Wall clock time and date at job start Mon Mar 30 2020 01:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 N 1.46506 * 109.47289 * 120.00172 * 2 1 3 5 5 N 1.40435 * 126.73072 * 299.68710 * 4 2 1 6 6 C 1.32738 * 106.72614 * 179.83192 * 5 4 2 7 7 C 1.41288 * 125.65864 * 180.17411 * 6 5 4 8 8 H 1.08004 * 119.99957 * 0.32419 * 7 6 5 9 9 C 1.39863 * 120.00192 * 180.33079 * 7 6 5 10 10 N 1.30868 * 119.99484 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00025 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47231 * 89.99848 * 11 9 7 13 13 H 1.48500 * 109.46937 * 209.99851 * 11 9 7 14 14 H 1.48500 * 109.47296 * 329.99950 * 11 9 7 15 15 N 1.34766 * 108.68374 * 0.43192 * 6 5 4 16 16 C 1.30984 * 109.76027 * 359.71943 * 15 6 5 17 17 O 1.35331 * 125.85592 * 180.02562 * 16 15 6 18 18 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 19 19 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 20 20 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 22 22 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 23 23 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 24 24 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 25 25 H 0.97009 * 119.99443 * 180.02562 * 10 9 7 26 26 H 0.96696 * 114.00161 * 269.99715 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6907 1.1962 5 7 1.7728 -0.3327 2.5318 6 6 2.3976 -1.2270 3.2880 7 6 2.4104 -1.2460 4.7007 8 1 1.8753 -0.4897 5.2558 9 6 3.1163 -2.2440 5.3803 10 7 3.7644 -3.1606 4.7076 11 14 3.1338 -2.2687 7.2480 12 1 1.9953 -3.0836 7.7430 13 1 4.4100 -2.8609 7.7232 14 1 3.0100 -0.8812 7.7626 15 7 3.0223 -2.1106 2.4847 16 6 2.8035 -1.8010 1.2310 17 8 3.2767 -2.4712 0.1547 18 1 -0.3633 0.5139 -0.8900 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 -1.0277 -0.0005 21 1 1.8934 -0.5138 -0.8899 22 1 1.6767 1.9563 -0.8900 23 1 1.6768 1.9562 0.8900 24 1 3.1300 1.4424 0.0005 25 1 4.2536 -3.8530 5.1790 26 1 4.1357 -2.1562 -0.1582 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261323292.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:34 Heat of formation + Delta-G solvation = 40.800053 kcal Electronic energy + Delta-G solvation = -12484.693201 eV Core-core repulsion = 10179.739591 eV Total energy + Delta-G solvation = -2304.953611 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.090 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.03355 -36.49924 -35.23371 -33.10346 -29.50399 -28.86309 -26.89097 -25.85795 -21.80913 -20.53017 -19.42065 -17.60693 -16.89646 -15.34824 -14.88320 -14.31776 -13.95158 -13.39680 -12.99453 -12.26208 -12.10566 -11.95237 -11.83933 -11.22457 -11.16089 -10.92297 -10.78216 -10.49029 -10.11851 -9.54541 -9.25269 -8.06711 -8.03906 -7.83443 -6.38695 -4.40894 2.89682 3.18219 3.21021 3.26094 3.51654 4.11443 4.39696 4.81001 5.11732 5.40782 5.47848 5.67061 5.83593 5.92669 6.06348 6.13607 6.45155 6.54965 6.76021 7.11420 7.40423 7.50511 8.22174 8.34179 8.69876 8.91641 9.06577 10.08844 10.55352 Molecular weight = 197.09amu Principal moments of inertia in cm(-1) A = 0.055223 B = 0.010469 C = 0.009354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.914256 B = 2673.926243 C = 2992.593055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.164 3.836 3 C -0.153 4.153 4 N -0.419 5.419 5 N -0.420 5.420 6 C 0.360 3.640 7 C -0.441 4.441 8 H 0.088 0.912 9 C 0.080 3.920 10 N -0.758 5.758 11 Si 0.915 3.085 12 H -0.271 1.271 13 H -0.279 1.279 14 H -0.263 1.263 15 N -0.491 5.491 16 C 0.394 3.606 17 O -0.461 6.461 18 H 0.059 0.941 19 H 0.068 0.932 20 H 0.054 0.946 21 H 0.083 0.917 22 H 0.060 0.940 23 H 0.069 0.931 24 H 0.052 0.948 25 H 0.272 0.728 26 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.770 3.955 -6.871 7.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.059 3.941 3 C -0.211 4.211 4 N -0.225 5.225 5 N -0.259 5.259 6 C 0.102 3.898 7 C -0.483 4.483 8 H 0.106 0.894 9 C -0.143 4.143 10 N -0.384 5.384 11 Si 0.740 3.260 12 H -0.196 1.196 13 H -0.204 1.204 14 H -0.187 1.187 15 N -0.228 5.228 16 C 0.080 3.920 17 O -0.259 6.259 18 H 0.078 0.922 19 H 0.087 0.913 20 H 0.073 0.927 21 H 0.101 0.899 22 H 0.079 0.921 23 H 0.088 0.912 24 H 0.071 0.929 25 H 0.083 0.917 26 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -1.322 3.683 -6.644 7.711 hybrid contribution 0.590 0.014 0.258 0.645 sum -0.731 3.698 -6.386 7.415 Atomic orbital electron populations 1.22048 0.94709 1.02211 1.02155 1.20796 0.94802 0.93095 0.85395 1.22059 1.01049 0.95715 1.02304 1.50929 1.43305 1.21979 1.06325 1.78760 1.36558 1.27086 0.83452 1.20654 0.88827 0.85776 0.94516 1.18297 1.30956 1.12422 0.86590 0.89430 1.25853 0.93582 0.94306 1.00542 1.70060 1.21829 1.09808 1.36742 0.86219 0.78097 0.79373 0.82320 1.19616 1.20409 1.18690 1.71467 1.26753 1.28416 0.96200 1.22223 0.95191 0.86822 0.87753 1.84699 1.40093 1.57734 1.43372 0.92196 0.91295 0.92717 0.89889 0.92123 0.91229 0.92910 0.91741 0.75526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 9.47 37.16 0.35 -2.08 15 2 C 0.16 2.85 3.74 -67.93 -0.25 2.60 15 3 C -0.15 -2.32 9.47 37.15 0.35 -1.97 15 4 N -0.42 -9.75 3.33 -56.10 -0.19 -9.93 15 5 N -0.42 -11.45 12.68 30.82 0.39 -11.06 15 6 C 0.36 10.67 7.60 -157.88 -1.20 9.47 15 7 C -0.44 -12.76 9.49 -37.82 -0.36 -13.12 15 8 H 0.09 2.43 7.84 -52.48 -0.41 2.01 15 9 C 0.08 2.17 5.49 -17.35 -0.10 2.07 15 10 N -0.76 -21.48 11.89 55.54 0.66 -20.81 15 11 Si 0.92 19.79 29.56 -169.99 -5.02 14.76 15 12 H -0.27 -5.76 7.11 56.52 0.40 -5.36 15 13 H -0.28 -5.85 7.11 56.52 0.40 -5.45 15 14 H -0.26 -5.56 7.11 56.52 0.40 -5.16 15 15 N -0.49 -14.25 9.37 -13.94 -0.13 -14.38 15 16 C 0.39 9.74 9.13 -89.06 -0.81 8.92 15 17 O -0.46 -9.15 13.33 -17.69 -0.24 -9.38 15 18 H 0.06 0.73 8.14 -51.93 -0.42 0.31 15 19 H 0.07 1.21 8.14 -51.93 -0.42 0.79 15 20 H 0.05 0.92 8.14 -51.93 -0.42 0.50 15 21 H 0.08 1.26 7.83 -51.93 -0.41 0.85 15 22 H 0.06 0.71 8.14 -51.93 -0.42 0.28 15 23 H 0.07 1.19 8.14 -51.93 -0.42 0.77 15 24 H 0.05 0.81 8.14 -51.93 -0.42 0.38 15 25 H 0.27 6.99 8.30 -40.82 -0.34 6.65 15 26 H 0.39 5.50 9.06 45.56 0.41 5.91 15 LS Contribution 237.75 15.07 3.58 3.58 Total: -1.00 -33.82 237.75 -5.04 -38.85 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -2.08 Total: 2.49 kcal Atomic # 6 Polarization: 7.90 SS G_CDS: -2.02 Total: 5.88 kcal Atomic # 7 Polarization: -56.93 SS G_CDS: 0.73 Total: -56.19 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: -0.24 Total: -9.38 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.76 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -33.82 -5.04 -38.85 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261323292.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.654 kcal (2) G-P(sol) polarization free energy of solvation -33.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds