Wall clock time and date at job start Mon Mar 30 2020 02:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00217 * 2 1 4 4 H 1.48495 * 109.47230 * 269.99903 * 3 2 1 5 5 H 1.48504 * 109.47328 * 30.00263 * 3 2 1 6 6 H 1.48506 * 109.47092 * 150.00320 * 3 2 1 7 7 C 1.37874 * 120.00019 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00678 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99760 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.46996 * 300.00130 * 9 7 2 11 11 C 1.52998 * 109.47023 * 60.00392 * 9 7 2 12 12 N 1.46901 * 109.47160 * 185.00035 * 11 9 7 13 13 C 1.50699 * 109.47112 * 180.02562 * 9 7 2 14 14 C 1.30680 * 118.32936 * 120.00029 * 13 9 7 15 15 C 1.50446 * 122.49618 * 180.43069 * 14 13 9 16 16 C 1.53250 * 109.44157 * 342.51988 * 15 14 13 17 17 C 1.53491 * 108.17035 * 46.81182 * 16 15 14 18 18 O 1.35135 * 118.32708 * 299.97657 * 13 9 7 19 19 H 0.97007 * 119.99489 * 0.02562 * 1 2 3 20 20 H 1.09003 * 109.47150 * 304.99503 * 11 9 7 21 21 H 1.09000 * 109.47752 * 65.00114 * 11 9 7 22 22 H 1.00908 * 111.00241 * 56.04055 * 12 11 9 23 23 H 1.00897 * 111.00265 * 179.97438 * 12 11 9 24 24 H 1.08002 * 118.75679 * 0.41052 * 14 13 9 25 25 H 1.09003 * 109.47642 * 102.51355 * 15 14 13 26 26 H 1.08999 * 109.47664 * 222.52334 * 15 14 13 27 27 H 1.09001 * 109.72850 * 166.48761 * 16 15 14 28 28 H 1.09003 * 109.72664 * 287.15516 * 16 15 14 29 29 H 1.09000 * 109.70648 * 177.93076 * 17 16 15 30 30 H 1.08991 * 109.74509 * 57.32338 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 1 0.6246 -2.5570 0.8897 11 6 0.3709 -2.5799 -1.2495 12 7 -0.4525 -3.7950 -1.1906 13 6 2.2302 -3.6446 -0.0005 14 6 2.1959 -4.4897 0.9956 15 6 3.1357 -5.6604 1.0951 16 6 3.7622 -5.9295 -0.2773 17 6 4.2396 -4.5906 -0.8564 18 8 3.0986 -3.7458 -1.0309 19 1 -0.4850 0.8401 -0.0004 20 1 -0.2766 -1.7042 -1.2950 21 1 1.0022 -2.6115 -2.1375 22 1 -0.9998 -3.8204 -0.3433 23 1 -1.0434 -3.8712 -2.0049 24 1 1.4656 -4.3420 1.7774 25 1 3.9219 -5.4351 1.8157 26 1 2.5846 -6.5420 1.4223 27 1 4.6096 -6.6064 -0.1686 28 1 3.0193 -6.3729 -0.9404 29 1 4.7236 -4.7581 -1.8187 30 1 4.9426 -4.1215 -0.1682 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260884149.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:15 Heat of formation + Delta-G solvation = -37.975951 kcal Electronic energy + Delta-G solvation = -12938.798210 eV Core-core repulsion = 10733.968959 eV Total energy + Delta-G solvation = -2204.829251 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.26860 -35.12734 -33.15705 -32.11856 -31.00290 -27.76824 -24.79381 -23.82564 -22.48871 -20.04592 -18.16090 -16.40941 -15.80605 -14.98693 -14.67176 -14.48372 -13.85257 -13.47822 -13.07018 -12.51894 -12.23134 -12.12460 -11.77545 -11.47087 -10.97549 -10.84873 -10.42299 -10.13977 -10.02997 -9.93613 -9.27607 -9.20577 -8.47636 -7.51563 -7.19598 -6.04034 -4.11097 3.29307 3.35022 3.37832 3.47513 4.33036 4.41941 5.23554 5.25033 5.32740 5.48516 5.82132 5.83358 5.99412 6.07469 6.20122 6.27905 6.54725 6.68498 6.80877 7.04599 7.21674 7.44926 7.62539 7.70375 7.94189 8.12017 8.38514 8.45562 8.77142 8.92804 9.52522 10.99559 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.039232 B = 0.012053 C = 0.010381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.531188 B = 2322.456830 C = 2696.577027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.061 3.939 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.504 4.504 8 H 0.060 0.940 9 C 0.092 3.908 10 H 0.046 0.954 11 C 0.063 3.937 12 N -0.856 5.856 13 C 0.157 3.843 14 C -0.335 4.335 15 C -0.065 4.065 16 C -0.157 4.157 17 C 0.058 3.942 18 O -0.307 6.307 19 H 0.261 0.739 20 H 0.067 0.933 21 H 0.048 0.952 22 H 0.328 0.672 23 H 0.319 0.681 24 H 0.108 0.892 25 H 0.052 0.948 26 H 0.060 0.940 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.090 0.910 30 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.804 -7.331 -0.652 8.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.140 4.140 3 Si 0.725 3.275 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.543 4.543 8 H 0.078 0.922 9 C 0.073 3.927 10 H 0.064 0.936 11 C -0.066 4.066 12 N -0.383 5.383 13 C 0.112 3.888 14 C -0.355 4.355 15 C -0.102 4.102 16 C -0.195 4.195 17 C -0.017 4.017 18 O -0.220 6.220 19 H 0.071 0.929 20 H 0.085 0.915 21 H 0.067 0.933 22 H 0.138 0.862 23 H 0.128 0.872 24 H 0.126 0.874 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.108 0.892 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.359 -7.483 -0.843 8.701 hybrid contribution -0.285 1.361 0.245 1.412 sum 4.075 -6.121 -0.598 7.378 Atomic orbital electron populations 1.69867 1.05907 1.26645 1.50858 1.24967 0.94928 0.99225 0.94914 0.86501 0.79847 0.82986 0.78171 1.20584 1.21226 1.19826 1.21041 0.93237 0.89586 1.50395 0.92194 1.18005 0.90479 0.89056 0.95180 0.93601 1.21971 0.95978 0.89948 0.98739 1.59023 1.29545 1.43879 1.05851 1.21034 0.88815 0.93858 0.85113 1.21809 1.08456 1.00946 1.04248 1.20133 0.97350 0.97214 0.95535 1.22204 1.00966 0.97689 0.98648 1.22822 0.87841 0.90091 1.00993 1.85939 1.33279 1.63978 1.38830 0.92892 0.91535 0.93296 0.86152 0.87163 0.87387 0.92922 0.92165 0.91550 0.90989 0.89154 0.92843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.13 11.29 55.43 0.63 -24.50 16 2 C 0.06 1.67 5.29 -17.82 -0.09 1.58 16 3 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.50 -14.07 8.44 -34.44 -0.29 -14.37 16 8 H 0.06 1.70 7.74 -52.49 -0.41 1.29 16 9 C 0.09 2.36 2.11 -92.92 -0.20 2.16 16 10 H 0.05 1.26 7.62 -51.93 -0.40 0.86 16 11 C 0.06 1.55 5.97 -3.82 -0.02 1.53 16 12 N -0.86 -17.68 9.34 -10.37 -0.10 -17.78 16 13 C 0.16 3.67 4.94 -35.94 -0.18 3.49 16 14 C -0.33 -7.07 9.55 -36.06 -0.34 -7.42 16 15 C -0.07 -1.11 6.23 -27.88 -0.17 -1.28 16 16 C -0.16 -2.44 6.24 -26.35 -0.16 -2.60 16 17 C 0.06 1.00 7.09 37.41 0.27 1.27 16 18 O -0.31 -6.91 9.91 -17.11 -0.17 -7.08 16 19 H 0.26 7.01 8.31 -40.82 -0.34 6.68 16 20 H 0.07 1.77 5.95 -51.93 -0.31 1.46 16 21 H 0.05 1.24 7.92 -51.93 -0.41 0.83 16 22 H 0.33 6.53 8.99 -39.29 -0.35 6.18 16 23 H 0.32 5.78 9.08 -39.29 -0.36 5.43 16 24 H 0.11 2.30 7.66 -52.49 -0.40 1.90 16 25 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 249.39 15.07 3.76 3.76 Total: -1.00 -29.06 249.39 -6.41 -35.47 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -4.31 Total: 9.41 kcal Atomic # 6 Polarization: -14.44 SS G_CDS: -1.20 Total: -15.64 kcal Atomic # 7 Polarization: -42.81 SS G_CDS: 0.53 Total: -42.28 kcal Atomic # 8 Polarization: -6.91 SS G_CDS: -0.17 Total: -7.08 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -29.06 -6.41 -35.47 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260884149.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.507 kcal (2) G-P(sol) polarization free energy of solvation -29.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds