Wall clock time and date at job start Mon Mar 30 2020 02:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47029 * 2 1 4 4 C 1.50696 * 109.46911 * 120.00768 * 2 1 3 5 5 N 1.27640 * 125.77355 * 354.96921 * 4 2 1 6 6 O 1.41377 * 113.17582 * 180.31087 * 5 4 2 7 7 C 1.44254 * 107.50593 * 342.62660 * 6 5 4 8 8 H 1.08993 * 111.00891 * 143.21658 * 7 6 5 9 9 C 1.53000 * 111.01195 * 267.05017 * 7 6 5 10 10 C 1.50703 * 109.46912 * 293.54436 * 9 7 6 11 11 H 1.07996 * 119.99751 * 0.02562 * 10 9 7 12 12 C 1.37877 * 120.00001 * 180.02562 * 10 9 7 13 13 N 1.31517 * 120.00094 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99955 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47171 * 89.99544 * 14 12 10 16 16 H 1.48500 * 109.46632 * 209.99795 * 14 12 10 17 17 H 1.48494 * 109.47053 * 329.99231 * 14 12 10 18 18 C 1.51682 * 125.76735 * 174.95556 * 4 2 1 19 19 H 1.09011 * 109.47021 * 59.99813 * 1 2 3 20 20 H 1.08998 * 109.47434 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.47476 * 299.99464 * 1 2 3 22 22 H 1.09004 * 109.46924 * 240.00121 * 2 1 3 23 23 H 1.09005 * 109.46871 * 179.97438 * 3 2 1 24 24 H 1.08994 * 109.47351 * 300.00297 * 3 2 1 25 25 H 1.09002 * 109.46697 * 60.00474 * 3 2 1 26 26 H 1.09002 * 109.47398 * 53.54514 * 9 7 6 27 27 H 1.09001 * 109.47194 * 173.54694 * 9 7 6 28 28 H 0.97000 * 120.00333 * 179.97438 * 13 12 10 29 29 H 1.09000 * 110.80970 * 77.04518 * 18 4 2 30 30 H 1.09008 * 110.80632 * 313.53877 * 18 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7106 1.2303 5 7 1.3084 -1.1557 2.1827 6 8 2.0584 -1.7723 3.2103 7 6 3.3647 -2.0697 2.6755 8 1 4.1381 -1.9238 3.4294 9 6 3.4154 -3.4903 2.1095 10 6 3.2626 -4.4840 3.2322 11 1 3.1411 -4.1369 4.2477 12 6 3.2781 -5.8361 2.9630 13 7 3.4255 -6.2587 1.7263 14 14 3.0880 -7.0678 4.3545 15 1 1.6485 -7.3754 4.5502 16 1 3.8191 -8.3149 4.0148 17 1 3.6456 -6.4921 5.6046 18 6 3.4837 -1.0180 1.5462 19 1 -0.3634 0.5139 -0.8901 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3634 0.5137 0.8900 22 1 1.8933 -0.5138 -0.8900 23 1 3.1300 1.4425 0.0005 24 1 1.6766 1.9564 -0.8899 25 1 1.6767 1.9563 0.8901 26 1 2.6055 -3.6249 1.3925 27 1 4.3718 -3.6491 1.6114 28 1 3.4367 -7.2100 1.5369 29 1 4.0001 -0.1260 1.9008 30 1 3.9884 -1.4390 0.6766 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261312451.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:11 Heat of formation + Delta-G solvation = -26.703067 kcal Electronic energy + Delta-G solvation = -12535.006490 eV Core-core repulsion = 10330.666068 eV Total energy + Delta-G solvation = -2204.340422 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.12356 -36.85624 -35.30474 -32.74182 -32.42224 -29.38953 -27.88174 -25.46480 -23.84082 -22.35088 -19.82223 -18.55851 -17.58116 -16.82377 -16.10498 -15.82214 -15.47104 -14.72456 -14.57683 -14.16408 -13.67935 -13.32570 -13.08095 -12.95304 -12.82811 -12.65979 -12.44538 -12.18446 -12.08248 -11.97615 -11.67349 -11.34272 -11.28604 -10.64678 -10.14430 -8.26481 -6.36138 1.04144 1.35098 1.37722 1.48581 2.28892 2.38365 3.06790 3.21089 3.67471 3.76960 4.05584 4.17799 4.24773 4.36570 4.55540 4.72907 4.83010 4.84659 4.89740 5.01164 5.07279 5.24518 5.28731 5.40901 5.42781 5.50806 5.69353 6.14080 6.63274 6.76991 7.31788 8.85473 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.062287 B = 0.008065 C = 0.008010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.420796 B = 3470.843503 C = 3494.954124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.027 4.027 3 C -0.135 4.135 4 C 0.091 3.909 5 N -0.333 5.333 6 O -0.231 6.231 7 C 0.045 3.955 8 H 0.108 0.892 9 C 0.020 3.980 10 C -0.537 4.537 11 H 0.052 0.948 12 C 0.002 3.998 13 N -0.931 5.931 14 Si 0.965 3.035 15 H -0.278 1.278 16 H -0.274 1.274 17 H -0.264 1.264 18 C -0.142 4.142 19 H 0.092 0.908 20 H 0.036 0.964 21 H 0.051 0.949 22 H 0.113 0.887 23 H 0.071 0.929 24 H 0.092 0.908 25 H 0.051 0.949 26 H -0.015 1.015 27 H 0.019 0.981 28 H 0.265 0.735 29 H 0.125 0.875 30 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.472 14.085 -5.290 15.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.047 4.047 3 C -0.193 4.193 4 C -0.102 4.102 5 N -0.076 5.076 6 O -0.248 6.248 7 C -0.013 4.013 8 H 0.126 0.874 9 C -0.017 4.017 10 C -0.575 4.575 11 H 0.070 0.930 12 C -0.196 4.196 13 N -0.571 5.571 14 Si 0.789 3.211 15 H -0.203 1.203 16 H -0.199 1.199 17 H -0.188 1.188 18 C -0.181 4.181 19 H 0.111 0.889 20 H 0.055 0.945 21 H 0.070 0.930 22 H 0.130 0.870 23 H 0.090 0.910 24 H 0.111 0.889 25 H 0.071 0.929 26 H 0.004 0.996 27 H 0.038 0.962 28 H 0.074 0.926 29 H 0.143 0.857 30 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -1.500 13.744 -4.738 14.615 hybrid contribution 0.741 -1.216 0.485 1.504 sum -0.759 12.528 -4.254 13.252 Atomic orbital electron populations 1.21764 0.93576 1.01601 1.03062 1.20086 0.96847 0.97034 0.90694 1.21783 1.02128 0.91979 1.03431 1.26917 0.93924 0.93101 0.96289 1.77663 1.21187 1.09281 0.99501 1.91173 1.25798 1.77293 1.30520 1.23906 0.85694 0.95473 0.96206 0.87397 1.19318 0.95682 0.91278 0.95418 1.21478 1.49659 0.92051 0.94315 0.92964 1.25923 0.94654 1.00630 0.98393 1.70065 1.51186 1.15428 1.20452 0.85448 0.78282 0.78072 0.79277 1.20342 1.19913 1.18773 1.23208 0.95190 0.99917 0.99784 0.88907 0.94505 0.93012 0.86960 0.90999 0.88891 0.92934 0.99616 0.96234 0.92608 0.85714 0.87213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 8.67 71.98 0.62 -2.67 16 2 C -0.03 -0.62 3.37 -11.54 -0.04 -0.66 16 3 C -0.14 -2.11 9.17 71.98 0.66 -1.45 16 4 C 0.09 3.03 6.42 46.90 0.30 3.33 16 5 N -0.33 -14.19 11.71 -40.62 -0.48 -14.67 16 6 O -0.23 -11.39 12.08 -38.29 -0.46 -11.85 16 7 C 0.05 2.01 3.75 31.20 0.12 2.12 16 8 H 0.11 4.46 8.14 -2.39 -0.02 4.44 16 9 C 0.02 1.11 4.70 29.85 0.14 1.25 16 10 C -0.54 -32.43 8.96 25.60 0.23 -32.20 16 11 H 0.05 3.14 7.74 -2.91 -0.02 3.12 16 12 C 0.00 0.11 5.46 84.65 0.46 0.57 16 13 N -0.93 -57.86 13.29 21.45 0.28 -57.57 16 14 Si 0.96 46.44 29.54 68.60 2.03 48.47 16 15 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 16 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 17 H -0.26 -12.17 7.11 99.48 0.71 -11.47 16 18 C -0.14 -4.56 6.61 30.77 0.20 -4.36 16 19 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 20 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 21 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 22 H 0.11 2.22 8.14 -2.38 -0.02 2.20 16 23 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 24 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 26 H -0.01 -0.89 8.14 -2.39 -0.02 -0.90 16 27 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 29 H 0.12 3.09 8.14 -2.39 -0.02 3.07 16 30 H 0.11 3.24 7.92 -2.38 -0.02 3.23 16 Total: -1.00 -73.25 258.58 5.17 -68.08 By element: Atomic # 1 Polarization: 0.52 SS G_CDS: 1.10 Total: 1.61 kcal Atomic # 6 Polarization: -36.77 SS G_CDS: 2.70 Total: -34.07 kcal Atomic # 7 Polarization: -72.05 SS G_CDS: -0.19 Total: -72.24 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: -0.46 Total: -11.85 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -73.25 5.17 -68.08 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261312451.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.381 kcal (2) G-P(sol) polarization free energy of solvation -73.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds