Wall clock time and date at job start Mon Mar 30 2020 02:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 120.00250 * 2 1 4 4 H 1.48504 * 109.46959 * 239.99727 * 3 2 1 5 5 H 1.48497 * 109.47219 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47327 * 120.00084 * 3 2 1 7 7 C 1.37881 * 119.99532 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99636 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00096 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.46913 * 179.97438 * 9 7 2 11 11 H 1.09004 * 109.47539 * 304.99430 * 10 9 7 12 12 N 1.46905 * 109.47613 * 64.99945 * 10 9 7 13 13 C 1.50701 * 109.47224 * 184.99921 * 10 9 7 14 14 C 1.30679 * 118.33203 * 114.99644 * 13 10 9 15 15 C 1.50446 * 122.49674 * 180.41331 * 14 13 10 16 16 C 1.53245 * 109.44099 * 342.51782 * 15 14 13 17 17 C 1.53505 * 108.15965 * 46.82569 * 16 15 14 18 18 O 1.35144 * 118.32422 * 294.97774 * 13 10 9 19 19 H 0.97009 * 119.99361 * 0.02562 * 1 2 3 20 20 H 1.08999 * 109.47058 * 59.99543 * 9 7 2 21 21 H 1.09004 * 109.46769 * 299.99182 * 9 7 2 22 22 H 1.00903 * 110.99385 * 296.04611 * 12 10 9 23 23 H 1.00893 * 110.99926 * 59.99793 * 12 10 9 24 24 H 1.08001 * 118.75000 * 0.69552 * 14 13 10 25 25 H 1.09000 * 109.47511 * 102.50820 * 15 14 13 26 26 H 1.08997 * 109.47384 * 222.52150 * 15 14 13 27 27 H 1.08998 * 109.72795 * 166.48640 * 16 15 14 28 28 H 1.08998 * 109.72599 * 287.11324 * 16 15 14 29 29 H 1.08995 * 109.71033 * 57.28677 * 17 16 15 30 30 H 1.08996 * 109.70762 * 177.87528 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2450 -3.6621 0.0005 11 1 2.9292 -3.5554 -0.8413 12 7 3.0082 -3.6541 1.2558 13 6 1.4956 -4.9637 -0.1233 14 6 1.6767 -5.6837 -1.1987 15 6 0.9702 -6.9928 -1.4233 16 6 0.4180 -7.5097 -0.0906 17 6 -0.2948 -6.3476 0.6150 18 8 0.6708 -5.3270 0.8837 19 1 -0.4850 0.8402 -0.0004 20 1 0.6245 -2.5571 -0.8896 21 1 0.6240 -2.5567 0.8904 22 1 3.5700 -2.8193 1.3319 23 1 2.3960 -3.7518 2.0517 24 1 2.3631 -5.3277 -1.9527 25 1 0.1488 -6.8467 -2.1249 26 1 1.6724 -7.7193 -1.8321 27 1 -0.2898 -8.3180 -0.2742 28 1 1.2367 -7.8719 0.5312 29 1 -1.0787 -5.9511 -0.0302 30 1 -0.7307 -6.6975 1.5507 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260933727.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:09 Heat of formation + Delta-G solvation = -65.504578 kcal Electronic energy + Delta-G solvation = -12633.861142 eV Core-core repulsion = 10427.838160 eV Total energy + Delta-G solvation = -2206.022982 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.05740 -37.20909 -34.78124 -34.55716 -31.87525 -29.93234 -27.13571 -25.67563 -24.19494 -21.88460 -19.89661 -18.66676 -17.45727 -16.67786 -16.60774 -16.45203 -15.55674 -14.93847 -14.83777 -14.36075 -14.14116 -13.82308 -13.54829 -13.41582 -12.81576 -12.63283 -12.29646 -11.98154 -11.74570 -11.57775 -11.41173 -11.12568 -10.62842 -9.56596 -9.07094 -8.23528 -6.36902 1.37692 1.41256 1.42279 1.50375 2.38022 2.56872 3.09214 3.75408 3.88328 4.04951 4.11777 4.34621 4.46794 4.60014 4.65511 4.72392 4.80631 4.88547 4.99921 5.24038 5.28510 5.43314 5.52034 5.62792 5.72147 6.11650 6.31001 6.68616 6.78802 6.82362 7.33120 8.87729 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.063304 B = 0.008334 C = 0.008105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.206968 B = 3358.945995 C = 3453.854791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.969 3.031 4 H -0.267 1.267 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.541 4.541 8 H 0.068 0.932 9 C 0.012 3.988 10 C 0.143 3.857 11 H 0.085 0.915 12 N -0.825 5.825 13 C 0.093 3.907 14 C -0.294 4.294 15 C -0.075 4.075 16 C -0.151 4.151 17 C 0.046 3.954 18 O -0.337 6.337 19 H 0.263 0.737 20 H -0.016 1.016 21 H -0.009 1.009 22 H 0.345 0.655 23 H 0.336 0.664 24 H 0.116 0.884 25 H 0.072 0.928 26 H 0.090 0.910 27 H 0.108 0.892 28 H 0.071 0.929 29 H 0.054 0.946 30 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.372 -12.049 -0.419 12.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.793 3.207 4 H -0.192 1.192 5 H -0.211 1.211 6 H -0.188 1.188 7 C -0.579 4.579 8 H 0.086 0.914 9 C -0.027 4.027 10 C 0.031 3.969 11 H 0.103 0.897 12 N -0.353 5.353 13 C 0.047 3.953 14 C -0.314 4.314 15 C -0.112 4.112 16 C -0.188 4.188 17 C -0.028 4.028 18 O -0.251 6.251 19 H 0.072 0.928 20 H 0.003 0.997 21 H 0.009 0.991 22 H 0.158 0.842 23 H 0.148 0.852 24 H 0.134 0.866 25 H 0.091 0.909 26 H 0.109 0.891 27 H 0.126 0.874 28 H 0.090 0.910 29 H 0.073 0.927 30 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.580 -12.528 -0.506 12.637 hybrid contribution -0.599 1.891 -0.082 1.985 sum 0.981 -10.637 -0.588 10.698 Atomic orbital electron populations 1.70123 1.08012 1.27887 1.51145 1.26010 0.95712 1.03515 0.94470 0.85440 0.78154 0.77774 0.79309 1.19160 1.21132 1.18850 1.21526 0.93581 0.91608 1.51211 0.91378 1.19610 0.94616 0.93615 0.94825 1.20505 0.93233 0.89012 0.94138 0.89668 1.59211 1.27448 1.45178 1.03490 1.20553 0.91633 0.94150 0.88928 1.22440 1.08831 1.00030 1.00146 1.20360 0.99631 0.93662 0.97580 1.22212 1.01540 0.98112 0.96922 1.23270 0.89535 0.87276 1.02723 1.85822 1.46185 1.56246 1.36871 0.92782 0.99745 0.99058 0.84189 0.85226 0.86640 0.90924 0.89125 0.87363 0.91041 0.92730 0.85972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.18 13.29 21.45 0.28 -56.89 16 2 C 0.00 0.07 5.46 84.66 0.46 0.53 16 3 Si 0.97 43.99 29.54 68.60 2.03 46.01 16 4 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 5 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.26 -11.39 7.11 99.48 0.71 -10.69 16 7 C -0.54 -30.37 8.55 25.60 0.22 -30.15 16 8 H 0.07 3.58 7.14 -2.91 -0.02 3.56 16 9 C 0.01 0.65 4.58 29.85 0.14 0.79 16 10 C 0.14 6.32 3.02 44.17 0.13 6.45 16 11 H 0.09 3.73 7.63 -2.39 -0.02 3.71 16 12 N -0.83 -33.42 9.18 -171.80 -1.58 -34.99 16 13 C 0.09 3.71 5.50 25.98 0.14 3.85 16 14 C -0.29 -10.11 9.55 25.90 0.25 -9.87 16 15 C -0.08 -1.92 6.23 29.85 0.19 -1.74 16 16 C -0.15 -3.41 6.24 30.85 0.19 -3.21 16 17 C 0.05 1.30 7.09 72.15 0.51 1.81 16 18 O -0.34 -12.97 9.99 -84.22 -0.84 -13.81 16 19 H 0.26 15.22 8.31 -92.70 -0.77 14.45 16 20 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 21 H -0.01 -0.54 8.14 -2.38 -0.02 -0.56 16 22 H 0.34 13.76 7.90 -89.69 -0.71 13.05 16 23 H 0.34 13.70 8.72 -89.70 -0.78 12.92 16 24 H 0.12 3.89 7.66 -2.91 -0.02 3.87 16 25 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.12 2.71 8.14 -2.39 -0.02 2.69 16 Total: -1.00 -65.48 252.04 1.77 -63.71 By element: Atomic # 1 Polarization: 27.87 SS G_CDS: -0.36 Total: 27.51 kcal Atomic # 6 Polarization: -33.77 SS G_CDS: 2.23 Total: -31.54 kcal Atomic # 7 Polarization: -90.59 SS G_CDS: -1.29 Total: -91.88 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: -0.84 Total: -13.81 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Total: -65.48 1.77 -63.71 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260933727.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.791 kcal (2) G-P(sol) polarization free energy of solvation -65.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds