Wall clock time and date at job start Mon Mar 30 2020 02:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86793 * 120.00669 * 2 1 4 4 H 1.48497 * 109.47576 * 240.00353 * 3 2 1 5 5 H 1.48503 * 109.46746 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47060 * 120.00149 * 3 2 1 7 7 C 1.37884 * 119.99354 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99882 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00008 * 359.97438 * 7 2 1 10 10 H 1.09003 * 110.59269 * 303.00099 * 9 7 2 11 11 C 1.55092 * 110.83406 * 66.02793 * 9 7 2 12 12 C 1.54598 * 102.84998 * 155.84849 * 11 9 7 13 13 C 1.54000 * 105.22213 * 338.15300 * 12 11 9 14 14 N 1.47897 * 107.05672 * 358.72428 * 13 12 11 15 15 C 1.46906 * 110.99555 * 145.84575 * 14 13 12 16 16 C 1.54031 * 113.81907 * 33.63332 * 15 14 13 17 17 O 1.44445 * 85.42663 * 223.23745 * 16 15 14 18 18 C 1.44179 * 93.37675 * 24.08601 * 17 16 15 19 19 H 0.96998 * 119.99200 * 359.97438 * 1 2 3 20 20 H 1.09003 * 110.70966 * 37.53848 * 11 9 7 21 21 H 1.09003 * 110.81580 * 274.20940 * 11 9 7 22 22 H 1.09002 * 110.31193 * 219.18658 * 12 11 9 23 23 H 1.09000 * 110.30788 * 97.11602 * 12 11 9 24 24 H 1.09000 * 109.91521 * 118.07714 * 13 12 11 25 25 H 1.09002 * 109.91162 * 239.17394 * 13 12 11 26 26 H 1.09006 * 112.99490 * 165.45906 * 15 14 13 27 27 H 1.09004 * 113.86123 * 337.34019 * 16 15 14 28 28 H 1.08995 * 113.87125 * 109.04693 * 16 15 14 29 29 H 1.09003 * 113.86379 * 221.76672 * 18 17 16 30 30 H 1.08998 * 113.98619 * 90.08177 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2844 2.7464 0.0006 6 1 3.1031 1.6961 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1943 -0.0010 9 6 1.2508 -2.4992 -0.0005 10 1 0.5782 -2.5534 0.8555 11 6 0.4645 -2.6820 -1.3247 12 6 0.3075 -4.2169 -1.4223 13 6 1.4283 -4.7950 -0.5384 14 7 2.1921 -3.6482 -0.0011 15 6 2.6799 -3.9299 1.3556 16 6 3.0439 -5.4079 1.5914 17 8 2.3642 -5.2534 2.8565 18 6 1.5573 -4.1552 2.3859 19 1 -0.4849 0.8401 0.0004 20 1 1.0371 -2.2985 -2.1692 21 1 -0.5102 -2.1975 -1.2665 22 1 0.4320 -4.5452 -2.4542 23 1 -0.6681 -4.5222 -1.0439 24 1 0.9961 -5.3698 0.2807 25 1 2.0805 -5.4323 -1.1356 26 1 3.4469 -3.2295 1.6864 27 1 2.5505 -6.0981 0.9071 28 1 4.1147 -5.5891 1.6839 29 1 1.4516 -3.3448 3.1072 30 1 0.6083 -4.4597 1.9446 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260979594.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:15 Heat of formation + Delta-G solvation = -23.383323 kcal Electronic energy + Delta-G solvation = -13163.686815 eV Core-core repulsion = 10959.490348 eV Total energy + Delta-G solvation = -2204.196467 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.81392 -38.61951 -34.66585 -32.57071 -30.27280 -28.00834 -27.50824 -26.28301 -23.02494 -21.55830 -19.91006 -18.42061 -18.02887 -17.30070 -16.68573 -16.34875 -15.81533 -14.95597 -14.42512 -14.11984 -13.71176 -13.60146 -13.10406 -12.81069 -12.65615 -12.41206 -12.28563 -12.18662 -11.79192 -11.45160 -11.30373 -10.94069 -10.67063 -10.49606 -8.97087 -8.13074 -6.20686 1.43019 1.43950 1.51651 2.42690 2.67678 3.17261 3.23826 3.60678 4.01092 4.06173 4.11405 4.29093 4.30099 4.42730 4.61538 4.70985 4.90212 4.95197 5.02741 5.08694 5.14299 5.19315 5.36760 5.54792 5.63851 5.72140 6.14403 6.37292 6.55376 6.89919 7.47024 8.95497 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.039170 B = 0.012618 C = 0.010683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.659125 B = 2218.524327 C = 2620.388649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.014 3.986 3 Si 0.956 3.044 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.516 4.516 8 H 0.052 0.948 9 C 0.206 3.794 10 H -0.008 1.008 11 C -0.100 4.100 12 C -0.129 4.129 13 C 0.031 3.969 14 N -0.521 5.521 15 C 0.023 3.977 16 C 0.039 3.961 17 O -0.400 6.400 18 C 0.008 3.992 19 H 0.261 0.739 20 H 0.039 0.961 21 H 0.046 0.954 22 H 0.079 0.921 23 H 0.064 0.936 24 H 0.046 0.954 25 H 0.090 0.910 26 H 0.098 0.902 27 H 0.101 0.899 28 H 0.113 0.887 29 H 0.082 0.918 30 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.654 -8.377 -0.042 8.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.185 4.185 3 Si 0.782 3.218 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.554 4.554 8 H 0.070 0.930 9 C 0.100 3.900 10 H 0.010 0.990 11 C -0.140 4.140 12 C -0.167 4.167 13 C -0.097 4.097 14 N -0.245 5.245 15 C -0.087 4.087 16 C -0.037 4.037 17 O -0.318 6.318 18 C -0.071 4.071 19 H 0.070 0.930 20 H 0.058 0.942 21 H 0.064 0.936 22 H 0.098 0.902 23 H 0.083 0.917 24 H 0.064 0.936 25 H 0.108 0.892 26 H 0.116 0.884 27 H 0.119 0.881 28 H 0.131 0.869 29 H 0.100 0.900 30 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.991 -8.296 -0.102 8.819 hybrid contribution -0.562 1.173 0.470 1.383 sum 2.428 -7.123 0.368 7.534 Atomic orbital electron populations 1.70056 1.07071 1.27400 1.51499 1.25662 0.95654 1.02184 0.94974 0.85647 0.78338 0.79097 0.78760 1.19780 1.21026 1.19814 1.21221 0.93058 0.90980 1.50155 0.92972 1.20140 0.88837 0.88199 0.92863 0.99001 1.22276 0.99137 0.94114 0.98439 1.22457 0.98057 0.95652 1.00529 1.22993 0.95146 0.93773 0.97788 1.64659 1.35743 1.04728 1.19417 1.25027 0.97148 0.97854 0.88679 1.24560 1.00067 0.94843 0.84278 1.89615 1.56098 1.54249 1.31837 1.24465 0.96050 0.89093 0.97457 0.92986 0.94220 0.93570 0.90201 0.91738 0.93579 0.89183 0.88360 0.88121 0.86901 0.89964 0.90567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.69 12.40 21.45 0.27 -52.42 16 2 C 0.01 0.79 5.36 84.66 0.45 1.24 16 3 Si 0.96 43.70 29.54 68.60 2.03 45.73 16 4 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 6 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 7 C -0.52 -28.28 8.69 25.60 0.22 -28.06 16 8 H 0.05 2.89 7.81 -2.91 -0.02 2.87 16 9 C 0.21 10.14 2.02 44.57 0.09 10.23 16 10 H -0.01 -0.41 6.58 -2.39 -0.02 -0.42 16 11 C -0.10 -4.65 5.96 31.85 0.19 -4.46 16 12 C -0.13 -4.52 6.92 31.48 0.22 -4.30 16 13 C 0.03 1.02 4.97 86.45 0.43 1.45 16 14 N -0.52 -21.34 5.21 -873.08 -4.55 -25.89 16 15 C 0.02 0.85 4.38 45.61 0.20 1.05 16 16 C 0.04 1.14 8.39 72.29 0.61 1.74 16 17 O -0.40 -13.86 12.46 -148.98 -1.86 -15.72 16 18 C 0.01 0.29 7.07 72.29 0.51 0.80 16 19 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 20 H 0.04 1.92 8.05 -2.39 -0.02 1.90 16 21 H 0.05 2.31 7.66 -2.39 -0.02 2.30 16 22 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 23 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 24 H 0.05 1.44 5.15 -2.39 -0.01 1.43 16 25 H 0.09 2.57 8.08 -2.39 -0.02 2.55 16 26 H 0.10 3.87 8.14 -2.38 -0.02 3.85 16 27 H 0.10 2.61 5.84 -2.38 -0.01 2.59 16 28 H 0.11 2.74 8.14 -2.39 -0.02 2.72 16 29 H 0.08 3.10 8.14 -2.39 -0.02 3.08 16 30 H 0.08 2.80 6.59 -2.39 -0.02 2.78 16 Total: -1.00 -59.91 239.47 -0.07 -59.98 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: 1.12 Total: 8.62 kcal Atomic # 6 Polarization: -23.22 SS G_CDS: 2.92 Total: -20.30 kcal Atomic # 7 Polarization: -74.04 SS G_CDS: -4.28 Total: -78.32 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: -1.86 Total: -15.72 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -59.91 -0.07 -59.98 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260979594.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.599 kcal (2) G-P(sol) polarization free energy of solvation -59.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds