Wall clock time and date at job start Mon Mar 30 2020 01:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47235 * 2 1 4 4 N 1.46502 * 109.47337 * 119.99801 * 2 1 3 5 5 C 1.37124 * 119.99819 * 154.99626 * 4 2 1 6 6 N 1.32204 * 126.16007 * 0.03232 * 5 4 2 7 7 N 1.28679 * 109.46645 * 179.73606 * 6 5 4 8 8 C 1.32921 * 109.14949 * 359.97438 * 7 6 5 9 9 C 1.39592 * 126.37136 * 180.02562 * 8 7 6 10 10 H 1.07998 * 120.00067 * 179.97438 * 9 8 7 11 11 C 1.40219 * 119.99993 * 359.97438 * 9 8 7 12 12 N 1.30728 * 120.00129 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99873 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47520 * 59.99755 * 13 11 9 15 15 H 1.48500 * 109.47251 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47278 * 299.99605 * 13 11 9 17 17 O 1.34638 * 126.15409 * 179.71713 * 5 4 2 18 18 H 1.09000 * 109.46880 * 300.00137 * 1 2 3 19 19 H 1.09000 * 109.47351 * 59.99565 * 1 2 3 20 20 H 1.08992 * 109.47090 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.47403 * 240.00396 * 2 1 3 22 22 H 1.09000 * 109.47298 * 60.00119 * 3 2 1 23 23 H 1.09004 * 109.47295 * 180.02562 * 3 2 1 24 24 H 1.09004 * 109.47345 * 299.99957 * 3 2 1 25 25 H 0.96998 * 119.99931 * 335.00648 * 4 2 1 26 26 H 0.97004 * 120.00595 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 3.2616 -1.2691 1.1943 6 7 4.1169 -1.2766 0.1862 7 7 5.1853 -1.9032 0.5351 8 6 5.0545 -2.3235 1.7893 9 6 5.9996 -3.0407 2.5248 10 1 5.7846 -3.3311 3.5426 11 6 7.2279 -3.3840 1.9423 12 7 7.4879 -3.0329 0.7102 13 14 8.4923 -4.3444 2.9264 14 1 7.9132 -5.6486 3.3374 15 1 9.6963 -4.5798 2.0895 16 1 8.8725 -3.5689 4.1344 17 8 3.8333 -1.9265 2.2207 18 1 -0.3633 0.5139 0.8900 19 1 -0.3634 0.5139 -0.8899 20 1 -0.3633 -1.0276 0.0005 21 1 1.8933 -0.5138 -0.8900 22 1 1.6767 1.9564 0.8900 23 1 3.1300 1.4425 -0.0005 24 1 1.6767 1.9564 -0.8900 25 1 1.4622 -0.7387 1.9895 26 1 8.3378 -3.2701 0.3072 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261207800.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:47 Heat of formation + Delta-G solvation = 25.783022 kcal Electronic energy + Delta-G solvation = -12261.437929 eV Core-core repulsion = 9955.833132 eV Total energy + Delta-G solvation = -2305.604798 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.090 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.46452 -36.72842 -33.96675 -33.51682 -31.27738 -28.55308 -26.99766 -25.18268 -22.01178 -21.14125 -20.02881 -17.58918 -16.81767 -15.40976 -15.30397 -15.01496 -14.05584 -13.85594 -13.05199 -12.85166 -12.12911 -11.96315 -11.59280 -11.34257 -11.20500 -10.94889 -10.70675 -10.48389 -10.24636 -9.84217 -9.55486 -9.02606 -8.57240 -7.00989 -6.67018 -4.53366 2.96510 3.05893 3.09689 3.32454 3.46114 3.92133 4.43616 5.07689 5.25388 5.27877 5.34622 5.52117 5.77688 5.89745 5.96936 6.11037 6.38167 6.57530 6.70881 6.90086 7.20565 7.27602 8.14821 8.23834 8.29305 8.54756 8.72085 10.26463 10.78019 Molecular weight = 197.09amu Principal moments of inertia in cm(-1) A = 0.099884 B = 0.008070 C = 0.007739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 280.257977 B = 3468.605487 C = 3617.071927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.172 3.828 3 C -0.165 4.165 4 N -0.698 5.698 5 C 0.295 3.705 6 N -0.337 5.337 7 N -0.351 5.351 8 C 0.283 3.717 9 C -0.431 4.431 10 H 0.090 0.910 11 C 0.074 3.926 12 N -0.733 5.733 13 Si 0.931 3.069 14 H -0.264 1.264 15 H -0.275 1.275 16 H -0.264 1.264 17 O -0.288 6.288 18 H 0.056 0.944 19 H 0.069 0.931 20 H 0.059 0.941 21 H 0.084 0.916 22 H 0.049 0.951 23 H 0.064 0.936 24 H 0.058 0.942 25 H 0.397 0.603 26 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.583 3.247 1.240 8.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.068 3.932 3 C -0.224 4.224 4 N -0.347 5.347 5 C -0.007 4.007 6 N -0.194 5.194 7 N -0.201 5.201 8 C 0.093 3.907 9 C -0.469 4.469 10 H 0.108 0.892 11 C -0.151 4.151 12 N -0.358 5.358 13 Si 0.754 3.246 14 H -0.188 1.188 15 H -0.200 1.200 16 H -0.188 1.188 17 O -0.176 6.176 18 H 0.076 0.924 19 H 0.088 0.912 20 H 0.078 0.922 21 H 0.102 0.898 22 H 0.069 0.931 23 H 0.083 0.917 24 H 0.077 0.923 25 H 0.231 0.769 26 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.842 3.496 -0.329 7.691 hybrid contribution -0.222 -0.611 2.028 2.130 sum -7.064 2.886 1.699 7.818 Atomic orbital electron populations 1.22069 0.94918 1.02310 1.02287 1.20617 0.92521 0.92176 0.87920 1.22262 1.02818 0.96450 1.00890 1.42361 1.12605 1.63105 1.16624 1.22721 0.91362 1.01145 0.85492 1.74691 0.99718 1.21560 1.23383 1.75585 1.13767 1.20733 1.10057 1.23350 0.80035 0.96103 0.91242 1.17931 0.96951 1.32120 0.99876 0.89152 1.25819 0.98450 0.95644 0.95215 1.69986 1.22387 1.31831 1.11620 0.86012 0.78771 0.80041 0.79755 1.18827 1.19989 1.18827 1.84685 1.31048 1.61427 1.40424 0.92446 0.91162 0.92152 0.89767 0.93148 0.91706 0.92322 0.76903 0.90732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.77 9.38 37.15 0.35 -1.42 15 2 C 0.17 2.70 3.33 -67.93 -0.23 2.47 15 3 C -0.17 -2.44 9.49 37.16 0.35 -2.08 15 4 N -0.70 -13.20 5.17 -55.69 -0.29 -13.49 15 5 C 0.29 7.46 9.09 -87.01 -0.79 6.67 15 6 N -0.34 -9.58 11.69 29.84 0.35 -9.23 15 7 N -0.35 -10.96 10.49 30.63 0.32 -10.64 15 8 C 0.28 8.51 7.84 -16.58 -0.13 8.38 15 9 C -0.43 -12.13 9.44 -38.33 -0.36 -12.49 15 10 H 0.09 2.33 7.85 -52.49 -0.41 1.92 15 11 C 0.07 1.93 5.50 -17.28 -0.10 1.84 15 12 N -0.73 -20.52 11.92 55.56 0.66 -19.86 15 13 Si 0.93 18.90 29.56 -169.99 -5.03 13.88 15 14 H -0.26 -5.22 7.11 56.52 0.40 -4.82 15 15 H -0.28 -5.39 7.11 56.52 0.40 -4.99 15 16 H -0.26 -5.22 7.11 56.52 0.40 -4.82 15 17 O -0.29 -7.98 10.92 1.47 0.02 -7.97 15 18 H 0.06 0.57 8.14 -51.93 -0.42 0.15 15 19 H 0.07 0.66 8.14 -51.93 -0.42 0.23 15 20 H 0.06 0.68 8.14 -51.93 -0.42 0.25 15 21 H 0.08 1.50 7.79 -51.93 -0.40 1.10 15 22 H 0.05 0.67 8.14 -51.93 -0.42 0.25 15 23 H 0.06 1.17 8.14 -51.93 -0.42 0.75 15 24 H 0.06 0.71 8.14 -51.93 -0.42 0.29 15 25 H 0.40 6.42 8.72 -40.82 -0.36 6.06 15 26 H 0.28 7.05 8.29 -40.82 -0.34 6.71 15 LS Contribution 236.65 15.07 3.57 3.57 Total: -1.00 -33.14 236.65 -4.14 -37.28 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -2.84 Total: 3.09 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: -0.90 Total: 3.36 kcal Atomic # 7 Polarization: -54.26 SS G_CDS: 1.04 Total: -53.22 kcal Atomic # 8 Polarization: -7.98 SS G_CDS: 0.02 Total: -7.97 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.03 Total: 13.88 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -33.14 -4.14 -37.28 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261207800.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.062 kcal (2) G-P(sol) polarization free energy of solvation -33.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds