Wall clock time and date at job start Mon Mar 30 2020 02:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00233 * 2 1 4 4 H 1.48509 * 109.46747 * 240.00128 * 3 2 1 5 5 H 1.48504 * 109.47001 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47426 * 119.99923 * 3 2 1 7 7 C 1.37882 * 119.99714 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99773 * 180.02562 * 7 2 1 9 9 C 1.50693 * 119.99947 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.46831 * 179.97438 * 9 7 2 11 11 C 1.44133 * 110.99834 * 190.00176 * 10 9 7 12 12 C 1.52259 * 104.84062 * 224.95475 * 11 10 9 13 13 C 1.46818 * 114.41479 * 266.82989 * 12 11 10 14 14 C 1.54646 * 106.17182 * 58.36523 * 13 12 11 15 15 O 1.20763 * 120.66618 * 114.09428 * 14 13 12 16 16 C 1.48155 * 118.66799 * 294.37357 * 14 13 12 17 17 C 1.48780 * 111.00412 * 314.46669 * 10 9 7 18 18 H 0.96998 * 119.99541 * 359.97438 * 1 2 3 19 19 H 1.08999 * 109.47386 * 60.00037 * 9 7 2 20 20 H 1.08997 * 109.47553 * 299.99849 * 9 7 2 21 21 H 1.08994 * 110.35830 * 106.12879 * 11 10 9 22 22 H 1.09002 * 110.35529 * 343.78064 * 11 10 9 23 23 H 1.08998 * 108.49927 * 145.54694 * 12 11 10 24 24 H 1.09003 * 108.37135 * 28.01005 * 12 11 10 25 25 H 1.09002 * 110.10747 * 299.19718 * 13 12 11 26 26 H 1.09007 * 110.10668 * 177.52570 * 13 12 11 27 27 H 1.09000 * 108.07002 * 208.74421 * 16 14 13 28 28 H 1.09003 * 108.06822 * 325.26842 * 16 14 13 29 29 H 1.09000 * 109.20635 * 317.34603 * 17 10 9 30 30 H 1.09004 * 109.19883 * 76.68120 * 17 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 1.5340 -4.8694 -0.2332 12 6 2.1262 -5.8262 0.7925 13 6 3.2688 -6.6081 0.3041 14 6 4.3350 -5.5805 -0.1416 15 8 5.3883 -5.4930 0.4426 16 6 4.0358 -4.7011 -1.2958 17 6 3.2916 -3.3888 -0.9907 18 1 -0.4849 0.8401 0.0004 19 1 0.6246 -2.5571 -0.8897 20 1 0.6240 -2.5567 0.8903 21 1 1.7352 -5.2248 -1.2437 22 1 0.4611 -4.7601 -0.0746 23 1 1.3459 -6.5168 1.1122 24 1 2.4485 -5.2463 1.6574 25 1 2.9664 -7.2253 -0.5419 26 1 3.6636 -7.2345 1.1042 27 1 4.9787 -4.4453 -1.7792 28 1 3.4376 -5.2696 -2.0078 29 1 2.8603 -2.9969 -1.9118 30 1 3.9981 -2.6626 -0.5885 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261322034.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:30 Heat of formation + Delta-G solvation = -33.901759 kcal Electronic energy + Delta-G solvation = -12830.310036 eV Core-core repulsion = 10625.657455 eV Total energy + Delta-G solvation = -2204.652581 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.67914 -37.17034 -33.70453 -32.28370 -31.01252 -27.53496 -24.80972 -24.20839 -21.84228 -19.87725 -18.67493 -16.47922 -15.93624 -15.46453 -14.80820 -14.61838 -14.27552 -13.43190 -13.28006 -12.98233 -12.63699 -12.05814 -11.91866 -11.44747 -10.94926 -10.81205 -10.73653 -10.58412 -10.47142 -10.42039 -9.78851 -9.12930 -9.08650 -8.50560 -7.25664 -6.07508 -4.09509 2.29510 3.31456 3.35651 3.39023 4.30607 4.40332 4.81076 5.16033 5.25143 5.29605 5.37617 5.41676 5.55741 5.75101 5.91008 6.03399 6.10183 6.19228 6.42789 6.45277 6.59782 6.72031 7.25456 7.38561 7.75577 7.81653 7.97615 8.14288 8.53798 8.97725 9.55718 11.03577 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.051915 B = 0.009646 C = 0.008663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.210100 B = 2902.044331 C = 3231.383757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.521 4.521 8 H 0.065 0.935 9 C 0.191 3.809 10 N -0.544 5.544 11 C 0.048 3.952 12 C -0.119 4.119 13 C -0.154 4.154 14 C 0.380 3.620 15 O -0.468 6.468 16 C -0.181 4.181 17 C 0.086 3.914 18 H 0.262 0.738 19 H -0.007 1.007 20 H 0.034 0.966 21 H 0.044 0.956 22 H 0.068 0.932 23 H 0.059 0.941 24 H 0.079 0.921 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.050 0.950 30 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.320 -10.338 -2.749 11.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.724 3.276 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.559 4.559 8 H 0.083 0.917 9 C 0.066 3.934 10 N -0.269 5.269 11 C -0.081 4.081 12 C -0.157 4.157 13 C -0.192 4.192 14 C 0.256 3.744 15 O -0.342 6.342 16 C -0.220 4.220 17 C -0.042 4.042 18 H 0.072 0.928 19 H 0.011 0.989 20 H 0.052 0.948 21 H 0.062 0.938 22 H 0.087 0.913 23 H 0.078 0.922 24 H 0.097 0.903 25 H 0.103 0.897 26 H 0.101 0.899 27 H 0.102 0.898 28 H 0.097 0.903 29 H 0.068 0.932 30 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.924 -10.177 -1.978 11.086 hybrid contribution -0.128 1.005 -0.864 1.332 sum 3.796 -9.172 -2.843 10.326 Atomic orbital electron populations 1.69945 1.06066 1.26967 1.50552 1.24990 0.94856 0.99356 0.95173 0.86580 0.79495 0.82760 0.78728 1.20241 1.21295 1.20095 1.21266 0.93522 0.90278 1.50856 0.91734 1.19845 0.90197 0.87139 0.96220 1.62450 1.13707 1.03105 1.47603 1.21685 0.98138 0.91607 0.96682 1.20448 0.96222 0.98079 1.00991 1.21730 0.97184 0.97846 1.02439 1.24788 0.85491 0.82266 0.81859 1.90353 1.26126 1.66135 1.51613 1.22008 1.02865 0.98873 0.98234 1.22314 0.94176 0.92435 0.95256 0.92810 0.98913 0.94755 0.93796 0.91307 0.92240 0.90253 0.89716 0.89880 0.89808 0.90344 0.93159 0.90154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.29 13.29 55.43 0.74 -25.55 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.52 -14.36 8.50 -34.44 -0.29 -14.65 16 8 H 0.06 1.75 5.98 -52.49 -0.31 1.44 16 9 C 0.19 4.84 4.65 -4.98 -0.02 4.82 16 10 N -0.54 -11.31 4.05 -236.62 -0.96 -12.27 16 11 C 0.05 0.81 5.48 -5.68 -0.03 0.78 16 12 C -0.12 -1.73 5.13 -30.07 -0.15 -1.88 16 13 C -0.15 -1.99 6.09 -28.82 -0.18 -2.16 16 14 C 0.38 6.11 6.22 -28.22 -0.18 5.93 16 15 O -0.47 -9.05 17.88 6.00 0.11 -8.94 16 16 C -0.18 -2.75 4.88 -28.61 -0.14 -2.89 16 17 C 0.09 1.63 4.89 -2.30 -0.01 1.62 16 18 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 19 H -0.01 -0.19 8.07 -51.93 -0.42 -0.60 16 20 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 21 H 0.04 0.65 5.92 -51.93 -0.31 0.34 16 22 H 0.07 1.17 7.62 -51.93 -0.40 0.78 16 23 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.08 1.36 7.79 -51.93 -0.40 0.95 16 25 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 26 H 0.08 1.01 8.14 -51.92 -0.42 0.59 16 27 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.08 0.99 6.87 -51.93 -0.36 0.63 16 29 H 0.05 0.98 7.98 -51.93 -0.41 0.56 16 30 H 0.08 1.67 6.64 -51.93 -0.34 1.33 16 LS Contribution 243.26 15.07 3.67 3.67 Total: -1.00 -30.43 243.26 -6.78 -37.20 By element: Atomic # 1 Polarization: 0.52 SS G_CDS: -4.20 Total: -3.69 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: -1.10 Total: -6.90 kcal Atomic # 7 Polarization: -37.60 SS G_CDS: -0.22 Total: -37.82 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.11 Total: -8.94 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -30.43 -6.78 -37.20 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261322034.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.303 kcal (2) G-P(sol) polarization free energy of solvation -30.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds