Wall clock time and date at job start Mon Mar 30 2020 01:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 N 1.46506 * 109.47289 * 120.00172 * 2 1 3 5 5 C 1.37152 * 125.79849 * 299.69457 * 4 2 1 6 6 N 1.29733 * 108.80429 * 179.87685 * 5 4 2 7 7 N 1.40188 * 108.07281 * 0.37496 * 6 5 4 8 8 C 1.37069 * 126.36169 * 179.74327 * 7 6 5 9 9 H 1.07999 * 119.99877 * 180.02562 * 8 7 6 10 10 C 1.38831 * 120.00097 * 0.02562 * 8 7 6 11 11 N 1.31431 * 120.00220 * 0.02562 * 10 8 7 12 12 Si 1.86805 * 119.99898 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.46811 * 90.00382 * 12 10 8 14 14 H 1.48497 * 109.47088 * 210.00008 * 12 10 8 15 15 H 1.48493 * 109.47045 * 330.00507 * 12 10 8 16 16 C 1.34798 * 125.80421 * 119.99774 * 4 2 1 17 17 O 1.21730 * 126.27567 * 359.96590 * 16 4 2 18 18 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 19 19 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 20 20 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 22 22 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 23 23 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 24 24 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 25 25 H 1.07994 * 125.60095 * 0.02809 * 5 4 2 26 26 H 0.97004 * 120.00301 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 1.7663 -0.3239 2.4935 6 7 2.3548 -1.1642 3.2875 7 7 3.0239 -2.1114 2.4998 8 6 3.7706 -3.1663 2.9563 9 1 4.2443 -3.8364 2.2542 10 6 3.9179 -3.3734 4.3211 11 7 3.3411 -2.5583 5.1756 12 14 4.9362 -4.8107 4.9431 13 1 6.3485 -4.3823 5.1074 14 1 4.4018 -5.2664 6.2515 15 1 4.8678 -5.9258 3.9649 16 6 2.7966 -1.7912 1.2088 17 8 3.2172 -2.3872 0.2343 18 1 -0.3633 0.5139 -0.8900 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 -1.0277 -0.0005 21 1 1.8934 -0.5138 -0.8899 22 1 1.6768 1.9562 0.8900 23 1 3.1300 1.4424 0.0005 24 1 1.6767 1.9563 -0.8900 25 1 1.1731 0.5237 2.8032 26 1 3.4437 -2.7032 6.1293 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261147742.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:36 Heat of formation + Delta-G solvation = 22.738887 kcal Electronic energy + Delta-G solvation = -12649.502242 eV Core-core repulsion = 10343.765441 eV Total energy + Delta-G solvation = -2305.736801 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.090 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.91495 -37.72225 -37.43838 -35.07101 -32.44785 -30.89608 -28.08268 -27.33715 -24.07335 -23.12979 -21.19984 -19.53182 -17.75236 -17.19067 -17.14490 -16.10908 -15.89665 -15.29479 -15.04115 -14.29844 -13.58520 -13.35977 -13.28673 -13.11293 -12.80856 -12.76284 -12.39191 -12.16783 -12.03375 -11.77931 -11.62281 -10.76977 -10.43814 -9.37995 -8.35874 -6.14847 1.33953 1.38586 1.49324 1.64515 1.70151 2.01923 2.31627 2.95463 3.14516 3.75036 4.12879 4.19304 4.28189 4.50889 4.78357 4.86593 4.90137 4.91448 5.15223 5.25952 5.34439 5.44960 5.91999 6.18258 6.60937 7.01362 7.49051 7.83822 8.66834 Molecular weight = 197.09amu Principal moments of inertia in cm(-1) A = 0.069514 B = 0.010507 C = 0.009716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 402.699067 B = 2664.304595 C = 2881.248606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.139 3.861 3 C -0.150 4.150 4 N -0.536 5.536 5 C 0.174 3.826 6 N -0.263 5.263 7 N -0.279 5.279 8 C -0.357 4.357 9 H 0.099 0.901 10 C 0.004 3.996 11 N -0.842 5.842 12 Si 1.008 2.992 13 H -0.265 1.265 14 H -0.264 1.264 15 H -0.265 1.265 16 C 0.544 3.456 17 O -0.655 6.655 18 H 0.105 0.895 19 H 0.082 0.918 20 H 0.037 0.963 21 H 0.074 0.926 22 H 0.082 0.918 23 H 0.037 0.963 24 H 0.105 0.895 25 H 0.263 0.737 26 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.799 8.239 -3.892 10.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.037 3.963 3 C -0.208 4.208 4 N -0.264 5.264 5 C -0.120 4.120 6 N -0.088 5.088 7 N -0.085 5.085 8 C -0.485 4.485 9 H 0.116 0.884 10 C -0.203 4.203 11 N -0.474 5.474 12 Si 0.828 3.172 13 H -0.190 1.190 14 H -0.188 1.188 15 H -0.190 1.190 16 C 0.245 3.755 17 O -0.541 6.541 18 H 0.123 0.877 19 H 0.101 0.899 20 H 0.056 0.944 21 H 0.092 0.908 22 H 0.101 0.899 23 H 0.056 0.944 24 H 0.124 0.876 25 H 0.278 0.722 26 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.372 7.617 -3.322 9.895 hybrid contribution 0.443 -0.612 -0.492 0.902 sum -4.929 7.005 -3.813 9.376 Atomic orbital electron populations 1.22127 0.91368 1.02151 1.05136 1.21448 0.96507 0.93965 0.84395 1.22127 1.00620 0.92902 1.05148 1.46080 1.46005 1.25651 1.08614 1.26661 1.03334 1.02496 0.79523 1.77753 1.11276 1.00435 1.19314 1.44758 1.39058 1.22122 1.02531 1.19673 1.30678 1.04983 0.93117 0.88357 1.26389 0.97927 1.01242 0.94792 1.70278 1.38602 1.35745 1.02739 0.84769 0.77829 0.76621 0.77991 1.18955 1.18808 1.18971 1.17046 0.87732 0.85792 0.84883 1.90744 1.64240 1.61425 1.37730 0.87651 0.89938 0.94395 0.90764 0.89929 0.94381 0.87646 0.72152 0.91583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.27 9.25 71.98 0.67 -2.61 15 2 C 0.14 4.15 3.55 44.99 0.16 4.31 15 3 C -0.15 -3.27 9.24 71.98 0.66 -2.61 15 4 N -0.54 -22.52 2.60 -637.53 -1.65 -24.17 15 5 C 0.17 6.90 11.61 179.80 2.09 8.99 15 6 N -0.26 -13.93 10.39 -59.38 -0.62 -14.55 15 7 N -0.28 -16.72 3.70 -320.46 -1.18 -17.90 15 8 C -0.36 -21.96 10.12 84.02 0.85 -21.11 15 9 H 0.10 6.13 7.82 -2.91 -0.02 6.11 15 10 C 0.00 0.25 5.50 84.89 0.47 0.71 15 11 N -0.84 -48.21 11.83 21.64 0.26 -47.95 15 12 Si 1.01 43.09 29.55 68.60 2.03 45.12 15 13 H -0.26 -10.85 7.11 99.48 0.71 -10.14 15 14 H -0.26 -10.52 7.11 99.48 0.71 -9.81 15 15 H -0.27 -11.19 7.11 99.48 0.71 -10.48 15 16 C 0.54 30.70 8.54 179.00 1.53 32.23 15 17 O -0.66 -40.89 17.44 -4.44 -0.08 -40.97 15 18 H 0.10 1.56 8.14 -2.39 -0.02 1.54 15 19 H 0.08 1.48 7.93 -2.39 -0.02 1.46 15 20 H 0.04 1.00 8.14 -2.38 -0.02 0.98 15 21 H 0.07 2.56 7.73 -2.39 -0.02 2.54 15 22 H 0.08 1.48 7.92 -2.39 -0.02 1.46 15 23 H 0.04 1.00 8.14 -2.39 -0.02 0.98 15 24 H 0.10 1.56 8.14 -2.39 -0.02 1.54 15 25 H 0.26 6.63 8.06 -2.91 -0.02 6.61 15 26 H 0.27 14.37 8.31 -92.71 -0.77 13.60 15 Total: -1.00 -80.46 234.95 6.34 -74.12 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: 1.17 Total: 6.39 kcal Atomic # 6 Polarization: 13.49 SS G_CDS: 6.42 Total: 19.92 kcal Atomic # 7 Polarization: -101.37 SS G_CDS: -3.20 Total: -104.57 kcal Atomic # 8 Polarization: -40.89 SS G_CDS: -0.08 Total: -40.97 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -80.46 6.34 -74.12 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261147742.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.856 kcal (2) G-P(sol) polarization free energy of solvation -80.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds