Wall clock time and date at job start Mon Mar 30 2020 02:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00217 * 2 1 4 4 H 1.48495 * 109.47230 * 269.99903 * 3 2 1 5 5 H 1.48504 * 109.47328 * 30.00263 * 3 2 1 6 6 H 1.48506 * 109.47092 * 150.00320 * 3 2 1 7 7 C 1.37874 * 120.00019 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00678 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99760 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.46996 * 300.00130 * 9 7 2 11 11 C 1.52998 * 109.47023 * 60.00392 * 9 7 2 12 12 N 1.46901 * 109.47160 * 185.00035 * 11 9 7 13 13 C 1.50699 * 109.47112 * 180.02562 * 9 7 2 14 14 C 1.30680 * 118.32936 * 120.00029 * 13 9 7 15 15 C 1.50446 * 122.49618 * 180.43069 * 14 13 9 16 16 C 1.53250 * 109.44157 * 342.51988 * 15 14 13 17 17 C 1.53491 * 108.17035 * 46.81182 * 16 15 14 18 18 O 1.35135 * 118.32708 * 299.97657 * 13 9 7 19 19 H 0.97007 * 119.99489 * 0.02562 * 1 2 3 20 20 H 1.09003 * 109.47150 * 304.99503 * 11 9 7 21 21 H 1.09000 * 109.47752 * 65.00114 * 11 9 7 22 22 H 1.00908 * 111.00241 * 56.04055 * 12 11 9 23 23 H 1.00897 * 111.00265 * 179.97438 * 12 11 9 24 24 H 1.08002 * 118.75679 * 0.41052 * 14 13 9 25 25 H 1.09003 * 109.47642 * 102.51355 * 15 14 13 26 26 H 1.08999 * 109.47664 * 222.52334 * 15 14 13 27 27 H 1.09001 * 109.72850 * 166.48761 * 16 15 14 28 28 H 1.09003 * 109.72664 * 287.15516 * 16 15 14 29 29 H 1.09000 * 109.70648 * 177.93076 * 17 16 15 30 30 H 1.08991 * 109.74509 * 57.32338 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 1 0.6246 -2.5570 0.8897 11 6 0.3709 -2.5799 -1.2495 12 7 -0.4525 -3.7950 -1.1906 13 6 2.2302 -3.6446 -0.0005 14 6 2.1959 -4.4897 0.9956 15 6 3.1357 -5.6604 1.0951 16 6 3.7622 -5.9295 -0.2773 17 6 4.2396 -4.5906 -0.8564 18 8 3.0986 -3.7458 -1.0309 19 1 -0.4850 0.8401 -0.0004 20 1 -0.2766 -1.7042 -1.2950 21 1 1.0022 -2.6115 -2.1375 22 1 -0.9998 -3.8204 -0.3433 23 1 -1.0434 -3.8712 -2.0049 24 1 1.4656 -4.3420 1.7774 25 1 3.9219 -5.4351 1.8157 26 1 2.5846 -6.5420 1.4223 27 1 4.6096 -6.6064 -0.1686 28 1 3.0193 -6.3729 -0.9404 29 1 4.7236 -4.7581 -1.8187 30 1 4.9426 -4.1215 -0.1682 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260884149.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:15 Heat of formation + Delta-G solvation = -58.136104 kcal Electronic energy + Delta-G solvation = -12939.672420 eV Core-core repulsion = 10733.968959 eV Total energy + Delta-G solvation = -2205.703461 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.84650 -37.01265 -34.61185 -34.13972 -32.66543 -29.58160 -26.41523 -25.70797 -24.01588 -21.92128 -19.68614 -18.45444 -17.46330 -16.72924 -16.47640 -16.02103 -15.62472 -14.89161 -14.74749 -14.35741 -13.97860 -13.68833 -13.47999 -13.12157 -12.87872 -12.62713 -12.17232 -11.99304 -11.61992 -11.43138 -11.20521 -10.93745 -10.57168 -9.33630 -8.87342 -8.12654 -6.28868 1.40264 1.40516 1.51184 1.75679 2.42118 2.80431 3.11614 3.95725 4.02635 4.08595 4.21125 4.54788 4.57937 4.74843 4.80574 4.88006 4.97100 5.03369 5.11401 5.30823 5.40515 5.63634 5.71741 5.78338 5.91015 6.18042 6.49850 6.69364 6.87837 7.13547 7.37843 8.88310 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.039232 B = 0.012053 C = 0.010381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.531188 B = 2322.456830 C = 2696.577027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.017 3.983 3 Si 0.959 3.041 4 H -0.274 1.274 5 H -0.279 1.279 6 H -0.271 1.271 7 C -0.526 4.526 8 H 0.048 0.952 9 C 0.089 3.911 10 H 0.019 0.981 11 C 0.081 3.919 12 N -0.846 5.846 13 C 0.133 3.867 14 C -0.326 4.326 15 C -0.068 4.068 16 C -0.149 4.149 17 C 0.046 3.954 18 O -0.335 6.335 19 H 0.264 0.736 20 H 0.041 0.959 21 H 0.033 0.967 22 H 0.334 0.666 23 H 0.336 0.664 24 H 0.097 0.903 25 H 0.067 0.933 26 H 0.080 0.920 27 H 0.107 0.893 28 H 0.065 0.935 29 H 0.119 0.881 30 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.968 -8.280 -0.666 9.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.182 4.182 3 Si 0.784 3.216 4 H -0.200 1.200 5 H -0.204 1.204 6 H -0.195 1.195 7 C -0.565 4.565 8 H 0.066 0.934 9 C 0.071 3.929 10 H 0.037 0.963 11 C -0.050 4.050 12 N -0.374 5.374 13 C 0.088 3.912 14 C -0.346 4.346 15 C -0.105 4.105 16 C -0.186 4.186 17 C -0.029 4.029 18 O -0.249 6.249 19 H 0.073 0.927 20 H 0.059 0.941 21 H 0.052 0.948 22 H 0.145 0.855 23 H 0.147 0.853 24 H 0.115 0.885 25 H 0.086 0.914 26 H 0.098 0.902 27 H 0.125 0.875 28 H 0.083 0.917 29 H 0.137 0.863 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.517 -8.452 -0.859 10.130 hybrid contribution -0.651 1.599 0.268 1.747 sum 4.866 -6.853 -0.591 8.426 Atomic orbital electron populations 1.69977 1.07001 1.27466 1.50930 1.25710 0.95797 1.02319 0.94389 0.85543 0.78677 0.79033 0.78362 1.19980 1.20430 1.19523 1.21257 0.92870 0.91215 1.51146 0.93417 1.17836 0.91050 0.89804 0.94256 0.96322 1.21599 0.95543 0.90272 0.97604 1.58882 1.29918 1.41653 1.06991 1.20646 0.89817 0.94076 0.86654 1.22110 1.08291 1.01620 1.02548 1.20248 0.97117 0.95954 0.97151 1.22183 1.02099 0.97239 0.97116 1.23222 0.86309 0.90327 1.03015 1.85856 1.34571 1.65738 1.38741 0.92715 0.94063 0.94803 0.85518 0.85291 0.88509 0.91420 0.90185 0.87488 0.91666 0.86349 0.92574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.28 11.29 21.45 0.24 -52.04 16 2 C 0.02 0.94 5.29 84.65 0.45 1.39 16 3 Si 0.96 44.08 29.54 68.60 2.03 46.11 16 4 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 5 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 6 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 7 C -0.53 -30.11 8.44 25.60 0.22 -29.89 16 8 H 0.05 2.77 7.74 -2.91 -0.02 2.74 16 9 C 0.09 4.73 2.11 -12.29 -0.03 4.71 16 10 H 0.02 1.07 7.62 -2.39 -0.02 1.05 16 11 C 0.08 4.03 5.97 86.30 0.52 4.55 16 12 N -0.85 -34.94 9.34 -186.72 -1.74 -36.68 16 13 C 0.13 6.26 4.94 25.97 0.13 6.39 16 14 C -0.33 -13.55 9.55 25.90 0.25 -13.30 16 15 C -0.07 -2.11 6.23 29.85 0.19 -1.92 16 16 C -0.15 -4.11 6.24 30.84 0.19 -3.92 16 17 C 0.05 1.48 7.09 72.15 0.51 1.99 16 18 O -0.33 -14.96 9.91 -84.13 -0.83 -15.79 16 19 H 0.26 14.28 8.31 -92.70 -0.77 13.51 16 20 H 0.04 2.26 5.95 -2.39 -0.01 2.25 16 21 H 0.03 1.76 7.92 -2.39 -0.02 1.74 16 22 H 0.33 13.32 8.99 -89.69 -0.81 12.52 16 23 H 0.34 11.97 9.08 -89.70 -0.81 11.15 16 24 H 0.10 4.15 7.66 -2.91 -0.02 4.13 16 25 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 27 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.12 3.07 8.14 -2.39 -0.02 3.05 16 30 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -62.90 249.39 1.63 -61.27 By element: Atomic # 1 Polarization: 27.64 SS G_CDS: -0.48 Total: 27.16 kcal Atomic # 6 Polarization: -32.44 SS G_CDS: 2.42 Total: -30.02 kcal Atomic # 7 Polarization: -87.22 SS G_CDS: -1.50 Total: -88.73 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: -0.83 Total: -15.79 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -62.90 1.63 -61.27 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260884149.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.136 kcal (2) G-P(sol) polarization free energy of solvation -62.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds