Wall clock time and date at job start Mon Mar 30 2020 01:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 114.00072 * 2 1 4 4 C 1.52999 * 109.47024 * 180.02562 * 3 2 1 5 5 C 1.50702 * 109.46829 * 179.97438 * 4 3 2 6 6 N 1.30805 * 125.15160 * 89.97548 * 5 4 3 7 7 C 1.33332 * 109.25127 * 180.02562 * 6 5 4 8 8 C 1.39416 * 107.08118 * 0.02562 * 7 6 5 9 9 C 1.39847 * 126.87217 * 180.02562 * 8 7 6 10 10 H 1.08008 * 119.99993 * 354.29292 * 9 8 7 11 11 C 1.40170 * 120.00203 * 174.29077 * 9 8 7 12 12 N 1.30791 * 119.99785 * 6.02754 * 11 9 8 13 13 Si 1.86797 * 119.99906 * 186.03064 * 11 9 8 14 14 H 1.48500 * 109.47567 * 94.98226 * 13 11 9 15 15 H 1.48505 * 109.46967 * 214.97849 * 13 11 9 16 16 H 1.48501 * 109.47204 * 334.98039 * 13 11 9 17 17 O 1.34015 * 125.15312 * 269.99288 * 5 4 3 18 18 H 1.08997 * 109.47201 * 300.00696 * 1 2 3 19 19 H 1.09000 * 109.46627 * 60.00320 * 1 2 3 20 20 H 1.08997 * 109.47072 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.47145 * 59.99511 * 3 2 1 22 22 H 1.09004 * 109.47021 * 299.99538 * 3 2 1 23 23 H 1.08997 * 109.47533 * 59.99270 * 4 3 2 24 24 H 1.09004 * 109.46837 * 299.99642 * 4 3 2 25 25 H 1.07997 * 126.45727 * 179.97438 * 7 6 5 26 26 H 0.97008 * 120.00058 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1484 2.5613 -0.0013 6 7 4.4548 3.2498 1.0679 7 6 4.9758 4.4213 0.7021 8 6 4.9865 4.4473 -0.6918 9 6 5.4481 5.4847 -1.5082 10 1 5.7628 6.4193 -1.0677 11 6 5.5023 5.3117 -2.8981 12 7 5.0125 4.2276 -3.4417 13 14 6.2742 6.6293 -3.9739 14 1 7.6962 6.2877 -4.2317 15 1 5.5421 6.7068 -5.2637 16 1 6.1979 7.9409 -3.2818 17 8 4.4619 3.2659 -1.0973 18 1 -0.3633 0.5139 0.8899 19 1 -0.3632 0.5138 -0.8900 20 1 -0.3633 -1.0276 0.0005 21 1 1.6886 1.8464 0.8899 22 1 1.6887 1.8463 -0.8901 23 1 3.8568 0.6437 -0.8907 24 1 3.8574 0.6435 0.8892 25 1 5.3231 5.2031 1.3613 26 1 5.0497 4.1079 -4.4036 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260864008.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:05 Heat of formation + Delta-G solvation = -75.097176 kcal Electronic energy + Delta-G solvation = -12100.600483 eV Core-core repulsion = 9758.328441 eV Total energy + Delta-G solvation = -2342.272043 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.00371 -38.89514 -35.92507 -34.75260 -33.59147 -30.81717 -27.78640 -26.37544 -24.22375 -22.59276 -21.58117 -19.50888 -17.74136 -17.16442 -17.05546 -16.72870 -16.34778 -15.66906 -15.24304 -14.51163 -14.08537 -13.77262 -13.17611 -13.07948 -12.88404 -12.75844 -12.35787 -12.16551 -12.01369 -11.62687 -11.39244 -10.93072 -10.67067 -9.51491 -8.89101 -6.63572 1.02890 1.37334 1.55791 1.59970 2.12841 2.14823 2.53532 3.02776 3.10277 3.85922 4.09167 4.13768 4.42755 4.52526 4.57900 4.76712 4.80320 4.85240 4.96621 5.00075 5.16707 5.55694 6.03703 6.14351 6.20902 6.43551 6.53585 7.59574 8.13252 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.052500 B = 0.008528 C = 0.007646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.208115 B = 3282.326877 C = 3661.275782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.407 6.407 3 C 0.081 3.919 4 C 0.013 3.987 5 C 0.012 3.988 6 N -0.463 5.463 7 C -0.259 4.259 8 C 0.145 3.855 9 C -0.459 4.459 10 H 0.123 0.877 11 C 0.020 3.980 12 N -0.808 5.808 13 Si 1.012 2.988 14 H -0.259 1.259 15 H -0.264 1.264 16 H -0.246 1.246 17 O -0.210 6.210 18 H 0.049 0.951 19 H 0.045 0.955 20 H 0.109 0.891 21 H 0.051 0.949 22 H 0.041 0.959 23 H 0.085 0.915 24 H 0.102 0.898 25 H 0.165 0.835 26 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.440 -2.169 -1.124 5.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.326 6.326 3 C 0.004 3.996 4 C -0.025 4.025 5 C -0.188 4.188 6 N -0.192 5.192 7 C -0.403 4.403 8 C 0.090 3.910 9 C -0.487 4.487 10 H 0.141 0.859 11 C -0.198 4.198 12 N -0.433 5.433 13 Si 0.830 3.170 14 H -0.183 1.183 15 H -0.188 1.188 16 H -0.169 1.169 17 O -0.100 6.100 18 H 0.067 0.933 19 H 0.063 0.937 20 H 0.128 0.872 21 H 0.069 0.931 22 H 0.059 0.941 23 H 0.103 0.897 24 H 0.120 0.880 25 H 0.182 0.818 26 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.527 -2.775 -0.721 5.359 hybrid contribution 0.207 0.953 -0.951 1.362 sum -4.320 -1.822 -1.672 4.978 Atomic orbital electron populations 1.22985 0.79172 1.04279 1.00725 1.87774 1.21828 1.27444 1.95579 1.22287 0.92722 0.84490 1.00118 1.19303 0.92720 0.85960 1.04520 1.25404 1.14025 0.99691 0.79726 1.69332 1.13016 1.05393 1.31437 1.23109 1.24775 0.99788 0.92667 1.21170 0.92025 0.84337 0.93461 1.19314 1.38383 0.99264 0.91764 0.85931 1.27343 0.93326 0.99258 0.99884 1.69846 1.31826 1.26810 1.14866 0.84731 0.78483 0.77283 0.76514 1.18295 1.18782 1.16890 1.84694 1.63722 1.26483 1.35094 0.93255 0.93677 0.87247 0.93089 0.94083 0.89692 0.87989 0.81795 0.89122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.56 11.01 113.37 1.25 1.81 15 2 O -0.41 -13.09 10.70 -148.98 -1.59 -14.69 15 3 C 0.08 2.97 5.92 71.98 0.43 3.39 15 4 C 0.01 0.54 6.21 29.85 0.19 0.73 15 5 C 0.01 0.65 7.55 88.26 0.67 1.31 15 6 N -0.46 -25.17 11.23 -300.12 -3.37 -28.54 15 7 C -0.26 -14.32 11.99 84.75 1.02 -13.30 15 8 C 0.14 8.39 6.82 22.94 0.16 8.54 15 9 C -0.46 -24.48 9.34 23.13 0.22 -24.26 15 10 H 0.12 5.93 7.86 -2.91 -0.02 5.90 15 11 C 0.02 1.00 5.49 85.32 0.47 1.47 15 12 N -0.81 -42.53 12.08 21.87 0.26 -42.27 15 13 Si 1.01 35.77 29.57 68.60 2.03 37.80 15 14 H -0.26 -8.81 7.11 99.48 0.71 -8.10 15 15 H -0.26 -8.82 7.11 99.48 0.71 -8.11 15 16 H -0.25 -8.17 7.11 99.48 0.71 -7.46 15 17 O -0.21 -12.36 9.19 -11.82 -0.11 -12.47 15 18 H 0.05 1.04 8.14 -2.39 -0.02 1.02 15 19 H 0.04 0.99 8.14 -2.39 -0.02 0.97 15 20 H 0.11 1.93 8.14 -2.39 -0.02 1.91 15 21 H 0.05 1.86 8.14 -2.39 -0.02 1.84 15 22 H 0.04 1.57 8.14 -2.39 -0.02 1.55 15 23 H 0.08 3.34 8.14 -2.39 -0.02 3.32 15 24 H 0.10 3.82 8.14 -2.39 -0.02 3.80 15 25 H 0.16 8.18 8.06 -2.91 -0.02 8.16 15 26 H 0.30 13.86 8.30 -92.70 -0.77 13.09 15 Total: -1.00 -65.37 239.64 2.77 -62.60 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: 1.17 Total: 17.88 kcal Atomic # 6 Polarization: -24.70 SS G_CDS: 4.38 Total: -20.32 kcal Atomic # 7 Polarization: -67.70 SS G_CDS: -3.11 Total: -70.81 kcal Atomic # 8 Polarization: -25.45 SS G_CDS: -1.70 Total: -27.15 kcal Atomic # 14 Polarization: 35.77 SS G_CDS: 2.03 Total: 37.80 kcal Total: -65.37 2.77 -62.60 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260864008.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.495 kcal (2) G-P(sol) polarization free energy of solvation -65.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds