Wall clock time and date at job start Mon Mar 30 2020 01:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35352 * 126.91245 * 2 1 4 4 C 1.50700 * 126.75197 * 0.02562 * 3 2 1 5 5 O 1.42897 * 109.47280 * 270.24571 * 4 3 2 6 6 N 1.33775 * 106.49643 * 180.24182 * 3 2 1 7 7 N 1.28629 * 108.88590 * 359.77853 * 6 3 2 8 8 N 1.28716 * 110.17872 * 359.97438 * 7 6 3 9 9 C 1.46506 * 125.86711 * 179.97438 * 8 7 6 10 10 C 1.50702 * 109.46851 * 90.03260 * 9 8 7 11 11 H 1.07998 * 120.00221 * 359.97438 * 10 9 8 12 12 C 1.37881 * 119.99982 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99617 * 359.97438 * 12 10 9 14 14 Si 1.86793 * 119.99935 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47291 * 59.99738 * 14 12 10 16 16 H 1.48506 * 109.46846 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47327 * 299.99974 * 14 12 10 18 18 H 1.08999 * 109.47484 * 270.12865 * 1 2 3 19 19 H 1.08995 * 109.47230 * 30.13173 * 1 2 3 20 20 H 1.08999 * 109.47184 * 150.13295 * 1 2 3 21 21 H 1.09004 * 109.46876 * 30.24757 * 4 3 2 22 22 H 1.09000 * 109.47267 * 150.24676 * 4 3 2 23 23 H 0.96699 * 114.00026 * 180.02562 * 5 4 3 24 24 H 1.08994 * 109.46947 * 210.02680 * 9 8 7 25 25 H 1.08997 * 109.47271 * 330.03197 * 9 8 7 26 26 H 0.96998 * 119.99644 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3199 1.0822 0.0000 4 6 1.8960 2.5284 0.0005 5 8 1.7560 2.9842 -1.3465 6 7 3.5736 0.6156 -0.0054 7 7 3.5392 -0.6703 -0.0039 8 7 2.3197 -1.0819 0.0029 9 6 1.8860 -2.4813 0.0061 10 6 1.7441 -2.9599 1.4281 11 1 1.9562 -2.2889 2.2474 12 6 1.3446 -4.2546 1.6830 13 7 1.0868 -5.0718 0.6853 14 14 1.1694 -4.8481 3.4455 15 1 0.1611 -4.0161 4.1500 16 1 0.7309 -6.2669 3.4488 17 1 2.4775 -4.7332 4.1389 18 1 -0.3634 0.0023 1.0276 19 1 -0.3633 0.8887 -0.5158 20 1 -0.3633 -0.8912 -0.5118 21 1 0.9420 2.6272 0.5186 22 1 2.6501 3.1279 0.5104 23 1 1.4849 3.9093 -1.4225 24 1 0.9259 -2.5652 -0.5030 25 1 2.6260 -3.0922 -0.5107 26 1 0.8054 -5.9825 0.8647 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261319774.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:19 Heat of formation + Delta-G solvation = 6.902420 kcal Electronic energy + Delta-G solvation = -12288.749644 eV Core-core repulsion = 9982.326122 eV Total energy + Delta-G solvation = -2306.423522 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.090 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -44.13411 -37.79248 -36.30410 -34.42928 -33.81961 -30.11364 -28.78653 -26.81889 -25.73022 -22.08468 -21.66899 -19.05833 -18.36362 -17.84133 -16.89731 -16.30300 -15.78279 -15.46067 -14.56149 -14.47488 -14.17996 -13.82416 -13.39146 -13.18147 -12.91969 -12.72814 -12.39297 -12.29174 -12.04224 -11.83397 -10.90913 -10.78999 -10.78600 -9.93123 -8.43419 -6.60503 0.78459 1.38249 1.40450 1.45100 1.49203 1.76885 2.31603 2.90706 3.37512 3.74373 3.92856 4.05942 4.21694 4.46373 4.60833 4.68943 4.79128 4.91477 5.01521 5.27088 5.34681 5.43413 5.63657 5.82979 6.46426 7.03767 7.11157 7.64156 8.65846 Molecular weight = 197.09amu Principal moments of inertia in cm(-1) A = 0.060433 B = 0.008906 C = 0.008745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 463.215357 B = 3143.103483 C = 3201.181581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.003 4.003 3 C -0.061 4.061 4 C 0.177 3.823 5 O -0.588 6.588 6 N -0.302 5.302 7 N -0.137 5.137 8 N -0.266 5.266 9 C 0.253 3.747 10 C -0.561 4.561 11 H 0.054 0.946 12 C 0.029 3.971 13 N -0.913 5.913 14 Si 0.975 3.025 15 H -0.261 1.261 16 H -0.272 1.272 17 H -0.276 1.276 18 H 0.092 0.908 19 H 0.113 0.887 20 H 0.069 0.931 21 H 0.097 0.903 22 H 0.071 0.929 23 H 0.404 0.596 24 H 0.065 0.935 25 H 0.038 0.962 26 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.846 11.393 0.572 12.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.138 4.138 3 C -0.202 4.202 4 C 0.098 3.902 5 O -0.397 6.397 6 N -0.167 5.167 7 N -0.115 5.115 8 N -0.059 5.059 9 C 0.135 3.865 10 C -0.599 4.599 11 H 0.072 0.928 12 C -0.173 4.173 13 N -0.551 5.551 14 Si 0.799 3.201 15 H -0.186 1.186 16 H -0.197 1.197 17 H -0.202 1.202 18 H 0.110 0.890 19 H 0.131 0.869 20 H 0.088 0.912 21 H 0.115 0.885 22 H 0.089 0.911 23 H 0.255 0.745 24 H 0.083 0.917 25 H 0.056 0.944 26 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.210 10.131 0.363 10.977 hybrid contribution -0.892 -0.111 0.730 1.157 sum -5.102 10.021 1.093 11.298 Atomic orbital electron populations 1.20428 0.83446 1.04746 1.04459 1.22743 0.98386 0.86098 1.06601 1.22138 0.88893 0.98073 1.11047 1.20105 1.01095 0.84923 0.84084 1.86506 1.92426 1.34342 1.26474 1.74826 1.22728 1.01348 1.17796 1.78167 1.03907 1.06615 1.22804 1.47929 1.04338 1.10635 1.43027 1.19757 0.96662 0.70761 0.99365 1.21223 1.49531 0.98415 0.90775 0.92786 1.25721 0.93393 0.95641 1.02586 1.69981 1.44400 1.07358 1.33316 0.85338 0.78859 0.77781 0.78156 1.18587 1.19665 1.20156 0.88988 0.86891 0.91234 0.88476 0.91098 0.74466 0.91678 0.94438 0.91390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.13 9.86 71.23 0.70 -1.43 15 2 C 0.00 -0.12 7.00 41.35 0.29 0.17 15 3 C -0.06 -2.37 6.88 41.60 0.29 -2.08 15 4 C 0.18 4.56 7.30 71.24 0.52 5.08 15 5 O -0.59 -14.53 13.64 -148.98 -2.03 -16.57 15 6 N -0.30 -14.15 12.41 -48.60 -0.60 -14.76 15 7 N -0.14 -7.00 13.16 37.02 0.49 -6.52 15 8 N -0.27 -12.89 3.32 -338.10 -1.12 -14.01 15 9 C 0.25 12.99 5.94 85.63 0.51 13.50 15 10 C -0.56 -30.37 9.39 25.60 0.24 -30.13 15 11 H 0.05 3.00 7.81 -2.91 -0.02 2.97 15 12 C 0.03 1.52 5.46 84.66 0.46 1.98 15 13 N -0.91 -49.83 13.29 21.45 0.28 -49.55 15 14 Si 0.98 41.39 29.54 68.60 2.03 43.42 15 15 H -0.26 -10.56 7.11 99.48 0.71 -9.85 15 16 H -0.27 -11.01 7.11 99.48 0.71 -10.31 15 17 H -0.28 -11.83 7.11 99.48 0.71 -11.12 15 18 H 0.09 2.48 8.14 -2.39 -0.02 2.46 15 19 H 0.11 2.50 7.99 -2.39 -0.02 2.48 15 20 H 0.07 2.15 7.16 -2.39 -0.02 2.13 15 21 H 0.10 1.78 7.99 -2.38 -0.02 1.76 15 22 H 0.07 1.66 8.14 -2.39 -0.02 1.64 15 23 H 0.40 4.68 9.12 -74.06 -0.68 4.01 15 24 H 0.07 3.24 7.11 -2.39 -0.02 3.22 15 25 H 0.04 2.08 8.14 -2.39 -0.02 2.06 15 26 H 0.28 14.11 8.31 -92.71 -0.77 13.34 15 Total: -1.00 -68.68 238.42 2.57 -66.11 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: 0.52 Total: 4.78 kcal Atomic # 6 Polarization: -15.92 SS G_CDS: 3.01 Total: -12.91 kcal Atomic # 7 Polarization: -83.88 SS G_CDS: -0.95 Total: -84.83 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: -2.03 Total: -16.57 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.42 kcal Total: -68.68 2.57 -66.11 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261319774.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.013 kcal (2) G-P(sol) polarization free energy of solvation -68.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds