Wall clock time and date at job start Mon Mar 30 2020 02:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 119.99908 * 2 1 4 4 H 1.48497 * 109.47365 * 239.99821 * 3 2 1 5 5 H 1.48502 * 109.47201 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46967 * 119.99899 * 3 2 1 7 7 C 1.37882 * 120.00125 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99843 * 174.19424 * 7 2 1 9 9 C 1.50698 * 119.99783 * 354.19686 * 7 2 1 10 10 N 1.46906 * 110.45858 * 300.31042 * 9 7 2 11 11 C 1.46895 * 110.99812 * 300.94294 * 10 9 7 12 12 C 1.53005 * 117.49772 * 225.36009 * 11 10 9 13 13 C 1.53006 * 117.49872 * 156.69937 * 11 10 9 14 14 C 1.54510 * 110.51393 * 62.91439 * 9 7 2 15 15 C 1.54477 * 104.06116 * 118.78024 * 14 9 7 16 16 O 1.44429 * 104.80218 * 23.98160 * 15 14 9 17 17 C 1.44416 * 105.27608 * 319.48668 * 16 15 14 18 18 H 0.96998 * 119.99793 * 5.01302 * 1 2 3 19 19 H 1.00900 * 110.99770 * 64.89574 * 10 9 7 20 20 H 1.09003 * 115.55208 * 11.02933 * 11 10 9 21 21 H 1.08995 * 117.50039 * 359.97438 * 12 11 10 22 22 H 1.09000 * 117.50084 * 145.02231 * 12 11 10 23 23 H 1.09001 * 117.49744 * 214.97786 * 13 11 10 24 24 H 1.08992 * 117.49934 * 359.97438 * 13 11 10 25 25 H 1.09002 * 110.51042 * 237.42604 * 14 9 7 26 26 H 1.09000 * 110.50725 * 0.13661 * 14 9 7 27 27 H 1.09007 * 110.37217 * 142.81007 * 15 14 9 28 28 H 1.08994 * 110.37733 * 265.03723 * 15 14 9 29 29 H 1.09007 * 110.37085 * 281.68064 * 17 16 15 30 30 H 1.09000 * 110.37631 * 159.34395 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0804 -1.1965 -0.0941 9 6 1.2569 -2.4957 0.1331 10 7 0.5062 -2.5304 1.3953 11 6 1.4052 -2.3778 2.5469 12 6 1.2031 -3.3249 3.7314 13 6 0.8005 -1.8528 3.8507 14 6 0.3063 -2.6988 -1.0679 15 6 0.8170 -3.9947 -1.7359 16 8 1.5055 -4.7055 -0.6839 17 6 2.2294 -3.6931 0.0487 18 1 -0.4850 0.8368 -0.0734 19 1 -0.2170 -1.8268 1.4054 20 1 2.4264 -2.0793 2.3098 21 1 0.4027 -4.0609 3.6564 22 1 2.0912 -3.6492 4.2738 23 1 1.4240 -1.2093 4.4714 24 1 -0.2643 -1.6203 3.8537 25 1 -0.7207 -2.8249 -0.7251 26 1 0.3789 -1.8588 -1.7587 27 1 -0.0204 -4.5853 -2.1078 28 1 1.5037 -3.7577 -2.5484 29 1 3.1343 -3.4097 -0.4889 30 1 2.4772 -4.0517 1.0477 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261110297.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:35 Heat of formation + Delta-G solvation = -37.904015 kcal Electronic energy + Delta-G solvation = -13257.128888 eV Core-core repulsion = 11052.302756 eV Total energy + Delta-G solvation = -2204.826132 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.31500 -37.99046 -35.52476 -32.96750 -30.73105 -28.85798 -26.66867 -23.65334 -23.05894 -21.56019 -20.94262 -18.51247 -17.21987 -16.93745 -16.35803 -15.89781 -15.81118 -15.24865 -14.55666 -13.89804 -13.47533 -13.35701 -12.92779 -12.63168 -12.54194 -12.26898 -12.20889 -11.98680 -11.70196 -11.25649 -11.01671 -10.84789 -10.53839 -10.39691 -8.83041 -8.05237 -6.29191 1.38439 1.41522 1.46759 2.38394 3.08839 3.18971 3.36372 3.67951 4.25819 4.28273 4.34790 4.44879 4.47247 4.59379 4.73734 4.84933 4.92820 5.00952 5.05412 5.23067 5.24971 5.40351 5.48656 5.66609 5.69633 5.92287 6.22199 6.71070 6.90915 7.04379 7.42773 8.87689 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.025860 B = 0.018434 C = 0.012630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.481501 B = 1518.551383 C = 2216.486816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.038 3.962 3 Si 0.943 3.057 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.552 4.552 8 H 0.048 0.952 9 C 0.202 3.798 10 N -0.650 5.650 11 C 0.026 3.974 12 C -0.166 4.166 13 C -0.195 4.195 14 C -0.109 4.109 15 C 0.046 3.954 16 O -0.398 6.398 17 C 0.064 3.936 18 H 0.264 0.736 19 H 0.343 0.657 20 H 0.081 0.919 21 H 0.088 0.912 22 H 0.105 0.895 23 H 0.096 0.904 24 H 0.082 0.918 25 H 0.045 0.955 26 H 0.054 0.946 27 H 0.097 0.903 28 H 0.057 0.943 29 H 0.048 0.952 30 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.709 -2.843 2.087 3.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.163 4.163 3 Si 0.770 3.230 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.202 1.202 7 C -0.591 4.591 8 H 0.066 0.934 9 C 0.112 3.888 10 N -0.281 5.281 11 C -0.086 4.086 12 C -0.205 4.205 13 C -0.233 4.233 14 C -0.148 4.148 15 C -0.030 4.030 16 O -0.317 6.317 17 C -0.013 4.013 18 H 0.074 0.926 19 H 0.164 0.836 20 H 0.099 0.901 21 H 0.106 0.894 22 H 0.123 0.877 23 H 0.115 0.885 24 H 0.101 0.899 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.115 0.885 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.515 -3.638 2.204 4.515 hybrid contribution 0.515 2.353 -0.226 2.419 sum 2.030 -1.285 1.978 3.112 Atomic orbital electron populations 1.69871 1.06548 1.27777 1.49718 1.25468 0.95510 1.01350 0.94007 0.85841 0.78603 0.80034 0.78506 1.20097 1.21147 1.20195 1.21746 0.93455 0.92031 1.51895 0.93369 1.19788 0.90160 0.91522 0.87306 1.60820 1.13508 1.52567 1.01215 1.22158 0.96915 1.02859 0.86629 1.23144 1.03194 0.92291 1.01836 1.23113 1.00870 0.97676 1.01683 1.22604 0.98612 0.95765 0.97822 1.23490 0.96161 0.93130 0.90233 1.88939 1.65547 1.31884 1.45373 1.23468 0.94100 0.88194 0.95569 0.92611 0.83634 0.90107 0.89357 0.87705 0.88549 0.89945 0.93610 0.92706 0.88460 0.92492 0.93379 0.90130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -47.20 10.75 21.45 0.23 -46.97 16 2 C 0.04 1.96 5.09 84.65 0.43 2.39 16 3 Si 0.94 41.48 29.54 68.60 2.03 43.51 16 4 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 5 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 6 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 7 C -0.55 -28.19 6.61 25.60 0.17 -28.02 16 8 H 0.05 2.48 7.60 -2.91 -0.02 2.46 16 9 C 0.20 9.62 0.53 3.80 0.00 9.62 16 10 N -0.65 -30.23 6.25 -446.95 -2.79 -33.02 16 11 C 0.03 1.07 4.49 44.92 0.20 1.28 16 12 C -0.17 -5.62 10.46 30.62 0.32 -5.30 16 13 C -0.20 -6.98 10.35 30.62 0.32 -6.67 16 14 C -0.11 -5.03 5.56 31.61 0.18 -4.86 16 15 C 0.05 1.83 7.63 72.48 0.55 2.38 16 16 O -0.40 -17.22 11.65 -148.98 -1.74 -18.96 16 17 C 0.06 2.79 6.63 72.48 0.48 3.27 16 18 H 0.26 13.45 8.32 -92.71 -0.77 12.68 16 19 H 0.34 17.30 7.06 -89.69 -0.63 16.67 16 20 H 0.08 3.60 7.06 -2.39 -0.02 3.58 16 21 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 22 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 23 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 24 H 0.08 3.01 8.14 -2.39 -0.02 2.99 16 25 H 0.05 2.17 7.97 -2.39 -0.02 2.15 16 26 H 0.05 2.71 7.25 -2.39 -0.02 2.69 16 27 H 0.10 3.30 8.14 -2.38 -0.02 3.28 16 28 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.05 2.07 7.72 -2.38 -0.02 2.05 16 30 H 0.08 3.43 6.99 -2.39 -0.02 3.41 16 Total: -1.00 -53.51 245.67 0.87 -52.64 By element: Atomic # 1 Polarization: 28.21 SS G_CDS: 0.49 Total: 28.70 kcal Atomic # 6 Polarization: -28.56 SS G_CDS: 2.65 Total: -25.91 kcal Atomic # 7 Polarization: -77.42 SS G_CDS: -2.56 Total: -79.98 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: -1.74 Total: -18.96 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.51 kcal Total: -53.51 0.87 -52.64 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261110297.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.738 kcal (2) G-P(sol) polarization free energy of solvation -53.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds