Wall clock time and date at job start Mon Mar 30 2020 02:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86792 * 120.00226 * 2 1 4 4 H 1.48502 * 109.47250 * 240.00199 * 3 2 1 5 5 H 1.48500 * 109.47381 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47330 * 120.00311 * 3 2 1 7 7 C 1.37881 * 119.99879 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00060 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00062 * 0.02562 * 7 2 1 10 10 O 1.42907 * 109.36705 * 356.73764 * 9 7 2 11 11 C 1.53147 * 109.37086 * 116.48800 * 9 7 2 12 12 C 1.54004 * 108.50324 * 66.06780 * 11 9 7 13 13 H 1.09006 * 113.03767 * 188.79165 * 12 11 9 14 14 C 1.54993 * 107.05500 * 314.11712 * 12 11 9 15 15 C 1.54063 * 104.76240 * 87.42537 * 14 12 11 16 16 N 1.48237 * 106.69832 * 358.98576 * 15 14 12 17 17 C 1.48808 * 105.17379 * 27.48661 * 16 15 14 18 18 C 1.47674 * 108.91430 * 271.83164 * 16 15 14 19 19 H 0.97005 * 120.00028 * 0.02562 * 1 2 3 20 20 H 0.96701 * 114.00110 * 299.75537 * 10 9 7 21 21 H 1.09006 * 109.62958 * 185.76979 * 11 9 7 22 22 H 1.08998 * 109.63399 * 306.16089 * 11 9 7 23 23 H 1.09002 * 110.38381 * 206.24744 * 14 12 11 24 24 H 1.09002 * 110.38051 * 328.49341 * 14 12 11 25 25 H 1.08999 * 110.00855 * 118.29845 * 15 14 12 26 26 H 1.08998 * 110.01152 * 239.67676 * 15 14 12 27 27 H 1.09002 * 110.92733 * 199.10181 * 17 16 15 28 28 H 1.08999 * 110.93139 * 75.43810 * 17 16 15 29 29 H 1.08994 * 109.50281 * 287.14551 * 18 16 15 30 30 H 1.09005 * 109.49848 * 167.02571 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 8 -0.1517 -2.2366 0.0747 11 6 1.5555 -3.2604 -1.2952 12 6 3.0426 -3.6608 -1.2881 13 1 3.3779 -4.0731 -2.2398 14 6 3.8475 -2.4122 -0.8461 15 6 3.8732 -2.4861 0.6926 16 7 3.1029 -3.6939 1.0739 17 6 3.2342 -4.6209 -0.0827 18 6 1.6782 -3.3298 1.2101 19 1 -0.4850 0.8401 -0.0004 20 1 -0.4192 -1.7559 0.8699 21 1 0.9355 -4.1554 -1.3480 22 1 1.3495 -2.6211 -2.1536 23 1 4.8610 -2.4530 -1.2450 24 1 3.3470 -1.5017 -1.1757 25 1 4.9011 -2.5726 1.0447 26 1 3.4067 -1.5969 1.1166 27 1 2.4537 -5.3815 -0.0627 28 1 4.2227 -5.0798 -0.1036 29 1 1.5372 -2.7458 2.1195 30 1 1.0744 -4.2359 1.2613 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261265272.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:52 Heat of formation + Delta-G solvation = 55.949962 kcal Electronic energy + Delta-G solvation = -13966.060214 eV Core-core repulsion = 11765.303896 eV Total energy + Delta-G solvation = -2200.756318 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.53107 -34.94069 -32.11292 -31.03691 -29.74540 -28.86467 -24.39326 -23.44237 -20.91551 -19.68574 -18.61632 -17.70401 -15.42234 -15.08720 -14.18732 -13.53618 -13.29759 -12.94902 -12.62220 -12.28233 -11.70057 -11.42081 -11.00621 -10.90811 -10.64202 -10.51361 -10.16357 -10.11507 -9.87196 -9.50104 -9.20242 -8.92108 -8.52992 -7.66894 -7.32905 -5.84885 -4.06456 3.24484 3.30677 3.32748 4.34333 4.93723 5.17587 5.41813 5.65665 5.80731 6.09102 6.14731 6.29897 6.31685 6.35129 6.39667 6.61039 6.72698 6.81715 6.85889 6.94235 7.12611 7.25787 7.33127 7.55928 7.76102 7.77743 8.02036 8.17608 8.75037 9.50648 9.82806 10.98261 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.042258 B = 0.018186 C = 0.015368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.442639 B = 1539.273170 C = 1821.551272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.068 3.932 3 Si 0.880 3.120 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.616 4.616 8 H 0.145 0.855 9 C 0.220 3.780 10 O -0.550 6.550 11 C -0.093 4.093 12 C -0.115 4.115 13 H 0.072 0.928 14 C -0.174 4.174 15 C 0.001 3.999 16 N -0.494 5.494 17 C 0.029 3.971 18 C 0.015 3.985 19 H 0.254 0.746 20 H 0.371 0.629 21 H 0.034 0.966 22 H 0.057 0.943 23 H 0.032 0.968 24 H 0.139 0.861 25 H 0.044 0.956 26 H 0.135 0.865 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.866 -3.750 0.020 6.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.651 4.651 8 H 0.162 0.838 9 C 0.178 3.822 10 O -0.357 6.357 11 C -0.131 4.131 12 C -0.135 4.135 13 H 0.090 0.910 14 C -0.212 4.212 15 C -0.126 4.126 16 N -0.217 5.217 17 C -0.100 4.100 18 C -0.115 4.115 19 H 0.065 0.935 20 H 0.223 0.777 21 H 0.053 0.947 22 H 0.076 0.924 23 H 0.050 0.950 24 H 0.157 0.843 25 H 0.062 0.938 26 H 0.152 0.848 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.848 -4.174 0.039 6.397 hybrid contribution 0.081 1.491 -0.362 1.537 sum 4.928 -2.683 -0.323 5.620 Atomic orbital electron populations 1.70035 1.05767 1.25437 1.48601 1.25272 0.94744 0.99027 0.94506 0.86865 0.79844 0.83773 0.78804 1.20081 1.21303 1.20015 1.24331 0.98137 0.90864 1.51798 0.83829 1.19310 0.81832 0.91890 0.89194 1.86210 1.22053 1.78384 1.49093 1.21733 0.92995 0.98076 1.00270 1.22892 0.96935 0.95934 0.97698 0.90969 1.24111 0.97883 1.02537 0.96628 1.24177 0.96935 0.96885 0.94624 1.66314 1.08972 1.10548 1.35824 1.23501 1.00316 0.95896 0.90284 1.23385 0.88495 0.98547 1.01032 0.93493 0.77676 0.94747 0.92413 0.94956 0.84336 0.93795 0.84757 0.91601 0.91554 0.91728 0.93546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.56 9.99 55.43 0.55 -23.00 16 2 C 0.07 1.77 5.42 -17.82 -0.10 1.67 16 3 Si 0.88 19.95 29.54 -169.99 -5.02 14.93 16 4 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.62 -15.28 4.41 -34.44 -0.15 -15.43 16 8 H 0.15 3.35 1.77 -115.41 -0.20 3.14 16 9 C 0.22 5.34 1.12 -91.70 -0.10 5.24 16 10 O -0.55 -14.74 11.03 -35.23 -0.39 -15.12 16 11 C -0.09 -2.09 4.90 -26.13 -0.13 -2.22 16 12 C -0.11 -2.22 4.35 -87.83 -0.38 -2.60 16 13 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 14 C -0.17 -3.46 5.56 -25.12 -0.14 -3.60 16 15 C 0.00 0.02 5.91 -2.53 -0.01 0.01 16 16 N -0.49 -10.12 6.07 -255.90 -1.55 -11.68 16 17 C 0.03 0.53 6.41 -1.55 -0.01 0.52 16 18 C 0.01 0.32 5.23 -3.40 -0.02 0.30 16 19 H 0.25 6.75 8.31 -40.82 -0.34 6.41 16 20 H 0.37 9.92 7.27 45.56 0.33 10.25 16 21 H 0.03 0.75 8.07 -51.93 -0.42 0.33 16 22 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 23 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.14 3.09 4.71 -52.01 -0.24 2.85 16 25 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.14 2.98 4.75 -51.93 -0.25 2.74 16 27 H 0.07 1.18 7.70 -51.93 -0.40 0.78 16 28 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 29 H 0.06 1.46 8.14 -51.93 -0.42 1.04 16 30 H 0.05 1.00 7.87 -51.93 -0.41 0.59 16 LS Contribution 220.52 15.07 3.32 3.32 Total: -1.00 -26.87 220.52 -7.39 -34.26 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -3.26 Total: 13.40 kcal Atomic # 6 Polarization: -15.06 SS G_CDS: -1.04 Total: -16.10 kcal Atomic # 7 Polarization: -33.68 SS G_CDS: -1.00 Total: -34.68 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: -0.39 Total: -15.12 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Total LS contribution 3.32 Total: 3.32 kcal Total: -26.87 -7.39 -34.26 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261265272.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.206 kcal (2) G-P(sol) polarization free energy of solvation -26.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds