Wall clock time and date at job start Mon Mar 30 2020 02:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 120.00117 * 2 1 4 4 H 1.48498 * 109.46948 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46890 * 300.00006 * 3 2 1 6 6 H 1.48501 * 109.47050 * 60.00027 * 3 2 1 7 7 C 1.38812 * 119.99779 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99768 * 167.82250 * 7 2 1 9 9 N 1.36942 * 120.00001 * 347.81534 * 7 2 1 10 10 C 1.46493 * 120.00047 * 308.08141 * 9 7 2 11 11 C 1.52999 * 117.50131 * 1.87265 * 10 9 7 12 12 C 1.53005 * 117.50016 * 293.21504 * 10 9 7 13 13 C 1.46496 * 119.99437 * 128.07976 * 9 7 2 14 14 H 1.09002 * 110.45364 * 182.60790 * 13 9 7 15 15 C 1.54511 * 110.51330 * 60.00312 * 13 9 7 16 16 C 1.54477 * 104.18291 * 241.14445 * 15 13 9 17 17 O 1.44646 * 104.69835 * 336.18892 * 16 15 13 18 18 C 1.44429 * 105.36749 * 40.34610 * 17 16 15 19 19 H 0.97000 * 119.99821 * 355.29838 * 1 2 3 20 20 H 1.09004 * 115.55154 * 147.54833 * 10 9 7 21 21 H 1.08999 * 117.49817 * 359.97438 * 11 10 9 22 22 H 1.09004 * 117.50422 * 145.02184 * 11 10 9 23 23 H 1.09003 * 117.50095 * 214.98330 * 12 10 9 24 24 H 1.09007 * 117.49736 * 359.97438 * 12 10 9 25 25 H 1.08997 * 110.51157 * 359.85968 * 15 13 9 26 26 H 1.09006 * 110.51110 * 122.43598 * 15 13 9 27 27 H 1.09003 * 110.36932 * 94.92034 * 16 15 13 28 28 H 1.08997 * 110.37276 * 217.25839 * 16 15 13 29 29 H 1.09000 * 110.37026 * 200.73690 * 18 17 16 30 30 H 1.08997 * 110.37163 * 78.39909 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0720 -1.2126 -0.1978 9 7 1.3486 -2.3749 0.2492 10 6 0.5073 -2.5015 1.4418 11 6 0.3735 -1.2743 2.3457 12 6 1.2038 -2.4759 2.8038 13 6 1.4823 -3.5026 -0.6762 14 1 0.8576 -4.3358 -0.3541 15 6 2.9594 -3.9431 -0.7831 16 6 3.3107 -3.7311 -2.2724 17 8 2.0399 -3.7876 -2.9609 18 6 1.1134 -3.0737 -2.1137 19 1 -0.4850 0.8372 0.0689 20 1 -0.3657 -3.1455 1.3350 21 1 0.9119 -0.3728 2.0532 22 1 -0.5873 -1.1110 2.8339 23 1 0.7889 -3.1027 3.5932 24 1 2.2882 -2.3652 2.8125 25 1 3.5905 -3.3202 -0.1494 26 1 3.0653 -4.9935 -0.5116 27 1 3.7770 -2.7565 -2.4172 28 1 3.9707 -4.5243 -2.6233 29 1 0.0881 -3.3628 -2.3446 30 1 1.2414 -1.9979 -2.2333 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261034400.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:30 Heat of formation + Delta-G solvation = 5.860726 kcal Electronic energy + Delta-G solvation = -13274.909621 eV Core-core repulsion = 11071.981271 eV Total energy + Delta-G solvation = -2202.928350 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.59363 -36.53642 -32.82833 -31.73298 -29.22996 -27.24134 -24.40363 -21.91445 -20.99444 -20.25435 -19.66124 -16.39824 -15.76090 -15.38088 -14.64676 -14.22301 -14.10544 -13.44967 -12.80746 -12.29488 -11.73630 -11.54291 -11.21429 -10.93328 -10.88411 -10.50794 -10.30140 -10.19861 -10.10160 -9.72299 -9.31535 -8.95913 -8.87448 -8.21730 -6.41114 -5.77667 -3.65056 3.27429 3.37535 3.39351 4.34703 4.76377 5.16994 5.29979 5.37476 5.63502 5.66408 5.92378 6.17216 6.20846 6.23215 6.37217 6.48314 6.54556 6.61721 6.68993 6.71977 6.90854 6.99960 7.05964 7.26021 7.57650 7.66370 7.77379 8.55013 9.16506 9.66451 10.35814 11.11484 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.030407 B = 0.016618 C = 0.012827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.631225 B = 1684.468884 C = 2182.297995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.036 3.964 3 Si 0.886 3.114 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.277 4.277 8 H 0.055 0.945 9 N -0.544 5.544 10 C 0.148 3.852 11 C -0.148 4.148 12 C -0.246 4.246 13 C 0.151 3.849 14 H 0.060 0.940 15 C -0.166 4.166 16 C 0.053 3.947 17 O -0.396 6.396 18 C 0.037 3.963 19 H 0.255 0.745 20 H 0.077 0.923 21 H 0.107 0.893 22 H 0.063 0.937 23 H 0.064 0.936 24 H 0.079 0.921 25 H 0.080 0.920 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.610 -4.472 0.505 5.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.167 4.167 3 Si 0.714 3.286 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.407 4.407 8 H 0.073 0.927 9 N -0.262 5.262 10 C 0.040 3.960 11 C -0.187 4.187 12 C -0.286 4.286 13 C 0.043 3.957 14 H 0.078 0.922 15 C -0.206 4.206 16 C -0.024 4.024 17 O -0.315 6.315 18 C -0.041 4.041 19 H 0.065 0.935 20 H 0.094 0.906 21 H 0.125 0.875 22 H 0.081 0.919 23 H 0.082 0.918 24 H 0.098 0.902 25 H 0.099 0.901 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.407 -4.434 0.190 5.049 hybrid contribution 0.387 1.135 0.358 1.251 sum 2.794 -3.299 0.548 4.358 Atomic orbital electron populations 1.70123 1.05406 1.26033 1.48899 1.25509 0.95084 0.98751 0.97372 0.86526 0.80168 0.84305 0.77592 1.19821 1.21233 1.21110 1.18746 0.90775 0.83788 1.47355 0.92711 1.43196 1.53722 1.10202 1.19066 1.20669 0.93440 0.99337 0.82545 1.22946 0.98922 0.94397 1.02407 1.23524 0.99003 1.04751 1.01362 1.21677 0.93046 0.90647 0.90366 0.92214 1.23309 1.00416 1.00379 0.96512 1.23246 0.86988 1.00276 0.91922 1.88991 1.19938 1.76770 1.45840 1.23938 0.92000 0.98147 0.90013 0.93462 0.90558 0.87451 0.91851 0.91770 0.90223 0.90103 0.92539 0.92794 0.90871 0.90906 0.90042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.52 11.34 55.49 0.63 -22.89 16 2 C 0.04 0.95 3.20 -17.43 -0.06 0.89 16 3 Si 0.89 20.62 29.52 -169.99 -5.02 15.60 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.28 -7.12 6.94 -15.06 -0.10 -7.22 16 8 H 0.06 1.45 7.25 -52.49 -0.38 1.07 16 9 N -0.54 -13.00 2.63 -156.38 -0.41 -13.41 16 10 C 0.15 3.41 5.98 -67.93 -0.41 3.01 16 11 C -0.15 -3.42 8.26 -26.70 -0.22 -3.64 16 12 C -0.25 -5.14 10.38 -26.69 -0.28 -5.41 16 13 C 0.15 3.20 3.66 -66.36 -0.24 2.96 16 14 H 0.06 1.20 7.97 -51.93 -0.41 0.79 16 15 C -0.17 -3.13 6.53 -25.16 -0.16 -3.29 16 16 C 0.05 0.96 7.65 37.93 0.29 1.25 16 17 O -0.40 -8.18 11.65 -35.23 -0.41 -8.59 16 18 C 0.04 0.80 7.23 37.93 0.27 1.07 16 19 H 0.26 6.74 8.32 -40.82 -0.34 6.40 16 20 H 0.08 1.69 8.14 -51.93 -0.42 1.26 16 21 H 0.11 2.74 5.13 -51.93 -0.27 2.48 16 22 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 23 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 24 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 25 H 0.08 1.62 7.08 -51.93 -0.37 1.25 16 26 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 30 H 0.08 2.01 6.96 -51.93 -0.36 1.65 16 LS Contribution 244.15 15.07 3.68 3.68 Total: -1.00 -26.95 244.15 -6.75 -33.70 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -4.31 Total: 2.30 kcal Atomic # 6 Polarization: -9.48 SS G_CDS: -0.91 Total: -10.39 kcal Atomic # 7 Polarization: -36.52 SS G_CDS: 0.22 Total: -36.30 kcal Atomic # 8 Polarization: -8.18 SS G_CDS: -0.41 Total: -8.59 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -26.95 -6.75 -33.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261034400.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.561 kcal (2) G-P(sol) polarization free energy of solvation -26.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds