Wall clock time and date at job start Mon Mar 30 2020 02:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 119.99979 * 2 1 4 4 H 1.48505 * 109.46712 * 269.99721 * 3 2 1 5 5 H 1.48497 * 109.47210 * 29.99667 * 3 2 1 6 6 H 1.48500 * 109.47090 * 149.99839 * 3 2 1 7 7 C 1.37883 * 119.99659 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99643 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00048 * 0.02562 * 7 2 1 10 10 C 1.53512 * 114.16697 * 179.97438 * 9 7 2 11 11 N 1.47486 * 87.92942 * 139.67333 * 10 9 7 12 12 C 1.46908 * 110.99674 * 221.29602 * 11 10 9 13 13 C 1.53007 * 109.46596 * 169.99838 * 12 11 10 14 14 C 1.54032 * 113.81624 * 271.19101 * 13 12 11 15 15 O 1.44182 * 85.51524 * 223.19594 * 14 13 12 16 16 C 1.44184 * 93.33876 * 24.19656 * 15 14 13 17 17 C 1.47480 * 87.83684 * 332.98797 * 11 10 9 18 18 H 0.96998 * 119.99675 * 0.02562 * 1 2 3 19 19 H 1.09001 * 113.38579 * 46.92342 * 9 7 2 20 20 H 1.09000 * 113.47995 * 24.90766 * 10 9 7 21 21 H 1.09003 * 113.48039 * 254.43536 * 10 9 7 22 22 H 1.08993 * 109.47262 * 290.00218 * 12 11 10 23 23 H 1.08997 * 109.46666 * 50.00549 * 12 11 10 24 24 H 1.09004 * 112.99753 * 43.17657 * 13 12 11 25 25 H 1.08999 * 113.86174 * 337.33953 * 14 13 12 26 26 H 1.08994 * 113.86351 * 109.05149 * 14 13 12 27 27 H 1.09007 * 113.86144 * 221.66342 * 16 15 14 28 28 H 1.09000 * 113.86992 * 89.95406 * 16 15 14 29 29 H 1.09004 * 113.47564 * 141.77140 * 17 11 10 30 30 H 1.08993 * 113.47671 * 272.24568 * 17 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.1496 -3.7438 0.0005 11 7 1.2074 -4.3583 0.9544 12 6 1.9259 -5.0863 2.0089 13 6 0.9422 -5.4949 3.1073 14 6 0.7655 -4.4342 4.2102 15 8 0.8324 -5.5428 5.1296 16 6 1.5682 -6.3721 4.2079 17 6 0.8554 -2.9966 1.3979 18 1 -0.4849 0.8401 -0.0004 19 1 0.4432 -2.5323 -0.7306 20 1 3.1390 -3.5651 0.4216 21 1 2.1864 -4.2529 -0.9626 22 1 2.3880 -5.9777 1.5849 23 1 2.6974 -4.4437 2.4329 24 1 0.0031 -5.8849 2.7145 25 1 1.6026 -3.7411 4.2935 26 1 -0.2033 -3.9351 4.1908 27 1 1.2358 -7.4101 4.1868 28 1 2.6503 -6.2707 4.2905 29 1 -0.2047 -2.8724 1.6190 30 1 1.4994 -2.6185 2.1918 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261011875.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:25 Heat of formation + Delta-G solvation = 18.777736 kcal Electronic energy + Delta-G solvation = -12628.101381 eV Core-core repulsion = 10425.733154 eV Total energy + Delta-G solvation = -2202.368226 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.33685 -38.60100 -32.92135 -31.46521 -27.93181 -26.46446 -25.18821 -24.61031 -22.06450 -19.94939 -18.56400 -16.75419 -16.30721 -15.60411 -15.38999 -14.78753 -14.36962 -13.92276 -13.40222 -12.57027 -12.31636 -12.00987 -11.68344 -11.29213 -11.06920 -10.85229 -10.83951 -10.42346 -10.10855 -9.69807 -9.51572 -9.17553 -8.95785 -8.46181 -8.03105 -6.07956 -4.12653 3.26982 3.34209 3.36557 3.84266 4.35108 4.40903 4.83600 5.13645 5.22202 5.34645 5.43172 5.53441 5.63048 5.85272 5.91968 6.05129 6.18482 6.23570 6.31671 6.40045 6.46503 6.65080 6.71660 7.10564 7.13578 7.69814 7.88584 8.05221 8.34747 8.90586 9.52519 11.01605 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.053138 B = 0.008421 C = 0.007914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.798990 B = 3324.326852 C = 3537.237950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.067 3.933 3 Si 0.891 3.109 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.518 4.518 8 H 0.057 0.943 9 C 0.041 3.959 10 C -0.006 4.006 11 N -0.485 5.485 12 C 0.023 3.977 13 C -0.144 4.144 14 C 0.040 3.960 15 O -0.389 6.389 16 C 0.037 3.963 17 C 0.005 3.995 18 H 0.262 0.738 19 H 0.064 0.936 20 H 0.053 0.947 21 H 0.061 0.939 22 H 0.068 0.932 23 H 0.039 0.961 24 H 0.107 0.893 25 H 0.080 0.920 26 H 0.092 0.908 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.063 0.937 30 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.014 -8.260 5.045 10.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.136 4.136 3 Si 0.718 3.282 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.556 4.556 8 H 0.075 0.925 9 C 0.022 3.978 10 C -0.135 4.135 11 N -0.207 5.207 12 C -0.106 4.106 13 C -0.163 4.163 14 C -0.037 4.037 15 O -0.308 6.308 16 C -0.040 4.040 17 C -0.124 4.124 18 H 0.072 0.928 19 H 0.082 0.918 20 H 0.071 0.929 21 H 0.080 0.920 22 H 0.087 0.913 23 H 0.057 0.943 24 H 0.125 0.875 25 H 0.098 0.902 26 H 0.110 0.890 27 H 0.106 0.894 28 H 0.095 0.905 29 H 0.081 0.919 30 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.244 -8.675 5.110 10.315 hybrid contribution 1.192 1.409 0.261 1.864 sum 3.436 -7.266 5.371 9.667 Atomic orbital electron populations 1.69969 1.05983 1.26776 1.49565 1.25020 0.94828 0.99162 0.94580 0.86619 0.79874 0.83438 0.78222 1.20523 1.21156 1.19899 1.21038 0.92741 0.90299 1.51526 0.92461 1.20101 0.94283 0.90816 0.92611 1.24011 0.95737 0.97776 0.95992 1.68907 1.27316 1.14380 1.10130 1.22643 0.95230 0.99225 0.93519 1.24269 1.00877 0.95971 0.95173 1.24090 1.02774 0.90620 0.86176 1.89629 1.74589 1.27257 1.39335 1.23971 0.96680 0.96309 0.87053 1.24028 1.00058 0.86926 1.01354 0.92834 0.91810 0.92855 0.92024 0.91330 0.94270 0.87480 0.90165 0.89010 0.89439 0.90462 0.91866 0.92958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.33 13.26 55.43 0.74 -24.60 16 2 C 0.07 1.83 5.46 -17.81 -0.10 1.74 16 3 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.52 -13.97 8.82 -34.44 -0.30 -14.27 16 8 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 9 C 0.04 1.02 3.77 -91.24 -0.34 0.67 16 10 C -0.01 -0.13 7.27 -7.54 -0.05 -0.19 16 11 N -0.49 -9.60 6.41 -244.60 -1.57 -11.17 16 12 C 0.02 0.37 4.74 -3.82 -0.02 0.35 16 13 C -0.14 -2.11 3.96 -89.54 -0.35 -2.47 16 14 C 0.04 0.61 7.72 37.61 0.29 0.90 16 15 O -0.39 -6.11 12.45 -35.23 -0.44 -6.54 16 16 C 0.04 0.47 8.79 37.61 0.33 0.80 16 17 C 0.01 0.12 6.18 -7.54 -0.05 0.07 16 18 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 19 H 0.06 1.74 8.11 -51.93 -0.42 1.32 16 20 H 0.05 1.09 7.72 -51.93 -0.40 0.69 16 21 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 22 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 23 H 0.04 0.65 7.25 -51.93 -0.38 0.27 16 24 H 0.11 1.62 8.14 -51.93 -0.42 1.20 16 25 H 0.08 1.21 7.83 -51.93 -0.41 0.80 16 26 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 27 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.08 0.87 8.10 -51.93 -0.42 0.45 16 29 H 0.06 1.47 8.14 -51.93 -0.42 1.04 16 30 H 0.05 1.17 7.37 -51.93 -0.38 0.78 16 LS Contribution 251.06 15.07 3.78 3.78 Total: -1.00 -28.45 251.06 -7.60 -36.05 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: -4.49 Total: -0.97 kcal Atomic # 6 Polarization: -11.80 SS G_CDS: -0.60 Total: -12.40 kcal Atomic # 7 Polarization: -34.94 SS G_CDS: -0.83 Total: -35.77 kcal Atomic # 8 Polarization: -6.11 SS G_CDS: -0.44 Total: -6.54 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -28.45 -7.60 -36.05 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261011875.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.824 kcal (2) G-P(sol) polarization free energy of solvation -28.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds