Wall clock time and date at job start Mon Mar 30 2020 02:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00049 * 2 1 4 4 H 1.48501 * 109.47119 * 273.58769 * 3 2 1 5 5 H 1.48499 * 109.47433 * 33.58474 * 3 2 1 6 6 H 1.48504 * 109.47219 * 153.58554 * 3 2 1 7 7 C 1.37878 * 119.99914 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00150 * 355.05113 * 7 2 1 9 9 C 1.50699 * 119.99881 * 175.04658 * 7 2 1 10 10 N 1.46899 * 110.53872 * 66.93658 * 9 7 2 11 11 C 1.46898 * 111.00011 * 58.07297 * 10 9 7 12 12 C 1.52998 * 117.49477 * 224.99049 * 11 10 9 13 13 C 1.53006 * 117.49924 * 156.33287 * 11 10 9 14 14 C 1.54809 * 110.48971 * 304.31913 * 9 7 2 15 15 C 1.54998 * 102.12377 * 262.22382 * 14 9 7 16 16 O 1.44378 * 103.49219 * 322.95755 * 15 14 9 17 17 C 1.43750 * 106.97127 * 40.05984 * 16 15 14 18 18 H 0.97002 * 119.99927 * 0.02562 * 1 2 3 19 19 H 1.00903 * 110.99435 * 182.01941 * 10 9 7 20 20 H 1.09000 * 115.55114 * 10.66386 * 11 10 9 21 21 H 1.08998 * 117.50331 * 0.02562 * 12 11 10 22 22 H 1.09005 * 117.49652 * 145.02068 * 12 11 10 23 23 H 1.08995 * 117.49833 * 214.97615 * 13 11 10 24 24 H 1.09001 * 117.49745 * 359.97438 * 13 11 10 25 25 H 1.09001 * 110.90834 * 144.00330 * 14 9 7 26 26 H 1.08998 * 110.90779 * 20.43674 * 14 9 7 27 27 H 1.09002 * 110.61823 * 81.45831 * 15 14 9 28 28 H 1.09003 * 110.61517 * 204.29741 * 15 14 9 29 29 H 1.08996 * 109.87361 * 92.91877 * 17 16 15 30 30 H 1.09002 * 109.87485 * 213.91322 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4208 2.0902 -1.3973 5 1 1.4866 2.6296 0.7745 6 1 3.5826 1.4194 0.6229 7 6 2.0045 -1.1941 0.0005 8 1 1.4675 -2.1276 0.0816 9 6 3.5073 -1.1965 -0.1122 10 7 4.1150 -0.6038 1.0867 11 6 3.7087 -1.3305 2.2970 12 6 3.2840 -0.5005 3.5101 13 6 4.6257 -1.2373 3.5183 14 6 3.9568 -0.4329 -1.3815 15 6 4.1860 -1.5862 -2.3913 16 8 4.7445 -2.6402 -1.5777 17 6 4.0301 -2.6306 -0.3303 18 1 -0.4850 0.8401 -0.0004 19 1 5.1202 -0.5720 1.0044 20 1 3.1913 -2.2747 2.1270 21 1 3.3056 0.5847 3.4100 22 1 2.4873 -0.8989 4.1384 23 1 4.7112 -2.1200 4.1519 24 1 5.5306 -0.6371 3.4235 25 1 4.8817 0.1142 -1.1993 26 1 3.1720 0.2387 -1.7298 27 1 3.2414 -1.9025 -2.8337 28 1 4.8894 -1.2832 -3.1669 29 1 3.1930 -3.3271 -0.3774 30 1 4.7000 -2.9110 0.4826 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261110298.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:37 Heat of formation + Delta-G solvation = -25.039860 kcal Electronic energy + Delta-G solvation = -13337.518742 eV Core-core repulsion = 11133.250442 eV Total energy + Delta-G solvation = -2204.268300 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.67908 -38.12783 -35.42464 -33.67905 -31.09882 -28.93896 -26.73016 -23.92923 -23.09935 -21.85379 -21.13150 -18.47808 -17.44574 -17.35179 -16.43464 -16.10496 -15.66478 -15.37465 -14.62029 -14.53348 -13.79155 -13.63678 -13.00981 -12.87301 -12.47544 -12.27244 -12.13418 -11.84369 -11.58430 -11.23616 -11.02060 -10.99818 -10.70419 -10.56400 -8.72736 -8.25662 -6.35831 1.42095 1.53205 1.85583 2.53353 3.02364 3.06980 3.18618 3.44835 4.02274 4.17141 4.22253 4.30880 4.33731 4.43051 4.53910 4.66200 4.82143 4.85766 4.90573 5.04332 5.07575 5.15370 5.23085 5.38705 5.60659 5.91043 6.08021 6.50568 6.63388 6.96525 7.40437 8.87954 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.024021 B = 0.022716 C = 0.014676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.386264 B = 1232.334340 C = 1907.429893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.036 3.964 3 Si 0.924 3.076 4 H -0.291 1.291 5 H -0.324 1.324 6 H -0.169 1.169 7 C -0.498 4.498 8 H 0.027 0.973 9 C 0.189 3.811 10 N -0.647 5.647 11 C 0.031 3.969 12 C -0.187 4.187 13 C -0.168 4.168 14 C -0.155 4.155 15 C 0.056 3.944 16 O -0.396 6.396 17 C 0.038 3.962 18 H 0.261 0.739 19 H 0.333 0.667 20 H 0.077 0.923 21 H 0.081 0.919 22 H 0.085 0.915 23 H 0.107 0.893 24 H 0.106 0.894 25 H 0.086 0.914 26 H 0.061 0.939 27 H 0.047 0.953 28 H 0.118 0.882 29 H 0.035 0.965 30 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.485 -0.322 1.909 11.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.163 4.163 3 Si 0.751 3.249 4 H -0.219 1.219 5 H -0.254 1.254 6 H -0.090 1.090 7 C -0.536 4.536 8 H 0.045 0.955 9 C 0.098 3.902 10 N -0.278 5.278 11 C -0.080 4.080 12 C -0.225 4.225 13 C -0.206 4.206 14 C -0.193 4.193 15 C -0.020 4.020 16 O -0.315 6.315 17 C -0.040 4.040 18 H 0.070 0.930 19 H 0.153 0.847 20 H 0.095 0.905 21 H 0.100 0.900 22 H 0.103 0.897 23 H 0.125 0.875 24 H 0.124 0.876 25 H 0.104 0.896 26 H 0.079 0.921 27 H 0.066 0.934 28 H 0.136 0.864 29 H 0.053 0.947 30 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 11.064 0.088 1.917 11.229 hybrid contribution -0.568 0.033 -0.060 0.572 sum 10.497 0.121 1.856 10.660 Atomic orbital electron populations 1.70083 1.08779 1.27909 1.51951 1.25730 0.94873 1.03227 0.92439 0.86423 0.84371 0.77046 0.77060 1.21908 1.25415 1.08955 1.20747 0.89409 0.92501 1.50960 0.95476 1.20129 0.93189 0.88998 0.87838 1.60860 1.12257 1.53420 1.01267 1.21948 1.03118 0.96942 0.85958 1.22995 0.98401 0.98905 1.02206 1.23317 0.93957 1.02951 1.00396 1.23382 1.01106 0.98482 0.96332 1.23512 0.98672 0.85862 0.93975 1.88698 1.59357 1.55640 1.27769 1.23916 0.94887 0.98937 0.86296 0.93013 0.84708 0.90471 0.90044 0.89652 0.87463 0.87585 0.89589 0.92052 0.93422 0.86424 0.94672 0.89768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.19 13.96 21.45 0.30 -58.89 16 2 C 0.04 2.06 5.31 84.66 0.45 2.51 16 3 Si 0.92 44.06 24.08 68.60 1.65 45.71 16 4 H -0.29 -13.57 6.87 99.48 0.68 -12.88 16 5 H -0.32 -16.36 7.11 99.48 0.71 -15.66 16 6 H -0.17 -7.13 5.31 99.48 0.53 -6.60 16 7 C -0.50 -27.12 7.69 25.60 0.20 -26.92 16 8 H 0.03 1.68 7.65 -2.91 -0.02 1.66 16 9 C 0.19 8.07 0.32 3.80 0.00 8.07 16 10 N -0.65 -24.63 3.47 -446.94 -1.55 -26.18 16 11 C 0.03 1.12 4.69 44.92 0.21 1.34 16 12 C -0.19 -6.43 10.46 30.62 0.32 -6.11 16 13 C -0.17 -4.60 10.35 30.62 0.32 -4.28 16 14 C -0.15 -6.03 4.76 31.90 0.15 -5.88 16 15 C 0.06 1.99 7.72 72.67 0.56 2.55 16 16 O -0.40 -15.11 11.52 -148.98 -1.72 -16.82 16 17 C 0.04 1.53 6.36 72.39 0.46 1.99 16 18 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 19 H 0.33 10.80 8.59 -89.69 -0.77 10.03 16 20 H 0.08 3.15 7.10 -2.39 -0.02 3.13 16 21 H 0.08 2.93 8.14 -2.39 -0.02 2.92 16 22 H 0.08 2.88 8.14 -2.38 -0.02 2.86 16 23 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 24 H 0.11 2.55 8.14 -2.39 -0.02 2.54 16 25 H 0.09 2.89 7.96 -2.39 -0.02 2.87 16 26 H 0.06 2.66 4.71 -2.39 -0.01 2.65 16 27 H 0.05 1.80 8.14 -2.39 -0.02 1.79 16 28 H 0.12 3.24 8.14 -2.39 -0.02 3.22 16 29 H 0.03 1.54 7.43 -2.39 -0.02 1.52 16 30 H 0.08 2.99 7.33 -2.39 -0.02 2.97 16 Total: -1.00 -64.15 237.92 1.51 -62.65 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: 0.16 Total: 20.27 kcal Atomic # 6 Polarization: -29.40 SS G_CDS: 2.67 Total: -26.73 kcal Atomic # 7 Polarization: -83.81 SS G_CDS: -1.25 Total: -85.07 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: -1.72 Total: -16.82 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 1.65 Total: 45.71 kcal Total: -64.15 1.51 -62.65 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261110298.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.607 kcal (2) G-P(sol) polarization free energy of solvation -64.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds