Wall clock time and date at job start Mon Mar 30 2020 02:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00233 * 2 1 4 4 H 1.48509 * 109.46747 * 240.00128 * 3 2 1 5 5 H 1.48504 * 109.47001 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47426 * 119.99923 * 3 2 1 7 7 C 1.37882 * 119.99714 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99773 * 180.02562 * 7 2 1 9 9 C 1.50693 * 119.99947 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.46831 * 179.97438 * 9 7 2 11 11 C 1.44133 * 110.99834 * 190.00176 * 10 9 7 12 12 C 1.52259 * 104.84062 * 224.95475 * 11 10 9 13 13 C 1.46818 * 114.41479 * 266.82989 * 12 11 10 14 14 C 1.54646 * 106.17182 * 58.36523 * 13 12 11 15 15 O 1.20763 * 120.66618 * 114.09428 * 14 13 12 16 16 C 1.48155 * 118.66799 * 294.37357 * 14 13 12 17 17 C 1.48780 * 111.00412 * 314.46669 * 10 9 7 18 18 H 0.96998 * 119.99541 * 359.97438 * 1 2 3 19 19 H 1.08999 * 109.47386 * 60.00037 * 9 7 2 20 20 H 1.08997 * 109.47553 * 299.99849 * 9 7 2 21 21 H 1.08994 * 110.35830 * 106.12879 * 11 10 9 22 22 H 1.09002 * 110.35529 * 343.78064 * 11 10 9 23 23 H 1.08998 * 108.49927 * 145.54694 * 12 11 10 24 24 H 1.09003 * 108.37135 * 28.01005 * 12 11 10 25 25 H 1.09002 * 110.10747 * 299.19718 * 13 12 11 26 26 H 1.09007 * 110.10668 * 177.52570 * 13 12 11 27 27 H 1.09000 * 108.07002 * 208.74421 * 16 14 13 28 28 H 1.09003 * 108.06822 * 325.26842 * 16 14 13 29 29 H 1.09000 * 109.20635 * 317.34603 * 17 10 9 30 30 H 1.09004 * 109.19883 * 76.68120 * 17 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 1.5340 -4.8694 -0.2332 12 6 2.1262 -5.8262 0.7925 13 6 3.2688 -6.6081 0.3041 14 6 4.3350 -5.5805 -0.1416 15 8 5.3883 -5.4930 0.4426 16 6 4.0358 -4.7011 -1.2958 17 6 3.2916 -3.3888 -0.9907 18 1 -0.4849 0.8401 0.0004 19 1 0.6246 -2.5571 -0.8897 20 1 0.6240 -2.5567 0.8903 21 1 1.7352 -5.2248 -1.2437 22 1 0.4611 -4.7601 -0.0746 23 1 1.3459 -6.5168 1.1122 24 1 2.4485 -5.2463 1.6574 25 1 2.9664 -7.2253 -0.5419 26 1 3.6636 -7.2345 1.1042 27 1 4.9787 -4.4453 -1.7792 28 1 3.4376 -5.2696 -2.0078 29 1 2.8603 -2.9969 -1.9118 30 1 3.9981 -2.6626 -0.5885 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261322034.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:30 Heat of formation + Delta-G solvation = -54.541891 kcal Electronic energy + Delta-G solvation = -12831.205060 eV Core-core repulsion = 10625.657455 eV Total energy + Delta-G solvation = -2205.547604 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.01285 -38.68925 -35.38466 -34.02634 -32.45909 -29.33487 -26.38546 -25.74035 -23.60304 -21.22894 -20.04735 -18.42773 -17.38959 -16.93497 -16.45357 -16.12163 -15.79629 -14.98293 -14.83983 -14.34613 -14.12551 -13.73376 -13.58925 -13.01397 -12.74327 -12.55782 -12.37460 -12.10827 -11.92507 -11.70005 -11.55813 -11.07719 -10.64614 -10.37687 -8.94247 -8.23236 -6.32603 1.03098 1.39467 1.41982 1.49825 2.38793 3.10384 3.13572 3.32546 3.99734 4.07378 4.11870 4.16544 4.26903 4.62191 4.64420 4.76855 4.92822 4.94298 5.04556 5.10184 5.20151 5.27821 5.38837 5.48434 5.66706 6.02053 6.25651 6.59039 6.76314 6.84560 7.37741 8.88164 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.051915 B = 0.009646 C = 0.008663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.210100 B = 2902.044331 C = 3231.383757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.006 3.994 3 Si 0.963 3.037 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.273 1.273 7 C -0.537 4.537 8 H 0.064 0.936 9 C 0.206 3.794 10 N -0.554 5.554 11 C 0.043 3.957 12 C -0.110 4.110 13 C -0.143 4.143 14 C 0.375 3.625 15 O -0.507 6.507 16 C -0.177 4.177 17 C 0.088 3.912 18 H 0.265 0.735 19 H -0.028 1.028 20 H 0.005 0.995 21 H 0.072 0.928 22 H 0.060 0.940 23 H 0.090 0.910 24 H 0.047 0.953 25 H 0.126 0.874 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.114 0.886 29 H 0.044 0.956 30 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.876 -11.552 -3.484 12.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.193 4.193 3 Si 0.788 3.212 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.198 1.198 7 C -0.575 4.575 8 H 0.082 0.918 9 C 0.080 3.920 10 N -0.280 5.280 11 C -0.086 4.086 12 C -0.148 4.148 13 C -0.180 4.180 14 C 0.253 3.747 15 O -0.384 6.384 16 C -0.215 4.215 17 C -0.040 4.040 18 H 0.074 0.926 19 H -0.010 1.010 20 H 0.023 0.977 21 H 0.090 0.910 22 H 0.079 0.921 23 H 0.109 0.891 24 H 0.066 0.934 25 H 0.144 0.856 26 H 0.113 0.887 27 H 0.112 0.888 28 H 0.132 0.868 29 H 0.062 0.938 30 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.481 -11.416 -2.722 12.562 hybrid contribution -0.328 1.338 -0.633 1.516 sum 4.153 -10.078 -3.354 11.405 Atomic orbital electron populations 1.70063 1.07570 1.27954 1.51424 1.25863 0.95714 1.03020 0.94704 0.85527 0.78279 0.78364 0.79024 1.19118 1.20666 1.19786 1.21614 0.93712 0.91561 1.50600 0.91832 1.19471 0.90316 0.88515 0.93727 1.62366 1.13413 1.03213 1.48963 1.21854 0.97635 0.90028 0.99036 1.20314 0.97683 0.97873 0.98977 1.21758 0.94820 0.97108 1.04353 1.25382 0.85442 0.82668 0.81169 1.90348 1.28017 1.67426 1.52613 1.21929 1.03475 0.97204 0.98916 1.22199 0.93277 0.94384 0.94137 0.92640 1.00998 0.97739 0.91033 0.92100 0.89113 0.93440 0.85604 0.88702 0.88781 0.86788 0.93792 0.92868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.52 13.29 21.45 0.28 -55.23 16 2 C 0.01 0.32 5.46 84.66 0.46 0.78 16 3 Si 0.96 44.34 29.54 68.60 2.03 46.37 16 4 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 5 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 6 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 7 C -0.54 -30.22 8.50 25.60 0.22 -30.00 16 8 H 0.06 3.52 5.98 -2.91 -0.02 3.50 16 9 C 0.21 10.76 4.65 85.55 0.40 11.16 16 10 N -0.55 -23.12 4.05 -902.52 -3.66 -26.77 16 11 C 0.04 1.36 5.48 86.57 0.47 1.83 16 12 C -0.11 -2.91 5.13 28.43 0.15 -2.76 16 13 C -0.14 -3.12 6.09 29.24 0.18 -2.94 16 14 C 0.37 11.17 6.22 29.63 0.18 11.36 16 15 O -0.51 -19.05 17.88 -1.46 -0.03 -19.08 16 16 C -0.18 -4.95 4.88 29.38 0.14 -4.80 16 17 C 0.09 3.31 4.89 86.25 0.42 3.73 16 18 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 19 H -0.03 -1.53 8.07 -2.39 -0.02 -1.55 16 20 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 21 H 0.07 1.87 5.92 -2.39 -0.01 1.86 16 22 H 0.06 2.02 7.62 -2.39 -0.02 2.00 16 23 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 24 H 0.05 1.57 7.79 -2.39 -0.02 1.55 16 25 H 0.13 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 27 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 28 H 0.11 2.38 6.87 -2.39 -0.02 2.37 16 29 H 0.04 1.70 7.98 -2.39 -0.02 1.68 16 30 H 0.05 2.26 6.64 -2.38 -0.02 2.24 16 Total: -1.00 -67.25 243.26 2.37 -64.88 By element: Atomic # 1 Polarization: 0.36 SS G_CDS: 1.11 Total: 1.48 kcal Atomic # 6 Polarization: -14.27 SS G_CDS: 2.63 Total: -11.65 kcal Atomic # 7 Polarization: -78.63 SS G_CDS: -3.37 Total: -82.00 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: -0.03 Total: -19.08 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -67.25 2.37 -64.88 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261322034.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.341 kcal (2) G-P(sol) polarization free energy of solvation -67.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds