Wall clock time and date at job start Mon Mar 30 2020 02:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00049 * 2 1 4 4 H 1.48501 * 109.47119 * 273.58769 * 3 2 1 5 5 H 1.48499 * 109.47433 * 33.58474 * 3 2 1 6 6 H 1.48504 * 109.47219 * 153.58554 * 3 2 1 7 7 C 1.37878 * 119.99914 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00150 * 355.05113 * 7 2 1 9 9 C 1.50699 * 119.99881 * 175.04658 * 7 2 1 10 10 N 1.46899 * 110.53872 * 66.93658 * 9 7 2 11 11 C 1.46898 * 111.00011 * 58.07297 * 10 9 7 12 12 C 1.52998 * 117.49477 * 224.99049 * 11 10 9 13 13 C 1.53006 * 117.49924 * 156.33287 * 11 10 9 14 14 C 1.54809 * 110.48971 * 304.31913 * 9 7 2 15 15 C 1.54998 * 102.12377 * 262.22382 * 14 9 7 16 16 O 1.44378 * 103.49219 * 322.95755 * 15 14 9 17 17 C 1.43750 * 106.97127 * 40.05984 * 16 15 14 18 18 H 0.97002 * 119.99927 * 0.02562 * 1 2 3 19 19 H 1.00903 * 110.99435 * 182.01941 * 10 9 7 20 20 H 1.09000 * 115.55114 * 10.66386 * 11 10 9 21 21 H 1.08998 * 117.50331 * 0.02562 * 12 11 10 22 22 H 1.09005 * 117.49652 * 145.02068 * 12 11 10 23 23 H 1.08995 * 117.49833 * 214.97615 * 13 11 10 24 24 H 1.09001 * 117.49745 * 359.97438 * 13 11 10 25 25 H 1.09001 * 110.90834 * 144.00330 * 14 9 7 26 26 H 1.08998 * 110.90779 * 20.43674 * 14 9 7 27 27 H 1.09002 * 110.61823 * 81.45831 * 15 14 9 28 28 H 1.09003 * 110.61517 * 204.29741 * 15 14 9 29 29 H 1.08996 * 109.87361 * 92.91877 * 17 16 15 30 30 H 1.09002 * 109.87485 * 213.91322 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4208 2.0902 -1.3973 5 1 1.4866 2.6296 0.7745 6 1 3.5826 1.4194 0.6229 7 6 2.0045 -1.1941 0.0005 8 1 1.4675 -2.1276 0.0816 9 6 3.5073 -1.1965 -0.1122 10 7 4.1150 -0.6038 1.0867 11 6 3.7087 -1.3305 2.2970 12 6 3.2840 -0.5005 3.5101 13 6 4.6257 -1.2373 3.5183 14 6 3.9568 -0.4329 -1.3815 15 6 4.1860 -1.5862 -2.3913 16 8 4.7445 -2.6402 -1.5777 17 6 4.0301 -2.6306 -0.3303 18 1 -0.4850 0.8401 -0.0004 19 1 5.1202 -0.5720 1.0044 20 1 3.1913 -2.2747 2.1270 21 1 3.3056 0.5847 3.4100 22 1 2.4873 -0.8989 4.1384 23 1 4.7112 -2.1200 4.1519 24 1 5.5306 -0.6371 3.4235 25 1 4.8817 0.1142 -1.1993 26 1 3.1720 0.2387 -1.7298 27 1 3.2414 -1.9025 -2.8337 28 1 4.8894 -1.2832 -3.1669 29 1 3.1930 -3.3271 -0.3774 30 1 4.7000 -2.9110 0.4826 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261110298.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:37 Heat of formation + Delta-G solvation = -3.750510 kcal Electronic energy + Delta-G solvation = -13336.595566 eV Core-core repulsion = 11133.250442 eV Total energy + Delta-G solvation = -2203.345125 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.02598 -36.64901 -33.63983 -31.69951 -29.49935 -27.20474 -24.74798 -22.33594 -21.76242 -20.28247 -19.35200 -16.53576 -15.82137 -15.55520 -14.90896 -14.44334 -13.97660 -13.69887 -12.95190 -12.50745 -12.21868 -11.95085 -11.29165 -11.14845 -10.97117 -10.82956 -10.30954 -9.97347 -9.81462 -9.58554 -9.53639 -9.12127 -8.95411 -8.56630 -7.10339 -6.08567 -4.16730 3.39058 3.53613 3.81914 4.51275 4.58855 4.66901 4.85920 5.26393 5.57958 5.68040 5.69986 5.79166 5.88776 6.06071 6.07188 6.09994 6.20822 6.42537 6.48989 6.51848 6.63436 6.67761 6.79734 6.87135 7.44439 7.60494 7.98430 8.28766 8.56293 8.89529 9.56455 11.01154 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.024021 B = 0.022716 C = 0.014676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.386264 B = 1232.334340 C = 1907.429893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.089 3.911 3 Si 0.868 3.132 4 H -0.296 1.296 5 H -0.307 1.307 6 H -0.201 1.201 7 C -0.508 4.508 8 H 0.072 0.928 9 C 0.189 3.811 10 N -0.644 5.644 11 C 0.061 3.939 12 C -0.171 4.171 13 C -0.214 4.214 14 C -0.153 4.153 15 C 0.056 3.944 16 O -0.395 6.395 17 C 0.031 3.969 18 H 0.264 0.736 19 H 0.314 0.686 20 H 0.099 0.901 21 H 0.089 0.911 22 H 0.085 0.915 23 H 0.084 0.916 24 H 0.086 0.914 25 H 0.058 0.942 26 H 0.081 0.919 27 H 0.061 0.939 28 H 0.077 0.923 29 H 0.057 0.943 30 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.384 -0.863 1.573 8.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.115 4.115 3 Si 0.697 3.303 4 H -0.224 1.224 5 H -0.235 1.235 6 H -0.123 1.123 7 C -0.546 4.546 8 H 0.090 0.910 9 C 0.099 3.901 10 N -0.274 5.274 11 C -0.049 4.049 12 C -0.209 4.209 13 C -0.252 4.252 14 C -0.191 4.191 15 C -0.021 4.021 16 O -0.314 6.314 17 C -0.047 4.047 18 H 0.073 0.927 19 H 0.133 0.867 20 H 0.116 0.884 21 H 0.108 0.892 22 H 0.103 0.897 23 H 0.102 0.898 24 H 0.105 0.895 25 H 0.076 0.924 26 H 0.099 0.901 27 H 0.080 0.920 28 H 0.095 0.905 29 H 0.075 0.925 30 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.929 -0.431 1.581 8.096 hybrid contribution 0.432 0.322 0.025 0.539 sum 8.361 -0.110 1.606 8.515 Atomic orbital electron populations 1.69938 1.06860 1.27363 1.48917 1.24952 0.94426 0.99773 0.92386 0.87242 0.84477 0.81616 0.77010 1.22414 1.23472 1.12298 1.20597 0.86617 0.94597 1.52800 0.90967 1.20316 0.96051 0.87387 0.86304 1.61166 1.11103 1.53377 1.01781 1.21966 1.00242 0.97403 0.85335 1.22948 0.96071 0.99317 1.02601 1.23269 0.94914 1.03006 1.04055 1.23406 1.00624 0.98161 0.96954 1.23383 0.97957 0.86990 0.93727 1.88693 1.59692 1.55102 1.27933 1.24067 0.95015 1.00365 0.85295 0.92706 0.86683 0.88356 0.89237 0.89668 0.89760 0.89547 0.92369 0.90083 0.92040 0.90476 0.92455 0.91924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.86 13.96 55.43 0.77 -26.09 16 2 C 0.09 2.49 5.31 -17.82 -0.09 2.40 16 3 Si 0.87 21.38 24.08 -169.99 -4.09 17.29 16 4 H -0.30 -7.25 6.87 56.52 0.39 -6.86 16 5 H -0.31 -7.88 7.11 56.52 0.40 -7.48 16 6 H -0.20 -4.63 5.31 56.52 0.30 -4.33 16 7 C -0.51 -13.53 7.69 -34.44 -0.26 -13.79 16 8 H 0.07 2.12 7.65 -52.49 -0.40 1.72 16 9 C 0.19 4.17 0.32 -131.18 -0.04 4.13 16 10 N -0.64 -13.16 3.47 -92.62 -0.32 -13.48 16 11 C 0.06 1.18 4.69 -67.71 -0.32 0.86 16 12 C -0.17 -3.11 10.46 -26.69 -0.28 -3.39 16 13 C -0.21 -3.36 10.35 -26.69 -0.28 -3.64 16 14 C -0.15 -3.19 4.76 -24.72 -0.12 -3.31 16 15 C 0.06 1.07 7.72 38.21 0.29 1.36 16 16 O -0.40 -8.07 11.52 -35.23 -0.41 -8.47 16 17 C 0.03 0.64 6.36 37.78 0.24 0.88 16 18 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 19 H 0.31 5.81 8.59 -39.29 -0.34 5.48 16 20 H 0.10 2.01 7.10 -51.93 -0.37 1.64 16 21 H 0.09 1.70 8.14 -51.93 -0.42 1.28 16 22 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 23 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 24 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 25 H 0.06 1.11 7.96 -51.93 -0.41 0.70 16 26 H 0.08 1.84 4.71 -51.93 -0.24 1.60 16 27 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 28 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.06 1.24 7.43 -51.93 -0.39 0.85 16 30 H 0.06 1.19 7.33 -51.93 -0.38 0.81 16 LS Contribution 237.92 15.07 3.59 3.59 Total: -1.00 -29.19 237.92 -5.64 -34.83 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -4.32 Total: 6.83 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: -0.86 Total: -14.50 kcal Atomic # 7 Polarization: -40.02 SS G_CDS: 0.45 Total: -39.57 kcal Atomic # 8 Polarization: -8.07 SS G_CDS: -0.41 Total: -8.47 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.09 Total: 17.29 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -29.19 -5.64 -34.83 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261110298.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.077 kcal (2) G-P(sol) polarization free energy of solvation -29.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds