Wall clock time and date at job start Mon Mar 30 2020 02:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.46778 * 2 1 4 4 C 1.38278 * 127.12756 * 90.00205 * 3 2 1 5 5 C 1.39884 * 126.59194 * 359.97438 * 4 3 2 6 6 H 1.07999 * 120.00528 * 5.78242 * 5 4 3 7 7 C 1.40166 * 119.99817 * 185.77948 * 5 4 3 8 8 N 1.30758 * 119.99747 * 184.17442 * 7 5 4 9 9 Si 1.86799 * 119.99931 * 4.18000 * 7 5 4 10 10 H 1.48497 * 109.47236 * 179.97438 * 9 7 5 11 11 H 1.48496 * 109.46961 * 299.99658 * 9 7 5 12 12 H 1.48505 * 109.47308 * 59.99665 * 9 7 5 13 13 N 1.33035 * 106.81013 * 179.73607 * 4 3 2 14 14 N 1.28522 * 109.64424 * 0.26210 * 13 4 3 15 15 C 1.32073 * 110.22061 * 359.97438 * 14 13 4 16 16 O 1.35143 * 126.21214 * 179.97438 * 15 14 13 17 17 C 1.42897 * 116.99997 * 359.97438 * 16 15 14 18 18 H 1.08998 * 109.46855 * 299.99649 * 1 2 3 19 19 H 1.08994 * 109.47079 * 60.00076 * 1 2 3 20 20 H 1.09001 * 109.46619 * 180.02562 * 1 2 3 21 21 H 1.08994 * 109.47525 * 240.00078 * 2 1 3 22 22 H 1.09001 * 109.47012 * 119.99543 * 2 1 3 23 23 H 0.96999 * 120.00718 * 354.85226 * 8 7 5 24 24 H 1.08999 * 109.46983 * 179.97438 * 17 16 15 25 25 H 1.09001 * 109.47076 * 300.00003 * 17 16 15 26 26 H 1.09006 * 109.47274 * 60.00134 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2965 2.1681 1.1025 5 6 2.1654 1.7985 2.4452 6 1 1.9057 0.7824 2.7028 7 6 2.3711 2.7471 3.4565 8 7 2.3291 2.3838 4.7119 9 14 2.7052 4.5301 3.0106 10 1 2.8859 5.3252 4.2517 11 1 3.9376 4.6116 2.1862 12 1 1.5571 5.0710 2.2395 13 7 2.7178 3.3424 0.6406 14 7 2.7108 3.3289 -0.6446 15 6 2.2897 2.1577 -1.0865 16 8 2.1565 1.7938 -2.3811 17 6 2.5032 2.7676 -3.3677 18 1 -0.3633 0.5138 0.8900 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3632 -1.0277 0.0005 21 1 1.8934 -0.5138 -0.8899 22 1 1.8934 -0.5138 0.8900 23 1 2.0822 1.4755 4.9461 24 1 2.3510 2.3476 -4.3620 25 1 1.8738 3.6491 -3.2450 26 1 3.5496 3.0488 -3.2488 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261216067.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:36 Heat of formation + Delta-G solvation = 0.155903 kcal Electronic energy + Delta-G solvation = -12687.577418 eV Core-core repulsion = 10380.861345 eV Total energy + Delta-G solvation = -2306.716073 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.090 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -43.03813 -39.25124 -36.30362 -35.71830 -31.64594 -31.22981 -28.25499 -27.06286 -24.76504 -22.84066 -21.74466 -20.16426 -18.72570 -17.57099 -17.19839 -16.21991 -15.55042 -15.52252 -15.21194 -15.00894 -14.31281 -13.88831 -13.33758 -12.93374 -12.90164 -12.73148 -12.28588 -12.11910 -11.76230 -11.43910 -11.29273 -10.69505 -10.33270 -9.64334 -9.39456 -6.80178 1.13272 1.27782 1.59177 1.71729 2.00722 2.19514 2.43365 2.86835 3.09849 3.81179 4.13923 4.26401 4.30714 4.41501 4.51961 4.61170 4.66257 4.72942 4.81156 5.10923 5.16444 5.44151 5.50524 6.07441 6.24180 6.55920 6.77309 8.00324 8.26789 Molecular weight = 197.09amu Principal moments of inertia in cm(-1) A = 0.039704 B = 0.014840 C = 0.011297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.051813 B = 1886.310489 C = 2477.910587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.117 3.883 3 N -0.514 5.514 4 C 0.327 3.673 5 C -0.508 4.508 6 H 0.084 0.916 7 C 0.044 3.956 8 N -0.827 5.827 9 Si 1.143 2.857 10 H -0.298 1.298 11 H -0.276 1.276 12 H -0.294 1.294 13 N -0.445 5.445 14 N -0.357 5.357 15 C 0.298 3.702 16 O -0.305 6.305 17 C 0.049 3.951 18 H 0.041 0.959 19 H 0.052 0.948 20 H 0.106 0.894 21 H 0.102 0.898 22 H 0.088 0.912 23 H 0.285 0.715 24 H 0.142 0.858 25 H 0.050 0.950 26 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.664 -4.896 -10.156 11.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.005 4.005 3 N -0.220 5.220 4 C 0.081 3.919 5 C -0.549 4.549 6 H 0.102 0.898 7 C -0.176 4.176 8 N -0.453 5.453 9 Si 0.972 3.028 10 H -0.227 1.227 11 H -0.203 1.203 12 H -0.222 1.222 13 N -0.294 5.294 14 N -0.209 5.209 15 C -0.009 4.009 16 O -0.209 6.209 17 C -0.046 4.046 18 H 0.060 0.940 19 H 0.072 0.928 20 H 0.125 0.875 21 H 0.121 0.879 22 H 0.106 0.894 23 H 0.097 0.903 24 H 0.160 0.840 25 H 0.069 0.931 26 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.883 -2.353 -9.760 10.214 hybrid contribution -0.794 -2.837 -0.539 2.995 sum -2.676 -5.189 -10.299 11.839 Atomic orbital electron populations 1.22041 0.93594 1.04047 1.01554 1.21780 0.96255 0.78160 1.04342 1.45917 1.57699 1.14653 1.03704 1.21479 0.94645 0.86700 0.89090 1.19361 1.48598 0.99772 0.87200 0.89807 1.27684 0.89527 1.08913 0.91461 1.70653 1.33218 1.22970 1.18421 0.82246 0.79344 0.69462 0.71729 1.22739 1.20320 1.22170 1.73884 1.34532 1.19598 1.01340 1.74123 1.24164 1.16877 1.05719 1.21870 1.06007 0.89275 0.83706 1.85651 1.84621 1.42325 1.08333 1.23146 1.00677 0.91659 0.89077 0.93980 0.92838 0.87545 0.87931 0.89374 0.90333 0.84023 0.93076 0.93060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.57 10.24 71.98 0.74 -3.83 15 2 C 0.12 3.99 6.73 86.38 0.58 4.57 15 3 N -0.51 -23.64 2.84 -636.72 -1.81 -25.45 15 4 C 0.33 17.61 7.27 133.30 0.97 18.58 15 5 C -0.51 -27.56 9.50 23.14 0.22 -27.34 15 6 H 0.08 4.39 7.47 -2.91 -0.02 4.37 15 7 C 0.04 2.39 5.52 85.32 0.47 2.86 15 8 N -0.83 -44.74 13.65 21.87 0.30 -44.45 15 9 Si 1.14 58.46 25.90 68.60 1.78 60.23 15 10 H -0.30 -14.26 7.11 99.48 0.71 -13.56 15 11 H -0.28 -14.77 6.76 99.48 0.67 -14.09 15 12 H -0.29 -15.52 7.11 99.48 0.71 -14.81 15 13 N -0.45 -25.33 7.53 -55.03 -0.41 -25.75 15 14 N -0.36 -18.74 11.64 -173.06 -2.01 -20.75 15 15 C 0.30 13.71 8.62 179.40 1.55 15.26 15 16 O -0.31 -11.22 10.51 -84.20 -0.88 -12.11 15 17 C 0.05 1.35 10.69 113.37 1.21 2.56 15 18 H 0.04 1.44 8.14 -2.39 -0.02 1.42 15 19 H 0.05 1.60 8.14 -2.39 -0.02 1.58 15 20 H 0.11 2.27 8.14 -2.39 -0.02 2.25 15 21 H 0.10 2.97 8.14 -2.39 -0.02 2.95 15 22 H 0.09 2.96 7.48 -2.39 -0.02 2.94 15 23 H 0.29 14.68 8.72 -92.71 -0.81 13.87 15 24 H 0.14 2.47 8.14 -2.39 -0.02 2.45 15 25 H 0.05 1.45 8.14 -2.39 -0.02 1.43 15 26 H 0.05 1.45 8.14 -2.38 -0.02 1.43 15 Total: -1.00 -67.16 232.29 3.79 -63.37 By element: Atomic # 1 Polarization: -8.86 SS G_CDS: 1.10 Total: -7.76 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: 5.74 Total: 12.66 kcal Atomic # 7 Polarization: -112.46 SS G_CDS: -3.94 Total: -116.40 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: -0.88 Total: -12.11 kcal Atomic # 14 Polarization: 58.46 SS G_CDS: 1.78 Total: 60.23 kcal Total: -67.16 3.79 -63.37 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261216067.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.529 kcal (2) G-P(sol) polarization free energy of solvation -67.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds