Wall clock time and date at job start Mon Mar 30 2020 02:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 119.99979 * 2 1 4 4 H 1.48505 * 109.46712 * 269.99721 * 3 2 1 5 5 H 1.48497 * 109.47210 * 29.99667 * 3 2 1 6 6 H 1.48500 * 109.47090 * 149.99839 * 3 2 1 7 7 C 1.37883 * 119.99659 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99643 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00048 * 0.02562 * 7 2 1 10 10 C 1.53512 * 114.16697 * 179.97438 * 9 7 2 11 11 N 1.47486 * 87.92942 * 139.67333 * 10 9 7 12 12 C 1.46908 * 110.99674 * 221.29602 * 11 10 9 13 13 C 1.53007 * 109.46596 * 169.99838 * 12 11 10 14 14 C 1.54032 * 113.81624 * 271.19101 * 13 12 11 15 15 O 1.44182 * 85.51524 * 223.19594 * 14 13 12 16 16 C 1.44184 * 93.33876 * 24.19656 * 15 14 13 17 17 C 1.47480 * 87.83684 * 332.98797 * 11 10 9 18 18 H 0.96998 * 119.99675 * 0.02562 * 1 2 3 19 19 H 1.09001 * 113.38579 * 46.92342 * 9 7 2 20 20 H 1.09000 * 113.47995 * 24.90766 * 10 9 7 21 21 H 1.09003 * 113.48039 * 254.43536 * 10 9 7 22 22 H 1.08993 * 109.47262 * 290.00218 * 12 11 10 23 23 H 1.08997 * 109.46666 * 50.00549 * 12 11 10 24 24 H 1.09004 * 112.99753 * 43.17657 * 13 12 11 25 25 H 1.08999 * 113.86174 * 337.33953 * 14 13 12 26 26 H 1.08994 * 113.86351 * 109.05149 * 14 13 12 27 27 H 1.09007 * 113.86144 * 221.66342 * 16 15 14 28 28 H 1.09000 * 113.86992 * 89.95406 * 16 15 14 29 29 H 1.09004 * 113.47564 * 141.77140 * 17 11 10 30 30 H 1.08993 * 113.47671 * 272.24568 * 17 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.1496 -3.7438 0.0005 11 7 1.2074 -4.3583 0.9544 12 6 1.9259 -5.0863 2.0089 13 6 0.9422 -5.4949 3.1073 14 6 0.7655 -4.4342 4.2102 15 8 0.8324 -5.5428 5.1296 16 6 1.5682 -6.3721 4.2079 17 6 0.8554 -2.9966 1.3979 18 1 -0.4849 0.8401 -0.0004 19 1 0.4432 -2.5323 -0.7306 20 1 3.1390 -3.5651 0.4216 21 1 2.1864 -4.2529 -0.9626 22 1 2.3880 -5.9777 1.5849 23 1 2.6974 -4.4437 2.4329 24 1 0.0031 -5.8849 2.7145 25 1 1.6026 -3.7411 4.2935 26 1 -0.2033 -3.9351 4.1908 27 1 1.2358 -7.4101 4.1868 28 1 2.6503 -6.2707 4.2905 29 1 -0.2047 -2.8724 1.6190 30 1 1.4994 -2.6185 2.1918 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261011875.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:25 Heat of formation + Delta-G solvation = -2.014549 kcal Electronic energy + Delta-G solvation = -12629.003002 eV Core-core repulsion = 10425.733154 eV Total energy + Delta-G solvation = -2203.269848 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.58777 -40.20171 -34.85320 -32.97297 -29.57992 -27.61356 -26.92900 -26.31596 -23.68739 -21.14948 -20.36038 -18.68495 -17.49838 -16.88453 -16.78170 -16.46378 -16.10760 -15.57361 -14.88646 -14.00994 -13.76543 -13.64116 -13.27517 -12.95390 -12.76856 -12.63290 -12.33280 -12.15031 -11.52239 -11.32340 -11.03434 -10.82262 -10.64779 -10.48965 -9.69105 -8.15546 -6.26909 1.42659 1.43425 1.53497 2.42096 2.73008 3.13670 3.16855 3.45332 3.85299 4.18851 4.25120 4.30153 4.37982 4.48122 4.56113 4.63507 4.68770 4.77441 4.90677 4.97853 5.04736 5.14384 5.23211 5.25568 5.48500 5.62527 5.85121 6.29647 6.40570 6.82713 7.41761 8.94165 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.053138 B = 0.008421 C = 0.007914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.798990 B = 3324.326852 C = 3537.237950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.015 3.985 3 Si 0.957 3.043 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.265 1.265 7 C -0.532 4.532 8 H 0.060 0.940 9 C 0.017 3.983 10 C 0.008 3.992 11 N -0.485 5.485 12 C 0.024 3.976 13 C -0.144 4.144 14 C 0.035 3.965 15 O -0.409 6.409 16 C 0.047 3.953 17 C 0.021 3.979 18 H 0.263 0.737 19 H 0.029 0.971 20 H 0.063 0.937 21 H 0.073 0.927 22 H 0.092 0.908 23 H 0.040 0.960 24 H 0.101 0.899 25 H 0.081 0.919 26 H 0.084 0.916 27 H 0.112 0.888 28 H 0.096 0.904 29 H 0.045 0.955 30 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.482 -9.056 5.581 11.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.184 4.184 3 Si 0.782 3.218 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.189 1.189 7 C -0.570 4.570 8 H 0.078 0.922 9 C -0.002 4.002 10 C -0.120 4.120 11 N -0.207 5.207 12 C -0.104 4.104 13 C -0.162 4.162 14 C -0.042 4.042 15 O -0.328 6.328 16 C -0.029 4.029 17 C -0.108 4.108 18 H 0.071 0.929 19 H 0.047 0.953 20 H 0.081 0.919 21 H 0.092 0.908 22 H 0.110 0.890 23 H 0.059 0.941 24 H 0.119 0.881 25 H 0.099 0.901 26 H 0.102 0.898 27 H 0.130 0.870 28 H 0.114 0.886 29 H 0.063 0.937 30 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.727 -9.490 5.645 11.655 hybrid contribution 0.728 1.589 0.082 1.750 sum 4.455 -7.901 5.727 10.728 Atomic orbital electron populations 1.70095 1.07524 1.27579 1.50827 1.25827 0.95598 1.02684 0.94336 0.85579 0.78758 0.79109 0.78367 1.19987 1.21020 1.18939 1.21388 0.93029 0.91479 1.51073 0.92223 1.20072 0.94567 0.92144 0.93385 1.23841 0.95449 0.95698 0.97060 1.68838 1.27852 1.12946 1.11057 1.22721 0.95315 0.99510 0.92893 1.24241 1.00621 0.96471 0.94909 1.24099 1.02465 0.90894 0.86693 1.89615 1.75310 1.27738 1.40157 1.24171 0.97481 0.96855 0.84437 1.23715 0.98874 0.88509 0.99700 0.92856 0.95325 0.91906 0.90816 0.88960 0.94124 0.88057 0.90144 0.89755 0.87024 0.88627 0.93676 0.93006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.73 13.26 21.45 0.28 -53.44 16 2 C 0.01 0.82 5.46 84.66 0.46 1.28 16 3 Si 0.96 42.76 29.54 68.60 2.03 44.79 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 6 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 7 C -0.53 -28.75 8.82 25.60 0.23 -28.52 16 8 H 0.06 3.12 7.81 -2.91 -0.02 3.10 16 9 C 0.02 0.87 3.77 -11.20 -0.04 0.83 16 10 C 0.01 0.33 7.27 83.58 0.61 0.94 16 11 N -0.48 -18.58 6.41 -927.79 -5.95 -24.53 16 12 C 0.02 0.72 4.74 86.30 0.41 1.13 16 13 C -0.14 -3.92 3.96 -10.09 -0.04 -3.96 16 14 C 0.04 1.03 7.72 72.27 0.56 1.59 16 15 O -0.41 -12.07 12.45 -148.98 -1.86 -13.92 16 16 C 0.05 1.05 8.79 72.27 0.63 1.68 16 17 C 0.02 0.95 6.18 83.58 0.52 1.47 16 18 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 19 H 0.03 1.62 8.11 -2.39 -0.02 1.60 16 20 H 0.06 2.42 7.72 -2.39 -0.02 2.41 16 21 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 22 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 23 H 0.04 1.23 7.25 -2.39 -0.02 1.21 16 24 H 0.10 2.90 8.14 -2.38 -0.02 2.88 16 25 H 0.08 2.34 7.83 -2.39 -0.02 2.32 16 26 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 27 H 0.11 1.95 8.14 -2.38 -0.02 1.93 16 28 H 0.10 1.79 8.10 -2.39 -0.02 1.77 16 29 H 0.04 2.15 8.14 -2.38 -0.02 2.13 16 30 H 0.05 2.30 7.37 -2.39 -0.02 2.28 16 Total: -1.00 -60.34 251.06 -1.06 -61.40 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: 1.10 Total: 9.25 kcal Atomic # 6 Polarization: -26.88 SS G_CDS: 3.33 Total: -23.55 kcal Atomic # 7 Polarization: -72.31 SS G_CDS: -5.67 Total: -77.97 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: -1.86 Total: -13.92 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -60.34 -1.06 -61.40 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261011875.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.388 kcal (2) G-P(sol) polarization free energy of solvation -60.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds