0.073 0.927 30 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.380 9.079 -4.328 10.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.094 4.094 3 C -0.197 4.197 4 C -0.082 4.082 5 C 0.054 3.946 6 N -0.308 5.308 7 C -0.125 4.125 8 C 0.120 3.880 9 H 0.040 0.960 10 C -0.594 4.594 11 H 0.091 0.909 12 C -0.179 4.179 13 N -0.537 5.537 14 Si 0.800 3.200 15 H -0.185 1.185 16 H -0.194 1.194 17 H -0.201 1.201 18 O -0.266 6.266 19 H 0.070 0.930 20 H 0.081 0.919 21 H 0.070 0.930 22 H 0.082 0.918 23 H 0.080 0.920 24 H 0.086 0.914 25 H 0.082 0.918 26 H 0.117 0.883 27 H 0.118 0.882 28 H 0.107 0.893 29 H 0.091 0.909 30 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.545 9.244 -4.786 10.716 hybrid contribution 0.172 -1.389 1.216 1.854 sum -2.373 7.854 -3.570 8.948 Atomic orbital electron populations 1.21911 0.95088 1.02231 1.01384 1.20858 0.96468 0.96347 0.95722 1.21809 1.01301 0.93848 1.02760 1.20612 1.02592 0.83376 1.01575 1.26445 0.88559 0.95827 0.83737 1.74535 1.21900 1.07965 1.26362 1.23895 0.99797 0.90998 0.97844 1.21600 0.94194 0.79692 0.92498 0.96041 1.21378 1.02214 1.26399 1.09436 0.90938 1.26122 0.94722 0.97049 1.00025 1.70136 1.10142 1.43386 1.30021 0.85237 0.79007 0.78005 0.77785 1.18465 1.19438 1.20112 1.87285 1.82204 1.18530 1.38615 0.92957 0.91942 0.92963 0.91779 0.91998 0.91350 0.91797 0.88260 0.88236 0.89319 0.90913 0.92063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.09 8.94 71.98 0.64 -3.44 16 2 C -0.08 -2.01 2.58 -10.79 -0.03 -2.04 16 3 C -0.14 -2.70 9.19 71.98 0.66 -2.04 16 4 C -0.04 -1.40 5.32 29.85 0.16 -1.24 16 5 C 0.28 12.28 7.37 88.58 0.65 12.93 16 6 N -0.57 -24.90 8.71 -449.42 -3.92 -28.81 16 7 C 0.00 0.19 7.68 86.80 0.67 0.86 16 8 C 0.17 9.62 3.48 30.48 0.11 9.73 16 9 H 0.02 1.29 8.14 -2.39 -0.02 1.27 16 10 C -0.56 -31.92 8.83 25.60 0.23 -31.70 16 11 H 0.07 3.99 7.61 -2.91 -0.02 3.97 16 12 C 0.02 1.37 5.46 84.66 0.46 1.84 16 13 N -0.90 -53.56 13.23 21.45 0.28 -53.28 16 14 Si 0.98 43.18 29.54 68.60 2.03 45.20 16 15 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 16 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 17 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 18 O -0.36 -19.83 10.82 -78.60 -0.85 -20.68 16 19 H 0.05 1.31 8.14 -2.39 -0.02 1.30 16 20 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 21 H 0.05 1.77 5.87 -2.38 -0.01 1.76 16 22 H 0.06 1.89 7.99 -2.38 -0.02 1.87 16 23 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 25 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.10 2.93 8.14 -2.39 -0.02 2.91 16 27 H 0.10 2.94 8.14 -2.39 -0.02 2.92 16 28 H 0.09 3.80 8.14 -2.39 -0.02 3.78 16 29 H 0.07 3.38 7.77 -2.39 -0.02 3.37 16 30 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 Total: -1.00 -65.07 253.29 2.20 -62.88 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: 1.10 Total: 9.80 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: 3.55 Total: -15.11 kcal Atomic # 7 Polarization: -78.46 SS G_CDS: -3.63 Total: -82.09 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: -0.85 Total: -20.68 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.20 kcal Total: -65.07 2.20 -62.88 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260756442.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.917 kcal (2) G-P(sol) polarization free energy of solvation -65.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds