Wall clock time and date at job start Mon Mar 30 2020 01:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00082 * 2 1 4 4 H 1.48498 * 109.47152 * 264.84992 * 3 2 1 5 5 H 1.48497 * 109.46996 * 24.85446 * 3 2 1 6 6 H 1.48508 * 109.47007 * 144.85112 * 3 2 1 7 7 C 1.37880 * 119.99447 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00464 * 4.79604 * 7 2 1 9 9 C 1.50703 * 119.99279 * 184.79735 * 7 2 1 10 10 H 1.08992 * 109.47468 * 335.02333 * 9 7 2 11 11 C 1.53000 * 109.47023 * 95.02504 * 9 7 2 12 12 N 1.46904 * 109.47055 * 185.47557 * 11 9 7 13 13 C 1.50703 * 109.46803 * 215.02076 * 9 7 2 14 14 C 1.32856 * 126.04045 * 120.00522 * 13 9 7 15 15 N 1.38696 * 107.91496 * 179.97438 * 14 13 9 16 16 H 0.97003 * 125.98667 * 180.02562 * 15 14 13 17 17 C 1.34756 * 108.03301 * 359.97438 * 15 14 13 18 18 O 1.21791 * 125.95036 * 180.02562 * 17 15 14 19 19 N 1.34765 * 108.10152 * 359.73139 * 17 15 14 20 20 H 0.96999 * 125.98124 * 180.28820 * 19 17 15 21 21 H 0.97004 * 120.00105 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.47042 * 305.47569 * 11 9 7 23 23 H 1.09000 * 109.47547 * 65.47813 * 11 9 7 24 24 H 1.00901 * 110.99885 * 179.97438 * 12 11 9 25 25 H 1.00896 * 111.00103 * 303.95036 * 12 11 9 26 26 H 1.08000 * 126.04488 * 359.97088 * 14 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6055 1.9835 -1.3944 5 1 1.3965 2.6816 0.5885 6 1 3.4881 1.4739 0.8061 7 6 2.0044 -1.1941 -0.0005 8 1 1.4673 -2.1277 -0.0791 9 6 3.5075 -1.1964 0.1086 10 1 3.8999 -0.2480 -0.2581 11 6 3.9122 -1.3842 1.5721 12 7 5.3703 -1.2556 1.6973 13 6 4.0693 -2.3253 -0.7167 14 6 4.9126 -2.2039 -1.7361 15 7 5.1827 -3.4753 -2.2201 16 1 5.7682 -3.6898 -2.9632 17 6 4.4904 -4.3605 -1.4765 18 8 4.4903 -5.5699 -1.6206 19 7 3.8032 -3.6751 -0.5415 20 1 3.2223 -4.0586 0.1340 21 1 -0.4850 0.8401 -0.0004 22 1 3.4266 -0.6238 2.1838 23 1 3.6044 -2.3736 1.9102 24 1 5.6629 -1.3753 2.6555 25 1 5.8442 -1.9074 1.0901 26 1 5.3163 -1.2787 -2.1201 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260890245.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:19 Heat of formation + Delta-G solvation = -26.960049 kcal Electronic energy + Delta-G solvation = -12547.513961 eV Core-core repulsion = 10239.622052 eV Total energy + Delta-G solvation = -2307.891909 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.090 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -43.07345 -38.24065 -36.74235 -34.39535 -34.14134 -31.61422 -28.77560 -25.58903 -23.35519 -23.16595 -21.32364 -19.16370 -18.62654 -17.18503 -17.14061 -16.65162 -16.09999 -15.67220 -15.43483 -15.00826 -14.59185 -14.23353 -13.32646 -13.13574 -12.61762 -12.24496 -12.11545 -11.74508 -11.58335 -11.42303 -11.29677 -10.68165 -9.47871 -8.55483 -8.26261 -6.34020 1.44464 1.49592 1.55042 1.61276 1.84414 1.96259 2.41518 2.89224 3.12202 3.93758 4.19355 4.54808 4.64186 4.78888 4.85535 4.92623 5.20857 5.40502 5.62476 5.80217 6.17055 6.28614 6.43256 6.54623 6.70360 6.80649 7.33234 7.44241 8.89544 Molecular weight = 197.09amu Principal moments of inertia in cm(-1) A = 0.040601 B = 0.012305 C = 0.011246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.468250 B = 2274.920041 C = 2489.093514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.018 3.982 3 Si 0.939 3.061 4 H -0.262 1.262 5 H -0.297 1.297 6 H -0.232 1.232 7 C -0.515 4.515 8 H 0.032 0.968 9 C 0.085 3.915 10 H 0.071 0.929 11 C 0.075 3.925 12 N -0.847 5.847 13 C 0.049 3.951 14 C -0.027 4.027 15 N -0.618 5.618 16 H 0.442 0.558 17 C 0.633 3.367 18 O -0.635 6.635 19 N -0.625 5.625 20 H 0.427 0.573 21 H 0.266 0.734 22 H 0.057 0.943 23 H 0.013 0.987 24 H 0.343 0.657 25 H 0.340 0.660 26 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.255 0.818 -0.562 12.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.180 4.180 3 Si 0.762 3.238 4 H -0.187 1.187 5 H -0.223 1.223 6 H -0.155 1.155 7 C -0.554 4.554 8 H 0.051 0.949 9 C 0.065 3.935 10 H 0.089 0.911 11 C -0.057 4.057 12 N -0.377 5.377 13 C -0.057 4.057 14 C -0.149 4.149 15 N -0.261 5.261 16 H 0.285 0.715 17 C 0.333 3.667 18 O -0.520 6.520 19 N -0.266 5.266 20 H 0.267 0.733 21 H 0.075 0.925 22 H 0.076 0.924 23 H 0.031 0.969 24 H 0.156 0.844 25 H 0.153 0.847 26 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 12.004 0.936 -0.924 12.076 hybrid contribution -0.622 -0.695 0.344 0.994 sum 11.382 0.241 -0.580 11.399 Atomic orbital electron populations 1.70055 1.08553 1.28291 1.51613 1.25936 0.95352 1.03125 0.93576 0.85845 0.79800 0.78142 0.79987 1.18663 1.22345 1.15499 1.20995 0.90565 0.93196 1.50620 0.94936 1.17788 0.93112 0.91746 0.90860 0.91121 1.21938 0.87660 0.98229 0.97829 1.58798 1.05788 1.60401 1.12760 1.20732 0.99669 0.84320 1.00953 1.21932 1.04876 0.89384 0.98732 1.42951 1.44206 1.06125 1.32820 0.71540 1.16405 0.82941 0.84899 0.82503 1.90995 1.73101 1.11725 1.76130 1.43225 1.44212 1.07384 1.31740 0.73312 0.92471 0.92436 0.96922 0.84422 0.84749 0.77066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.84 13.96 21.45 0.30 -55.54 15 2 C 0.02 0.98 5.47 84.66 0.46 1.44 15 3 Si 0.94 39.90 26.99 68.60 1.85 41.75 15 4 H -0.26 -10.58 7.11 99.48 0.71 -9.88 15 5 H -0.30 -12.93 7.11 99.48 0.71 -12.22 15 6 H -0.23 -9.02 6.82 99.48 0.68 -8.34 15 7 C -0.52 -26.29 8.84 25.60 0.23 -26.07 15 8 H 0.03 1.88 8.06 -2.91 -0.02 1.86 15 9 C 0.09 3.37 2.04 -12.28 -0.03 3.35 15 10 H 0.07 2.73 5.26 -2.39 -0.01 2.72 15 11 C 0.07 2.67 6.21 86.30 0.54 3.20 15 12 N -0.85 -24.01 9.62 -186.71 -1.80 -25.81 15 13 C 0.05 1.73 4.72 40.30 0.19 1.92 15 14 C -0.03 -0.75 11.81 82.43 0.97 0.23 15 15 N -0.62 -17.18 6.15 -323.82 -1.99 -19.17 15 16 H 0.44 9.16 8.96 -92.71 -0.83 8.33 15 17 C 0.63 23.22 9.33 179.06 1.67 24.89 15 18 O -0.64 -27.71 18.06 -4.64 -0.08 -27.80 15 19 N -0.63 -22.52 6.15 -311.98 -1.92 -24.44 15 20 H 0.43 15.31 8.96 -92.71 -0.83 14.47 15 21 H 0.27 14.81 8.31 -92.70 -0.77 14.04 15 22 H 0.06 2.22 8.14 -2.39 -0.02 2.20 15 23 H 0.01 0.45 8.14 -2.39 -0.02 0.43 15 24 H 0.34 8.16 9.08 -89.69 -0.81 7.34 15 25 H 0.34 9.00 8.09 -89.70 -0.73 8.28 15 26 H 0.21 4.35 8.06 -2.91 -0.02 4.33 15 Total: -1.00 -66.90 231.46 -1.59 -68.48 By element: Atomic # 1 Polarization: 35.54 SS G_CDS: -1.98 Total: 33.56 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: 4.03 Total: 8.95 kcal Atomic # 7 Polarization: -119.54 SS G_CDS: -5.41 Total: -124.95 kcal Atomic # 8 Polarization: -27.71 SS G_CDS: -0.08 Total: -27.80 kcal Atomic # 14 Polarization: 39.90 SS G_CDS: 1.85 Total: 41.75 kcal Total: -66.90 -1.59 -68.48 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260890245.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.522 kcal (2) G-P(sol) polarization free energy of solvation -66.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds