Wall clock time and date at job start Mon Mar 30 2020 01:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47235 * 2 1 4 4 N 1.46502 * 109.47337 * 119.99801 * 2 1 3 5 5 C 1.37124 * 119.99819 * 154.99626 * 4 2 1 6 6 N 1.32204 * 126.16007 * 0.03232 * 5 4 2 7 7 N 1.28679 * 109.46645 * 179.73606 * 6 5 4 8 8 C 1.32921 * 109.14949 * 359.97438 * 7 6 5 9 9 C 1.39592 * 126.37136 * 180.02562 * 8 7 6 10 10 H 1.07998 * 120.00067 * 179.97438 * 9 8 7 11 11 C 1.40219 * 119.99993 * 359.97438 * 9 8 7 12 12 N 1.30728 * 120.00129 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99873 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47520 * 59.99755 * 13 11 9 15 15 H 1.48500 * 109.47251 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47278 * 299.99605 * 13 11 9 17 17 O 1.34638 * 126.15409 * 179.71713 * 5 4 2 18 18 H 1.09000 * 109.46880 * 300.00137 * 1 2 3 19 19 H 1.09000 * 109.47351 * 59.99565 * 1 2 3 20 20 H 1.08992 * 109.47090 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.47403 * 240.00396 * 2 1 3 22 22 H 1.09000 * 109.47298 * 60.00119 * 3 2 1 23 23 H 1.09004 * 109.47295 * 180.02562 * 3 2 1 24 24 H 1.09004 * 109.47345 * 299.99957 * 3 2 1 25 25 H 0.96998 * 119.99931 * 335.00648 * 4 2 1 26 26 H 0.97004 * 120.00595 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 3.2616 -1.2691 1.1943 6 7 4.1169 -1.2766 0.1862 7 7 5.1853 -1.9032 0.5351 8 6 5.0545 -2.3235 1.7893 9 6 5.9996 -3.0407 2.5248 10 1 5.7846 -3.3311 3.5426 11 6 7.2279 -3.3840 1.9423 12 7 7.4879 -3.0329 0.7102 13 14 8.4923 -4.3444 2.9264 14 1 7.9132 -5.6486 3.3374 15 1 9.6963 -4.5798 2.0895 16 1 8.8725 -3.5689 4.1344 17 8 3.8333 -1.9265 2.2207 18 1 -0.3633 0.5139 0.8900 19 1 -0.3634 0.5139 -0.8899 20 1 -0.3633 -1.0276 0.0005 21 1 1.8933 -0.5138 -0.8900 22 1 1.6767 1.9564 0.8900 23 1 3.1300 1.4425 -0.0005 24 1 1.6767 1.9564 -0.8900 25 1 1.4622 -0.7387 1.9895 26 1 8.3378 -3.2701 0.3072 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261207800.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:47 Heat of formation + Delta-G solvation = -2.142222 kcal Electronic energy + Delta-G solvation = -12262.648859 eV Core-core repulsion = 9955.833132 eV Total energy + Delta-G solvation = -2306.815727 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.090 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.58942 -38.19487 -36.07263 -35.58556 -32.86150 -30.55227 -28.10566 -27.21388 -23.91621 -23.10248 -21.64150 -19.62740 -18.64778 -17.42961 -17.31435 -16.55450 -15.73299 -15.27027 -14.97818 -14.11566 -13.51715 -13.08747 -13.02897 -13.01014 -12.96770 -12.53240 -12.33839 -12.03592 -11.93877 -11.71496 -11.54588 -10.85197 -10.73182 -8.99179 -8.64615 -6.66800 1.15433 1.37888 1.52579 1.63733 1.64819 2.22209 2.36162 3.16444 3.37094 4.00513 4.21010 4.35975 4.51587 4.79158 4.80278 4.93780 4.98385 5.06546 5.16864 5.21772 5.36064 5.40785 6.10008 6.27293 6.41881 6.63019 6.79763 8.32638 8.64309 Molecular weight = 197.09amu Principal moments of inertia in cm(-1) A = 0.099884 B = 0.008070 C = 0.007739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 280.257977 B = 3468.605487 C = 3617.071927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.162 3.838 3 C -0.159 4.159 4 N -0.677 5.677 5 C 0.314 3.686 6 N -0.376 5.376 7 N -0.396 5.396 8 C 0.252 3.748 9 C -0.458 4.458 10 H 0.106 0.894 11 C 0.026 3.974 12 N -0.778 5.778 13 Si 1.022 2.978 14 H -0.252 1.252 15 H -0.264 1.264 16 H -0.252 1.252 17 O -0.298 6.298 18 H 0.077 0.923 19 H 0.096 0.904 20 H 0.060 0.940 21 H 0.057 0.943 22 H 0.068 0.932 23 H 0.021 0.979 24 H 0.089 0.911 25 H 0.413 0.587 26 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.380 3.212 2.330 9.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.059 3.941 3 C -0.218 4.218 4 N -0.329 5.329 5 C 0.010 3.990 6 N -0.232 5.232 7 N -0.246 5.246 8 C 0.062 3.938 9 C -0.495 4.495 10 H 0.124 0.876 11 C -0.195 4.195 12 N -0.404 5.404 13 Si 0.838 3.162 14 H -0.175 1.175 15 H -0.188 1.188 16 H -0.176 1.176 17 O -0.186 6.186 18 H 0.096 0.904 19 H 0.115 0.885 20 H 0.079 0.921 21 H 0.075 0.925 22 H 0.087 0.913 23 H 0.040 0.960 24 H 0.108 0.892 25 H 0.250 0.750 26 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.700 3.500 0.735 8.490 hybrid contribution -0.128 -0.508 1.651 1.732 sum -7.828 2.992 2.386 8.713 Atomic orbital electron populations 1.22003 0.90492 1.03151 1.04607 1.20985 0.95767 0.91893 0.85490 1.22202 0.99999 0.96214 1.03354 1.42831 1.10048 1.61525 1.18519 1.23349 0.92490 0.98906 0.84253 1.74551 1.00281 1.23697 1.24635 1.75475 1.15422 1.22605 1.11083 1.23921 0.81045 0.97219 0.91659 1.18581 0.97752 1.32406 1.00746 0.87567 1.27144 1.00112 0.95993 0.96243 1.70102 1.23624 1.32786 1.13862 0.84695 0.75194 0.78303 0.77960 1.17546 1.18775 1.17558 1.84672 1.30850 1.62010 1.41092 0.90357 0.88543 0.92105 0.92459 0.91320 0.95959 0.89242 0.74991 0.89779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 9.38 71.98 0.68 -2.06 15 2 C 0.16 4.84 3.33 44.99 0.15 4.99 15 3 C -0.16 -4.45 9.49 71.98 0.68 -3.76 15 4 N -0.68 -25.05 5.17 -440.92 -2.28 -27.33 15 5 C 0.31 16.18 9.09 179.09 1.63 17.80 15 6 N -0.38 -22.21 11.69 -172.96 -2.02 -24.23 15 7 N -0.40 -25.79 10.49 -169.66 -1.78 -27.57 15 8 C 0.25 15.68 7.84 84.86 0.66 16.34 15 9 C -0.46 -26.14 9.44 23.08 0.22 -25.92 15 10 H 0.11 5.48 7.85 -2.91 -0.02 5.46 15 11 C 0.03 1.35 5.50 85.34 0.47 1.82 15 12 N -0.78 -44.51 11.92 21.88 0.26 -44.25 15 13 Si 1.02 37.98 29.56 68.60 2.03 40.01 15 14 H -0.25 -8.82 7.11 99.48 0.71 -8.12 15 15 H -0.26 -9.21 7.11 99.48 0.71 -8.51 15 16 H -0.25 -8.83 7.11 99.48 0.71 -8.13 15 17 O -0.30 -16.89 10.92 -17.65 -0.19 -17.08 15 18 H 0.08 1.20 8.14 -2.39 -0.02 1.18 15 19 H 0.10 1.39 8.14 -2.39 -0.02 1.37 15 20 H 0.06 1.17 8.14 -2.39 -0.02 1.15 15 21 H 0.06 2.05 7.79 -2.39 -0.02 2.03 15 22 H 0.07 1.66 8.14 -2.39 -0.02 1.64 15 23 H 0.02 0.79 8.14 -2.38 -0.02 0.77 15 24 H 0.09 1.95 8.14 -2.38 -0.02 1.93 15 25 H 0.41 12.56 8.72 -92.71 -0.81 11.75 15 26 H 0.29 14.80 8.29 -92.71 -0.77 14.03 15 Total: -1.00 -75.56 236.65 0.89 -74.68 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: 0.39 Total: 16.57 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: 4.49 Total: 9.21 kcal Atomic # 7 Polarization: -117.57 SS G_CDS: -5.82 Total: -123.39 kcal Atomic # 8 Polarization: -16.89 SS G_CDS: -0.19 Total: -17.08 kcal Atomic # 14 Polarization: 37.98 SS G_CDS: 2.03 Total: 40.01 kcal Total: -75.56 0.89 -74.68 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261207800.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.535 kcal (2) G-P(sol) polarization free energy of solvation -75.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds