Wall clock time and date at job start Mon Mar 30 2020 02:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 120.00250 * 2 1 4 4 H 1.48504 * 109.46959 * 239.99727 * 3 2 1 5 5 H 1.48497 * 109.47219 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47327 * 120.00084 * 3 2 1 7 7 C 1.37881 * 119.99532 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99636 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00096 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.46913 * 179.97438 * 9 7 2 11 11 H 1.09004 * 109.47539 * 304.99430 * 10 9 7 12 12 N 1.46905 * 109.47613 * 64.99945 * 10 9 7 13 13 C 1.50701 * 109.47224 * 184.99921 * 10 9 7 14 14 C 1.30679 * 118.33203 * 114.99644 * 13 10 9 15 15 C 1.50446 * 122.49674 * 180.41331 * 14 13 10 16 16 C 1.53245 * 109.44099 * 342.51782 * 15 14 13 17 17 C 1.53505 * 108.15965 * 46.82569 * 16 15 14 18 18 O 1.35144 * 118.32422 * 294.97774 * 13 10 9 19 19 H 0.97009 * 119.99361 * 0.02562 * 1 2 3 20 20 H 1.08999 * 109.47058 * 59.99543 * 9 7 2 21 21 H 1.09004 * 109.46769 * 299.99182 * 9 7 2 22 22 H 1.00903 * 110.99385 * 296.04611 * 12 10 9 23 23 H 1.00893 * 110.99926 * 59.99793 * 12 10 9 24 24 H 1.08001 * 118.75000 * 0.69552 * 14 13 10 25 25 H 1.09000 * 109.47511 * 102.50820 * 15 14 13 26 26 H 1.08997 * 109.47384 * 222.52150 * 15 14 13 27 27 H 1.08998 * 109.72795 * 166.48640 * 16 15 14 28 28 H 1.08998 * 109.72599 * 287.11324 * 16 15 14 29 29 H 1.08995 * 109.71033 * 57.28677 * 17 16 15 30 30 H 1.08996 * 109.70762 * 177.87528 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2450 -3.6621 0.0005 11 1 2.9292 -3.5554 -0.8413 12 7 3.0082 -3.6541 1.2558 13 6 1.4956 -4.9637 -0.1233 14 6 1.6767 -5.6837 -1.1987 15 6 0.9702 -6.9928 -1.4233 16 6 0.4180 -7.5097 -0.0906 17 6 -0.2948 -6.3476 0.6150 18 8 0.6708 -5.3270 0.8837 19 1 -0.4850 0.8402 -0.0004 20 1 0.6245 -2.5571 -0.8896 21 1 0.6240 -2.5567 0.8904 22 1 3.5700 -2.8193 1.3319 23 1 2.3960 -3.7518 2.0517 24 1 2.3631 -5.3277 -1.9527 25 1 0.1488 -6.8467 -2.1249 26 1 1.6724 -7.7193 -1.8321 27 1 -0.2898 -8.3180 -0.2742 28 1 1.2367 -7.8719 0.5312 29 1 -1.0787 -5.9511 -0.0302 30 1 -0.7307 -6.6975 1.5507 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260933727.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:09 Heat of formation + Delta-G solvation = -44.387438 kcal Electronic energy + Delta-G solvation = -12632.945434 eV Core-core repulsion = 10427.838160 eV Total energy + Delta-G solvation = -2205.107274 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.70704 -35.45580 -33.55320 -32.48367 -30.48144 -27.92566 -25.67835 -24.05218 -22.69461 -20.13994 -18.59040 -16.70470 -15.94895 -15.26393 -14.97451 -14.58056 -14.11952 -13.79376 -13.15793 -12.62489 -12.60436 -12.21152 -12.07609 -11.72874 -10.96511 -10.89405 -10.58821 -10.42527 -10.29114 -10.11620 -9.82325 -9.16441 -8.44560 -7.94917 -7.51613 -6.06020 -4.10663 2.84952 3.29792 3.34542 3.36747 3.87318 4.40468 4.94337 5.00902 5.17629 5.28835 5.51156 5.57062 5.73166 5.83567 5.86382 5.98108 6.19905 6.25821 6.39034 6.68196 6.72247 7.04792 7.48629 7.63129 7.89151 8.04252 8.22500 8.26989 8.38689 8.95782 9.53973 11.04737 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.063304 B = 0.008334 C = 0.008105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.206968 B = 3358.945995 C = 3453.854791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.527 4.527 8 H 0.057 0.943 9 C -0.001 4.001 10 C 0.135 3.865 11 H 0.086 0.914 12 N -0.838 5.838 13 C 0.124 3.876 14 C -0.307 4.307 15 C -0.071 4.071 16 C -0.159 4.159 17 C 0.059 3.941 18 O -0.311 6.311 19 H 0.262 0.738 20 H 0.018 0.982 21 H 0.023 0.977 22 H 0.345 0.655 23 H 0.336 0.664 24 H 0.116 0.884 25 H 0.062 0.938 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.059 0.941 30 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.556 -11.176 -0.179 11.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.142 4.142 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.565 4.565 8 H 0.075 0.925 9 C -0.040 4.040 10 C 0.023 3.977 11 H 0.104 0.896 12 N -0.366 5.366 13 C 0.078 3.922 14 C -0.327 4.327 15 C -0.108 4.108 16 C -0.197 4.197 17 C -0.016 4.016 18 O -0.225 6.225 19 H 0.071 0.929 20 H 0.036 0.964 21 H 0.041 0.959 22 H 0.158 0.842 23 H 0.147 0.853 24 H 0.134 0.866 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.078 0.922 30 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.749 -11.633 -0.267 11.660 hybrid contribution -0.302 1.682 -0.135 1.714 sum 0.447 -9.951 -0.402 9.969 Atomic orbital electron populations 1.69973 1.06123 1.26825 1.50015 1.25019 0.94843 0.99313 0.95040 0.86622 0.79544 0.82957 0.78673 1.20191 1.21284 1.20148 1.21113 0.92867 0.90820 1.51717 0.92515 1.19786 0.94536 0.91564 0.98087 1.20734 0.94205 0.89119 0.93600 0.89574 1.59206 1.27992 1.45447 1.03985 1.20811 0.89911 0.94073 0.87396 1.22041 1.10013 0.98970 1.01699 1.20214 0.99048 0.95245 0.96339 1.22228 1.01064 0.98202 0.98169 1.22910 0.90268 0.87475 1.00988 1.85888 1.45428 1.54484 1.36676 0.92859 0.96359 0.95875 0.84184 0.85260 0.86588 0.91999 0.91413 0.90889 0.90892 0.92228 0.88479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.73 13.29 55.43 0.74 -25.99 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.53 -14.59 8.55 -34.44 -0.29 -14.89 16 8 H 0.06 1.50 7.14 -52.49 -0.37 1.13 16 9 C 0.00 -0.03 4.58 -27.89 -0.13 -0.16 16 10 C 0.13 2.93 3.02 -68.86 -0.21 2.73 16 11 H 0.09 1.87 7.63 -51.93 -0.40 1.47 16 12 N -0.84 -16.93 9.18 -5.65 -0.05 -16.98 16 13 C 0.12 2.47 5.50 -35.94 -0.20 2.27 16 14 C -0.31 -5.44 9.55 -36.06 -0.34 -5.79 16 15 C -0.07 -1.01 6.23 -27.88 -0.17 -1.18 16 16 C -0.16 -2.04 6.24 -26.34 -0.16 -2.20 16 17 C 0.06 0.87 7.09 37.42 0.27 1.13 16 18 O -0.31 -5.99 9.99 -17.13 -0.17 -6.16 16 19 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 20 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 21 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 22 H 0.34 6.91 7.90 -39.29 -0.31 6.60 16 23 H 0.34 6.76 8.72 -39.30 -0.34 6.42 16 24 H 0.12 2.01 7.66 -52.49 -0.40 1.61 16 25 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 252.04 15.07 3.80 3.80 Total: -1.00 -30.13 252.04 -6.40 -36.53 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -4.34 Total: 8.85 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: -1.34 Total: -16.48 kcal Atomic # 7 Polarization: -43.65 SS G_CDS: 0.68 Total: -42.97 kcal Atomic # 8 Polarization: -5.99 SS G_CDS: -0.17 Total: -6.16 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -30.13 -6.40 -36.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260933727.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.861 kcal (2) G-P(sol) polarization free energy of solvation -30.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds