Wall clock time and date at job start Mon Mar 30 2020 01:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35797 * 116.99884 * 2 1 4 4 C 1.34969 * 126.48987 * 359.95532 * 3 2 1 5 5 N 1.34577 * 107.59413 * 180.02562 * 4 3 2 6 6 C 1.30164 * 108.75379 * 0.02562 * 5 4 3 7 7 C 1.50699 * 125.56230 * 180.26674 * 6 5 4 8 8 C 1.53000 * 109.47555 * 89.68941 * 7 6 5 9 9 C 1.50699 * 109.47175 * 180.02562 * 8 7 6 10 10 H 1.07998 * 120.00347 * 359.97438 * 9 8 7 11 11 C 1.37876 * 119.99750 * 179.97438 * 9 8 7 12 12 N 1.31513 * 120.00098 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00017 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.47036 * 90.00328 * 13 11 9 15 15 H 1.48501 * 109.47339 * 210.00099 * 13 11 9 16 16 H 1.48497 * 109.47471 * 330.00305 * 13 11 9 17 17 O 1.34234 * 108.87018 * 359.97438 * 6 5 4 18 18 H 1.08993 * 109.46657 * 180.02562 * 1 2 3 19 19 H 1.08998 * 109.46922 * 299.99969 * 1 2 3 20 20 H 1.08997 * 109.46662 * 60.00407 * 1 2 3 21 21 H 1.07994 * 126.20448 * 0.02562 * 4 3 2 22 22 H 1.09007 * 109.47102 * 209.69004 * 7 6 5 23 23 H 1.09000 * 109.47166 * 329.68528 * 7 6 5 24 24 H 1.09002 * 109.46530 * 299.99981 * 8 7 6 25 25 H 1.09000 * 109.47221 * 59.99621 * 8 7 6 26 26 H 0.97003 * 120.00192 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0456 1.2100 0.0000 4 6 1.4431 2.4177 -0.0008 5 7 2.4094 3.3544 -0.0011 6 6 3.5677 2.7606 -0.0010 7 6 4.9069 3.4517 0.0046 8 6 5.3536 3.6869 1.4489 9 6 6.6925 4.3786 1.4543 10 1 7.1766 4.6253 0.5210 11 6 7.2993 4.6964 2.6508 12 7 6.7100 4.3955 3.7874 13 14 8.9593 5.5531 2.6576 14 1 8.7570 7.0243 2.6547 15 1 9.7144 5.1597 3.8743 16 1 9.7260 5.1565 1.4494 17 8 3.3746 1.4322 -0.0001 18 1 -0.3632 -1.0276 0.0005 19 1 -0.3633 0.5138 0.8900 20 1 -0.3632 0.5138 -0.8900 21 1 0.3786 2.5996 -0.0013 22 1 5.6403 2.8269 -0.5054 23 1 4.8240 4.4087 -0.5106 24 1 4.6202 4.3117 1.9587 25 1 5.4365 2.7299 1.9640 26 1 7.1368 4.6194 4.6292 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261243312.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:54 Heat of formation + Delta-G solvation = -19.456505 kcal Electronic energy + Delta-G solvation = -11920.710152 eV Core-core repulsion = 9580.850870 eV Total energy + Delta-G solvation = -2339.859282 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.94240 -38.65369 -34.55590 -33.86717 -31.67058 -28.59885 -27.43344 -25.24653 -22.18582 -21.84863 -20.30651 -18.44473 -16.97437 -16.43205 -16.00717 -15.12576 -14.99501 -14.44741 -13.47875 -13.29069 -12.83193 -12.28815 -11.84079 -11.61653 -11.25164 -10.96975 -10.95178 -10.62645 -10.17604 -10.00968 -9.72916 -9.21998 -8.38603 -7.87931 -6.03007 -4.07231 1.84765 1.91349 3.07420 3.32587 3.38601 3.41750 4.16084 4.44905 4.70322 4.75683 4.93248 5.05793 5.22889 5.33203 5.50008 6.09224 6.23488 6.36927 6.56327 6.84306 7.07696 7.59858 7.67583 7.93970 8.17195 8.30382 8.98526 9.57005 11.08320 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.090251 B = 0.006584 C = 0.006476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 310.171560 B = 4252.033388 C = 4322.797208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.288 6.288 3 C 0.141 3.859 4 C -0.114 4.114 5 N -0.473 5.473 6 C 0.217 3.783 7 C -0.019 4.019 8 C 0.026 3.974 9 C -0.524 4.524 10 H 0.061 0.939 11 C 0.058 3.942 12 N -0.892 5.892 13 Si 0.897 3.103 14 H -0.280 1.280 15 H -0.286 1.286 16 H -0.273 1.273 17 O -0.194 6.194 18 H 0.111 0.889 19 H 0.061 0.939 20 H 0.060 0.940 21 H 0.178 0.822 22 H 0.082 0.918 23 H 0.099 0.901 24 H 0.027 0.973 25 H 0.021 0.979 26 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.460 -6.496 -7.199 14.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.202 6.202 3 C 0.043 3.957 4 C -0.252 4.252 5 N -0.201 5.201 6 C 0.011 3.989 7 C -0.057 4.057 8 C -0.012 4.012 9 C -0.563 4.563 10 H 0.079 0.921 11 C -0.143 4.143 12 N -0.531 5.531 13 Si 0.725 3.275 14 H -0.206 1.206 15 H -0.212 1.212 16 H -0.197 1.197 17 O -0.084 6.084 18 H 0.129 0.871 19 H 0.080 0.920 20 H 0.079 0.921 21 H 0.196 0.804 22 H 0.100 0.900 23 H 0.117 0.883 24 H 0.045 0.955 25 H 0.039 0.961 26 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.429 -6.057 -7.010 13.950 hybrid contribution 0.551 -0.339 0.217 0.683 sum -9.878 -6.396 -6.793 13.588 Atomic orbital electron populations 1.23182 0.75358 1.04548 1.02175 1.85777 1.22205 1.22320 1.89903 1.20178 0.82510 0.87209 1.05776 1.22862 1.00428 0.87058 1.14860 1.70373 0.97867 1.33150 1.18731 1.27094 0.98425 0.74307 0.99104 1.20613 0.83523 0.97758 1.03839 1.19168 0.96683 0.97793 0.87566 1.21119 1.03633 1.38804 0.92695 0.92113 1.25019 0.97953 0.95817 0.95553 1.69977 1.38744 1.47010 0.97365 0.86517 0.83661 0.79804 0.77561 1.20557 1.21222 1.19749 1.84346 1.22096 1.30323 1.71679 0.87119 0.92012 0.92131 0.80442 0.89963 0.88297 0.95481 0.96052 0.92839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.13 101.05 1.02 1.38 15 2 O -0.29 -4.17 10.57 -42.12 -0.45 -4.61 15 3 C 0.14 2.47 8.36 29.57 0.25 2.71 15 4 C -0.11 -1.92 10.96 -17.51 -0.19 -2.12 15 5 N -0.47 -9.68 11.29 -10.89 -0.12 -9.80 15 6 C 0.22 4.53 7.59 -12.99 -0.10 4.43 15 7 C -0.02 -0.40 5.78 -27.88 -0.16 -0.57 15 8 C 0.03 0.68 4.95 -27.88 -0.14 0.54 15 9 C -0.52 -14.61 9.11 -34.44 -0.31 -14.92 15 10 H 0.06 1.60 7.74 -52.49 -0.41 1.19 15 11 C 0.06 1.67 5.46 -17.82 -0.10 1.57 15 12 N -0.89 -26.90 13.29 55.43 0.74 -26.17 15 13 Si 0.90 21.45 29.54 -169.99 -5.02 16.42 15 14 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 15 H -0.29 -6.81 7.11 56.52 0.40 -6.40 15 16 H -0.27 -6.33 7.11 56.52 0.40 -5.93 15 17 O -0.19 -3.95 10.79 -18.37 -0.20 -4.15 15 18 H 0.11 0.61 8.14 -51.93 -0.42 0.19 15 19 H 0.06 0.47 8.09 -51.93 -0.42 0.05 15 20 H 0.06 0.43 8.09 -51.93 -0.42 0.01 15 21 H 0.18 2.27 7.64 -52.49 -0.40 1.87 15 22 H 0.08 1.59 8.14 -51.92 -0.42 1.16 15 23 H 0.10 1.96 8.14 -51.93 -0.42 1.54 15 24 H 0.03 0.76 8.14 -51.93 -0.42 0.34 15 25 H 0.02 0.59 8.14 -51.93 -0.42 0.17 15 26 H 0.26 7.43 8.31 -40.82 -0.34 7.09 15 LS Contribution 239.73 15.07 3.61 3.61 Total: -1.00 -32.53 239.73 -4.06 -36.59 By element: Atomic # 1 Polarization: -2.03 SS G_CDS: -2.90 Total: -4.92 kcal Atomic # 6 Polarization: -7.24 SS G_CDS: 0.27 Total: -6.97 kcal Atomic # 7 Polarization: -36.58 SS G_CDS: 0.61 Total: -35.97 kcal Atomic # 8 Polarization: -8.12 SS G_CDS: -0.64 Total: -8.76 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -32.53 -4.06 -36.59 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261243312.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.133 kcal (2) G-P(sol) polarization free energy of solvation -32.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds